LOC118938791


Basic Information

Item Value
gene id LOC118938791
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 16612010 ~ 16617742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036054.1
CCAGAGGTCGCTGGAGGCTGTCAGGTGTGACCAGGGGAGAGGTGCAAGTCAATTGGACAGATCTGTCACTACCAAGGCCCTCGGGATGCGGGTGACATGACATGAGAGTCTCCGTGATCACTCTAGTAGAGCCTGACAACCGGTTCCAAGGAGACTGCAAGGTCTACAAAGGGGATGTAGTGTTTCCCCAGATCAAGTATGAAGACATTGCGCATCTCTAGTCAAAACAGGCCTTGCAGATTTTCTGGCTGGCGCCCGCATGGTTGGTTTCCTTTCAAATTGGACTTTGACATTTGTacgttcctatcaaatggcagggactgggagactagtcaggattgaagcaaagatgaacggaacatATTACAGAGAAATCCTTAAtgaaacctgctctagagcgcccaggacctcagactgggttgaaggttcaccttccatcaagACAACAACCGtaagcgcacagccaagacaacgcaagac
>TU1443167
TGTGACCAGGGGAGAGGTGCAAGTCAATTGGACAGATCTGTCACTACCAAGGCCCTCGGGATGCGGGTGACATGACATGAGAGTCTCCGTGATCACTCTAGTAGAGCCTGACAACCGGTTCCAAGGAGACTGCAAGGTCTACAAAGGGGATTGTTTCCCCAGATCAAGTATGAAGACATTGCGCATCTCTAGTCAAAACAGGCCTTGCAGATTTTCTGGCTGGCGCCCGCATGGTTGGTTTCCTTTCAAATTGGACTTTGACATTTGTacgttcctatcaaatggcagggactgggagactagtcaggattgaagcaaagatgaacggaacatATTACAGAGAAATCCTTAAtgaaacctgctctagagcgcccaggacctcagactgggttgaaggttcaccttccatcaagACAACAACCGtaagcgcacagccaagacaacgcaagactGACtttgggataagtctctgaatgtccttgagtggcccaactagagcccagacttgaaccctatcgaacatctctagagagacatgaaaatagctgtgcagcaacgctccccatccaacctgacagagcttgagaggatctgccgagaagaatgggagaaagtccccaaatacagttgtgccaagcttgtagcgtcatacccaagaagactcaaggctgtaatcgctgccaaaggcgcttcaacaaagtgcagagtaaagggtctgaattcttatgtaaatgcgATTCTAATGTTcagttttaatatatatatatataaactagtAAAAATGtgaaactgtttttgctttgtcattatggggtattgtgtgtagattgatgagaaaaaaaaaatctattttagaatagggctgtaacctACCAAAACGCAGAAactgtcaaggggtctgaatactttcagaatttttcaagtctcatagcaaagggtct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036054.1 False 480 mRNA 0.50 3 16612500 16617742
TU1443167 True 941 lncRNA 0.45 3 16612010 16617717

Neighbor

gene id symbol gene type direction distance location
hus1 hus1 coding downstream 152431 16448445 ~ 16460069 (-)
LOC110489705 LOC106590420 coding downstream 172583 16328945 ~ 16439917 (-)
LOC110489704 LOC106590419 coding downstream 287906 16318899 ~ 16324594 (-)
shrprbck1r LOC106590417 coding downstream 393033 16206792 ~ 16219467 (-)
LOC110489701 LOC106590404 coding downstream 435359 16161354 ~ 16177141 (-)
LOC110489710 LOC106590425 coding upstream 50145 16667887 ~ 16680822 (-)
dph2 dph2 coding upstream 68899 16686641 ~ 16690526 (-)
LOC110490827 LOC106590390 coding upstream 77806 16695548 ~ 16703091 (-)
LOC110489714 LOC106590427 coding upstream 102325 16720067 ~ 17062892 (-)
actr3b LOC106590428 coding upstream 589540 17207282 ~ 17226440 (-)
G1262954 NA non-coding downstream 33754 16578483 ~ 16578746 (-)
G1262941 NA non-coding downstream 53789 16558481 ~ 16558711 (-)
G1262924 NA non-coding downstream 71500 16540687 ~ 16541000 (-)
G1262899 NA non-coding downstream 86345 16525856 ~ 16526155 (-)
G1262879 NA non-coding downstream 102485 16509760 ~ 16510015 (-)
G1263432 NA non-coding upstream 11560 16629302 ~ 16631754 (-)
G1263436 NA non-coding upstream 17769 16635511 ~ 16635840 (-)
G1263456 NA non-coding upstream 43283 16661025 ~ 16661240 (-)
G1263458 NA non-coding upstream 48051 16665793 ~ 16666028 (-)
G1262745 NA other downstream 335948 16276009 ~ 16276552 (-)
LOC110490929 LOC106590401 other downstream 577378 15938237 ~ 16035283 (-)
LOC110489690 LOC106590399 other downstream 767359 15821701 ~ 15845199 (-)
G1262503 NA other downstream 804883 15806250 ~ 15807617 (-)
G1261796 NA other downstream 1106302 15505698 ~ 15506198 (-)
G1263444 NA other upstream 27902 16645644 ~ 16646417 (-)
G1264199 LOC106590429 other upstream 844086 17461828 ~ 17462977 (-)
G1265249 NA other upstream 1566049 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 1958797 18576539 ~ 18580163 (-)
G1266471 NA other upstream 2490817 19108559 ~ 19109357 (-)

Expression


Co-expression Network