LOC118938947


Basic Information

Item Value
gene id LOC118938947
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18096724 ~ 18097899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118938947
ATGTGTGATGGCAGACGCACACACGCCTGCttgtctggtcagcatgtaaatCTAGATAGAAGCAAGATTCAAGAACTCAACCCTCGCTTGCTCCTCCCTCTAAGGAACCTTAGATGCTTGTCCATTATCGAAATGAAATCATTAAATTCATAAAAAACACTTTCAGTGACCTAGAGAACCTTGAAGACTTTTACATGCTATACAGTGTCATTAGATACATCACCAATCAACCTTTCAGCAAACTCAGCAGACTTGTGAAGCTGGACCTCGGCCTCATTATCAAATACATTGAGGAAGGATCCTTCCAAGACCTGGAAAATCTTGATTACCTGGACCTGGGAAGCATATCAAAAGATTAACTCCTGCCATCTTACAAGGTCTTGTGAAACTGAAACAGCCAGTGTTGTATAACAACTGCCTTTATTTTGATAAAGACAACACTCCGCCCTAGAGTATGTGGAGTTACGCTACCAAGGCCCTGGAGGAGATGGAGTTGAACATTTTGGACCGGGTTTCTTCACGGAGTAAGTGCGTGTAAGATGTTTATCCATAGGAAGCACCATTTTGAGCAATTTCCATCCAAATAACTTTGTCCCCCTTGTCAACTTAAGACGGTATTTTGGGGCCGGCATCACTTTCAGTAACACCAATCTAGTACTGTCCTTCATCCACTTAAATCACTGGAAATGCTGACCTTTTACAAAACAGACCTGGATCCTCTACCCGACATTTTACTGCCTCCAGGGAATTCCTTGAAGGTTTTACTAATTCAGTCCAACCATTTACACGTTTTGGAGAAATCTTTGTTTGATAACCTCCCTATGTTGCTATTCATTGATATCAGCGACAACCCACTGTACAGTACCCGCCCAAATGCCTGGTTCAAAAGCTTTAAATTATCCTACTGTGCACATAGCCCATATCTATGACCGCCACTGTGACAATATGGGGACAGCTCACTACATGCGGGAATTAGATGACAAAGCATGCTCTTATGACCAGTTCTTCCACAGCCTTTTCTTGGCCACCTTCCTTCTGGACTTGGTGACTGTGACCATGTGCCTAATCTGGCACAATCAGAAATGTGCCATCTATTACCTGCTCCTTCCGCGGCCTCGCCTTCGAAGGCATAAGGCAGCGGGGAAAGGTTGCTACAGCTCCAGAGATGAGCCGTGA

Function

NR:

description
toll-like receptor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118938947 True 1176 mRNA 0.44 1 18096724 18097899

Neighbor

gene id symbol gene type direction distance location
LOC110489722 LOC106590357 coding downstream 340202 17751248 ~ 17756522 (-)
LOC110489721 LOC106590355 coding downstream 350426 17742649 ~ 17746298 (-)
bcl2a LOC106590353 coding downstream 367934 17661711 ~ 17728790 (-)
LOC110489717 LOC106590430 coding downstream 568714 17476964 ~ 17528010 (-)
actr3b LOC106590428 coding downstream 870284 17207282 ~ 17226440 (-)
cavin4b LOC106590360 coding upstream 71823 18169722 ~ 18178814 (-)
LOC110489726 LOC106590361 coding upstream 98176 18196075 ~ 18208500 (-)
LOC110489728 NA coding upstream 177577 18275476 ~ 18291919 (-)
LOC110489729 LOC106590364 coding upstream 194128 18292027 ~ 18301287 (-)
unm_hu7910 LOC106590366 coding upstream 227411 18325310 ~ 18369234 (-)
G1264847 NA non-coding downstream 4024 18092289 ~ 18092700 (-)
G1264780 NA non-coding downstream 101588 17993783 ~ 17995136 (-)
G1264738 NA non-coding downstream 165814 17930670 ~ 17930910 (-)
G1264734 NA non-coding downstream 173136 17923335 ~ 17923588 (-)
G1264598 NA non-coding downstream 188010 17908510 ~ 17908714 (-)
G1264893 NA non-coding upstream 13437 18111336 ~ 18111884 (-)
G1264904 NA non-coding upstream 31251 18129150 ~ 18129369 (-)
G1264905 LOC106590358 non-coding upstream 32599 18130498 ~ 18130752 (-)
G1264908 LOC106590358 non-coding upstream 34979 18132878 ~ 18133093 (-)
G1264909 NA non-coding upstream 35434 18133333 ~ 18133534 (-)
G1264199 LOC106590429 other downstream 633747 17461828 ~ 17462977 (-)
G1263444 NA other downstream 1450307 16645644 ~ 16646417 (-)
G1262745 NA other downstream 1820172 16276009 ~ 16276552 (-)
LOC110490929 LOC106590401 other downstream 2061602 15938237 ~ 16035283 (-)
LOC110489690 LOC106590399 other downstream 2251583 15821701 ~ 15845199 (-)
G1265249 NA other upstream 85892 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 478640 18576539 ~ 18580163 (-)
G1266471 NA other upstream 1010660 19108559 ~ 19109357 (-)
G1266708 LOC106590345 other upstream 1337119 19435018 ~ 19453770 (-)
G1267414 NA other upstream 2170067 20267966 ~ 20268488 (-)

Expression


Co-expression Network