LOC110489724 (LOC106590359)


Basic Information

Item Value
gene id LOC110489724
gene name LOC106590359
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 17989845 ~ 18092131 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562515.2
GAACAACCGGGTTTTCACTGGTTACCACGGCCACAAAGTGATAATTGGCTATattatttaaaataaatgttGGTCTTAATTTGAGGTTAGGCATAAAGTTAGCAGTGTGTTTAAAGTTAGGGCTGAGGTTAGGTTAAGATttgaaaatcagattttaagaagataaattgtagaaatgggcGGGATTTATgattttgtggctgtggtaactagtgacgaccgaaCAACAGTGTAGAGGGGGAAGACGATTCGAATGCTGCTTACTTTGGTAAGAAGCGAACAGTTCTTCTGCAGGAGCTGAGAGTGCTGTGACTGTCGGCGTACCAGGGTTCAAAGTTGCTTCTGATCCGCAGCTTTGGGATTTTGCCAACTCGGATTGAGGTTGCTCTGTGAAAGCGGGCGAGATACAATGTATCCAAGCCTGCTCTCTCATTGCTCCCTGGTCCTCTGACGAGCTAAAACCCCACTGTCTATGGAGGGACAAACGAAGAGCGCAACGCTCAGGTACCAAGTACCCCCATTTCGGTTATCTGGGAGATGGTAACAAATGAACGGCACTGGAGGGAACATGGTTGAGAGGACCAGCAAATTTTTGTTGATCGTCGTCGGATCCGTCTTCTTCATGATGATTTTATATCAGTACGTGGCTCCTGGGGTGATGAACTTCGGGTCTCCACAGGGGTACCTCGCCGAGGACAATATGGATATTTTCCCCACTCCGGATCCCCATTATATAAAAAAGTACTACTTCCCTGTCAGAGACTTGGAACGCACCGTTGATTTCGAGATCAAGGGTGAAGACGTGATAGTGTttcttcacatacagaaaactgGCGGAACCACTTTTGGCAGGCATCTAGTGCAAAATGTTAGACTAGAAGTCCCATGTGATTGCAGACCAGGGCAGAAAAAGTGTACATGCTACCGTCCCAACAGAAAGGAGACCTGGCTGTTTTCGAGGTTCTCCACTGGCTGGAGTTGCGGGTTACATGCAGATTGGACCGAGCTCACAAACTGCGTTCCTGGAGTGCTCAACAAGAAGGAAAACAAATCGAAAAAACTGAGGAAGTTCTACTACATCACCCTGCTGAGGGACCCTGTGTCACGGTACCTGAGCGAGTGGCGCCATGTGCAGCGCGGTGCCACCTGGAAGACGTCCCTCCACATGTGCGACGGGCGCACGCCCACGCCCGAGGAGCTGCCGCCCTGCTATGAGGGTACAGACTGGTCCGGCTGCACCCTGCAGCAGTTCATGGACTGCCCCTACAACCTGGCCAACAACCGACAGGTGCGCATGCTCGCCGACCTCAGCCTGGTGGGCTGCTACAACCTCTCCACCGTGCCCGATAAGCGGCGCTCGCAACTTCTCCTCGAGTCAGCCAAGAAGAACCTGCGCGACATGGCCTTCTTCGGTCTGACTGAGTATCAGCGCAAGACGCAGTTCCTGTTTGAGCGCACCTTCCGACTGCGATTCATCCGCCCCTTTGTGCAGTACAACAGCACGCGGGCGGCTGGCGTGGACCTGGACAATGACACGGTGGCGCGCATCGAGGAGCTCAACGACCTGGACATGCAGCTGTATGACTACGCTCGCGACCTCTTCCAGCAGCGCTATCAGTACACTCGGCAGCTGGAGAGACGCGCGCACCGCTTGGCACTTCGGGGTCGCGGTCTCGACCCCCGGGATTTTCTCAGAGATGAGGGCGGTATGGGGGGCGAAGGGACAGCCAGGCTGCCCACAGAGGACTACATGAACCACATCATCAACAGGTGGTAGCCCCCACCCACCTAGACACCCACTTTCCTGACCTCCCCATTGTCTTTCATGGTGAGGTTGCATCAGAGTGATTGTTTAGGAACATTGAAATTTGGCACTTGTGGTCTGGGAAGGAGACTGTTGCAGAGGATTGGGTGACTTACCTATGGACTTTGTATGAGCCAAGCTGTGGGTTGCGGACCAGATGATATCCCTTCTAGCTCCTGGATGACATAAACGTTTTGGTTTTCTTAGACTATGAGGAGAGGTCAGATATTTGTGATTTGAAGCCCATGATAAACCTGAGTCACCCTCTGGAGTTCTAGAAGCAGCAACTGTCTCTACACTCCTCAGATTTTCCTTTACAAAGTAAACAAACTTGTTTTACTTGCCGTTCTATGTCTTAGCCCACAAGAATAACCTATGTGCTTAATAAGTTGTTTGAGGAGTTTCAAAGCAGTGAGATGAGAAATGACCTGTACTTTGGGCCAAAAGCATTTCAATAGTGTCTAAGCGAAGGACATTTCCGACAAGCTATCTTTTTATTTATTCAATTGCTTCTGATCATTTGAAATAGATATTTTTCCAATGTGAGAGACTATTTGGCCCACCTTGATATACAGTATGGCACTTGCAAGTGATATAAAGTCATGATTGTCATAACATACCCATCAATTTGCTGAAAGTTTACTAACATGTATCAAAGTTTAGAGATATATCTTAATATAAATGACGgataaacagattttttttttacacttgtatgtttttACCATTTTGTCTGAATGTCTATGAAGAGGCCAGTCTCTTTGGTTCCGATGTATTTTAATTCACCCGTTGGATTGTGATCTGTACACTAAAGGAGATGTACATGAATGAGAAGGTAAATGATTGACATGAAGGTTTGTTATGCGATTGTCTAGGAACATTTTCGACCACAGAATCTAGATACAACAATGGATGCTCACCAGGAGACGGACTGGGGGTCTCATACTGAAGGGAGACACTAAAAACAGGAAACACTGTCGTTCTTATTACTTGtacaaagttgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgctttTGTTTCTGTGCTGTCCCTTCTCTGTTTGGGATCAAGTGTGTCATTTAAAACCAGAATACAATGAACATGTGTAATGGATGGATTATTAGTCAAGGTTGCCATGCTCCCCAagatgtgttttatttttaataatgcATATTTAAATGTCTAAAAGTGCAACAGGTAAAATATTAAAGTTGAAGATTGGACAGCCTCTTTCCAACCACACTCTTTTTTTGTTAATaatcttttttttaaaacatttctaaataGAATGATCCCCTGGAGAACGGTGTGTTTAATTAAAATTCAAACACAATGGGTATGGACATGATATAACCATTATCATTAAATACTGTTGTATATGGAACCTCCATATTTATCCTATTTATAATTCTCCTCACAAAGTCTCCAATCCAACAGCAAATACTGTGACCCCACAGGCATGGCCAGTACTAAAAACATCTGAATGTTTTGGGAGTGTTAAGATGCTaagggattattattattattaaggaaATGTGGACCAGTGTGTGCAGATCCTGCAAATCACTCATAGTCTTGTCATCAATAGCAGAATGTTTGTTTGAGTGACTTCTACTTATGTCCCAGGGCTCATAAGCAaccatttcatggtaaagtctacaccagttgtattcagtgcatgtgacaaaataacatttgatttgatttgacagtctCCAGAGCAGAGGTCAAACAATGGGTTCCAGAAGATTTCGCTGATGCAAAGAATGTTTTATCTTATTtgggaaaggtgtgtgtgtgtggacatgtttaactatacttgtggggactagaagtccccacaagaatagtaaataAACAACATTTTGGCCAACTAgtgacattttgttagtccccacaagaaAAATTTATATTTCTAGGTAGTTAAGGTTCAAATTAGGGGTTAAAGGTTACTGTTACGAGTTACGGTTAAGATTAGGGtgaagtttagggttagggaaaataagaTTTTAAAAGGTAatcaattgtgtgtccccacaaggttagttaaacAAGATTGTGAGTGAGAATTGAGTGATGTAGGGCATTTGTAAACAGTctccagtctggtctggtctggttttacCCATATTGTATTATTGCTGTGAGTATTTCTGTTCTTCATGCAGATTGAATCTTCTATTcaacaataataaataaaaaaaagatattCCTTTGTA

Function

NR:

description
heparan-sulfate 6-O-sulfotransferase 1-B-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0017095 heparan sulfate 6-O-sulfotransferase activity molecular_function

KEGG:

id description
K02514 HS6ST1; heparan sulfate 6-O-sulfotransferase HS6ST1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562515.2 True 4029 mRNA 0.44 2 17989845 18092131

Neighbor

gene id symbol gene type direction distance location
LOC110489719 LOC106590432 coding upstream 348037 17537295 ~ 17641808 (+)
LOC110490933 LOC106590429 coding upstream 516883 17244157 ~ 17472962 (+)
LOC118938946 NA coding upstream 759285 17228750 ~ 17230560 (+)
ggh LOC106590426 coding upstream 1270136 16716150 ~ 16719709 (+)
LOC100136240 LOC100136240 coding upstream 1303197 16680278 ~ 16686648 (+)
dnah5l LOC106590358 coding downstream 9556 18101687 ~ 18171361 (+)
LOC110489727 LOC106590362 coding downstream 135698 18227829 ~ 18275594 (+)
LOC110489731 LOC106590368 coding downstream 214083 18306214 ~ 18325293 (+)
scn5lab LOC106590371 coding downstream 298026 18390157 ~ 18580116 (+)
LOC110489736 LOC106590352 coding downstream 758500 18850631 ~ 18855321 (+)
G1264616 NA non-coding upstream 56719 17932890 ~ 17933126 (+)
G1264580 LOC106586415 non-coding upstream 91546 17897884 ~ 17898299 (+)
G1264561 NA non-coding upstream 105543 17884101 ~ 17884302 (+)
G1264551 NA non-coding upstream 114301 17875298 ~ 17875544 (+)
G1264545 NA non-coding upstream 118332 17871291 ~ 17871513 (+)
G1264862 NA non-coding downstream 18611 18110742 ~ 18111891 (+)
G1264873 NA non-coding downstream 45759 18137890 ~ 18138106 (+)
G1264857 NA non-coding downstream 72800 18164931 ~ 18165489 (+)
G1264958 NA non-coding downstream 98712 18190843 ~ 18191049 (+)
G1264961 NA non-coding downstream 100987 18193118 ~ 18193395 (+)
mcmdc2 mcmdc2 other upstream 2095681 15885437 ~ 15895996 (+)
G1261980 NA other upstream 2253428 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 2283306 15696896 ~ 15706601 (+)
LOC110489660 pan3 other upstream 2794900 15166247 ~ 15194945 (+)
G1260946 LOC106590444 other upstream 2967792 15020992 ~ 15022053 (+)
LOC110489737 LOC106590377 other downstream 767980 18859697 ~ 18866106 (+)
epb41l3a LOC106590342 other downstream 1581982 19598284 ~ 19680110 (+)
G1267949 pck2 other downstream 2748164 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 3694090 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 5040728 23132828 ~ 23146739 (+)

Expression


Co-expression Network