LOC110489721 (LOC106590355)


Basic Information

Item Value
gene id LOC110489721
gene name LOC106590355
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 17742649 ~ 17746298 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110489721
TAGTGTTTGCACCACAATGGCAGCAGCCATGGACTCAATCAGTTGTTCAATATGTCTGGATCTACTGAAGGATCCAGTGACTATTCCCTGTGGACACAGCTACTGTATGGGCTGTATTAAGGACTGCTGGGATCAGGATTATGTGATGGGTTTTCTGATCAGCTGCCCCCAGTGCAGACAGACCTTCATCCCAAGGCCTGTTCTGAAGAAAAGCACCATGCTAGCAGAATTGGTGGAGACTCTGAAGAAGACAGGACTCCAAGCTGGTACCCCTGCTCACCATTATGCTGGACCTGGAGATGTTGCGTGTGATGTCTGCACTGGGAGAAAACTCAAAGCGGTCAAgtcctgtctggtgtgtctggcctcttactgtgagactcacctcCAGCCTCACTATGCATCTCCTACCTTTAAGAAGCACAAGCTGGTCAAAGCCTCCACACAACTAGAGGAGAAGATCTGCTCTCATCATGACAAACTGGTGGAGATTTACTGCCATACTGATCAACAGTTTATCTGTTATCTGTGTACAATGGATAAACATAAAGGCCATGATACAGTCTCAGCTGAATCAGAAAGGACTGAGAGACAGAGCCAGGTGGGgggaaaacaacagaaatccaaaCAGAGAATCCAGGATAAAGAGAATGAGATGCAAGAGTTGAGACAGGCTGTGTATTCACTCAAGTGCTCTGCAGAGGCAGCGGTGAAGAACAGTGAGAGGATCTTTACTGAACTGATCCAGTCCATTGAGAGAAGGCGCTCTGAGGTGAAAGAGCTGATCAGAGCCCAGGAGAAGGCTGAGGTGAGTCGAGCTGAAGGACTGCTGAAGCAACTGGACCAGGAGATGGCTgagctgaggaggagagagggcgaGTTGGAGAAGCTTTCAAACACAGAAGACAACATTCAATTCCCCCAGAGTTTCCagtctctctatgtccctctTGGATCTAAGGCCTTACCCAGCATCACTTTCAATCAACACGTCTCCTTTGAGCATATAAGGAAATCACTCTCTGGGCTGAAAAGTCAAGTTGAAAAGATCTGCTCTGGGGAAATTGCGAAGATCTCTGTAAAAAGTAGGTAACATACAGTATTAGGTCAGCCTGAACCCAAAACCAGAGAGGAGTTCTTGGAATATTCCTGTCAGCTCACATTGGATCCCAACACAGCACATAAAGAGCTGCGTCTGTCTGAGgggaacagaaaggtgacatggAGTGATAACGACCAGCTTTATCctgaccatccagacagattTACCACCTACCCCCAGGTgttgtgtagagagggtctgtctgGAGCCTGCtactgggaggtagagtggaCCGGGGTGGAGGTTTGTATAGCTGTCTCATATAAAGGGATCAGCAGGAGAGGACATAATGAGTGGTTAAGAAGCAGTAATCAGGCCTGGTGTTTGGAGTGTGGTGCCTCTAGCTGCTACTTCTATCACAATGATAAACAGACTGACATACCAGTCCCCCGCTCCACCAGAGTAGTAGGAATGTACTTGGATCACAAGGCAGGaactctgtccttctacagtgtCTTGGACACAATGACCCTCCTCCACAGAGTCCAGACCAATTTCACTCAACCCCTTTATCCTGGATTCTATGTCACTACCTCTCTCAAGATACTGACACCGACTCAGTGATGAGTTACAGTGAGTTATAGTGAAACATTTAGAATAAAGACAAGCAAAAGGGTCAGAACAGTGACCGGAAAGATCCATATTATAAGATTAAGAAGTATTACCAAGTTTAAATAAATGTGCACATAAATTATCGTGATTCTATTGCCTTAGTGCATTTTTCTAAAATGTGTTTTGTATAAAACTCCCACTTCCACAGTCAACATGAGCCCTCtaccagagaggaacagagacaggtaCGGTATGTAATATAAATACCTTGTCTTTATACCGTGGCGTGTATTCACGGACGGCAAGGGTAGCCAGGCTTCCCCAtatacttttaaaaaaatgtctCATTCATCTCTCTCAGTGTGTTAATCATTTTCCATCAATTCGCAAGGGGCTGAATCTCACCGAATAAATAATTTGAGCGAgggaaacagtgcccctctgtctcagtatgtgtagcccaaaATAGTATAACatgtctgggtgggcatctgtccgcggtggcggctctggtgctggacgtggcccccacttcaccttAGTCTTCCCCCACCTTGTcctcttccgtggcctcctcacCTTGGCAactcttctcaatggacagaggggcggcagctcgggacag

Function

NR:

description
E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110489721 True 2279 mRNA 0.47 6 17742649 17746298

Neighbor

gene id symbol gene type direction distance location
bcl2a LOC106590353 coding downstream 13859 17661711 ~ 17728790 (-)
LOC110489717 LOC106590430 coding downstream 214639 17476964 ~ 17528010 (-)
actr3b LOC106590428 coding downstream 516209 17207282 ~ 17226440 (-)
LOC110489714 LOC106590427 coding downstream 679757 16720067 ~ 17062892 (-)
LOC110490827 LOC106590390 coding downstream 1039558 16695548 ~ 16703091 (-)
LOC110489722 LOC106590357 coding upstream 4950 17751248 ~ 17756522 (-)
LOC118938947 NA coding upstream 350426 18096724 ~ 18097899 (-)
cavin4b LOC106590360 coding upstream 423424 18169722 ~ 18178814 (-)
LOC110489726 LOC106590361 coding upstream 449777 18196075 ~ 18208500 (-)
LOC110489728 NA coding upstream 529178 18275476 ~ 18291919 (-)
G1264340 NA non-coding downstream 93293 17649154 ~ 17649356 (-)
G1264335 NA non-coding downstream 100190 17642170 ~ 17642459 (-)
G1264310 NA non-coding downstream 144615 17597735 ~ 17598034 (-)
G1264298 NA non-coding downstream 157710 17584604 ~ 17584939 (-)
G1264287 NA non-coding downstream 170515 17570209 ~ 17572134 (-)
G1264408 NA non-coding upstream 22738 17769036 ~ 17769354 (-)
G1264509 LOC106590351 non-coding upstream 96432 17842730 ~ 17842986 (-)
G1264566 NA non-coding upstream 140750 17887048 ~ 17887255 (-)
G1264581 NA non-coding upstream 151510 17897808 ~ 17898040 (-)
G1264598 NA non-coding upstream 162212 17908510 ~ 17908714 (-)
G1264199 LOC106590429 other downstream 279672 17461828 ~ 17462977 (-)
G1263444 NA other downstream 1096232 16645644 ~ 16646417 (-)
G1262745 NA other downstream 1466097 16276009 ~ 16276552 (-)
LOC110490929 LOC106590401 other downstream 1707527 15938237 ~ 16035283 (-)
LOC110489690 LOC106590399 other downstream 1897508 15821701 ~ 15845199 (-)
G1265249 NA other upstream 437493 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 830241 18576539 ~ 18580163 (-)
G1266471 NA other upstream 1362261 19108559 ~ 19109357 (-)
G1266708 LOC106590345 other upstream 1688720 19435018 ~ 19453770 (-)
G1267414 NA other upstream 2521668 20267966 ~ 20268488 (-)

Expression


Co-expression Network