cavin4b (LOC106590360)


Basic Information

Item Value
gene id cavin4b
gene name LOC106590360
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18169722 ~ 18178814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562516.2
ctctgagccctgACTGGCGGCATCTGCCCTCTCATATCCCCCTGAGCTGCCCACACCCTAGAGAGGTGGAGCCTCCATGTCCTTTTGCATTTGACCTGGGTGAGGGACCAGTAGCACGGTGAGTCTCTTTGGCCGAGGTGTCTGCTGCCCTCCATGGCCCAATGATCCAGCAACCAAACCCTTCCTAACACCTGCTGGTCTGACAAGTATCAGGTCGAAGCTATCTAGAGGCCTGGTTACCCTTTCTGCGGTTTCTACTGACCACTAAGAAAAACAAAGATTTCTATCCTCAACCCTTTCCCTTTGGATCCGAGACGAGGCGGTTGACGACACCAACCATGGCTAATAAACTGGGTCTGGCTGTGGGGGACGACACGACGTCCATCATGGCACTATTGGAGCGTGTGGCGGGCATCATTGACAACGTGCAGACGTGTCAGACACGTATGGAGGAGAGGCAGCTAGAATTGGAGAACAGCGTCAAGACCATCCAGGAGGACGTGGTGAAGCTGACGGTAAACCACGCCGCCACCAGCAGCACAGTGGACAAGCTGCTGGAGAAGACGCGGAAGGTCAGCTGCCACATCAAGGACGTTCGGGTACGGGTGGAGAATCAGAACATCCGCGTCAAGAAGGTGGAAATAACCCAGGAGGAACTGTTGGCCAAGAACAAGTTCCGGGTTGTTATCTACCAGGGTGACAGTGAGGTGCCAGCTGTGGCAGCCGGAAAGGAACCCAAAGGACCCAGTCAACCCAAGGCACCCAAACCGTCGGCGGCCGAAGTGGAGCCAGACCACTTTGAGCTCCCCCCTGAGTCTGATGAGGAGTACATGGTGGTGGAGGAAGCCTCGTCCACGGCCGCCACGATTAAGAAATCAGGCCTGAGCCGCATCGAGAGCTTCAAATCTACCTTCTCCCGCGCGAACATGACCAAGACGAAAGAGAACATGAACAGCAAGGTTGGCCAGATGGGTGAGCGCATCGTATCAACTGAGCGCCGGGAGAAGATCCGCCAGTCCGGCGAGAGGCTCAAGCAGTCCGGCTCGCGGCTCAAGGAATCTATTGCCAGCCATGTGCCAGCCAAACTGAAGAAGGAGAGGACTGTGGCGGAGGGCCAGGAGGGGGCCGAGGGGGTCACTGAGGGTGCCGCACCCATCCCACCACCCAAGGGACGCAAATCTGCAAGCCCTGACCTCGCCTACACGGAGGTGACCAAGGAGgcggaggatggagaggatgagGTACCGATAAATGATATCAAGCAGCTCTCCTAAAACATCGGTCAAGGAAactgaaaaacaacaacatacatattatttttccttttttattttatttttaggaTTGGCCTGTGACCCATAGTCCCAGTAGTCCTGGTCCCAGAAACAGGCCAGTTAGGGTGTCAACACGATGAGTTTATATAATCCACACACTCCTGTAACATTTGGAAGTCATCTTTGTTTTGGGAATTCAaggatttatatatatattttttttcttcattttttcctGTTTACATTAGACAAGGACTTTCAAGTAAGTGTGCAAAACAAATAACCGGAAAAGAATTACAGCAAGTTTGTGGGATTGGACATTTTCTACAGACTATCAACATCTTCATAATCAACATACTTACAACATAACGGACATTCAATTGTCGTTAATTTGCATGTTGAAAGGCTGAATATGGGATGTTAAGGCTAAACTAGTGAAATGATGGAAGTTGAAATTGAGTTTTGGTATGAATGGTTTAATTAAGGTTAATGTTACATATGCAAAACAATAACTTGACAGAGAAATGTCTTGTGTGAAGGTATGTGAAGAGTGATGTGATGAGCTTTAGGACTGAATGATGTCAATTCATGCCCGCCGAACCAGAATTCAGTGAATAGATAACATTTCTTGTGCAGTTTTTGCAGAGAAAAACTAAAATCAGCTGTTGTCTGATGAGTAATgcatatataaacatatataacaAGTATATATAATTTCATAGAAACATTTGTTAATTTCTAAAttggtcctttgtagctcagttggtagagtatggCGCTTCTaacaccagggtagtgggttcgattcccggaaCCAGACATACGTACAGTGTATGCACGGATGACTAAGAtaaaagcttctgctaaatggcatatattattatatgaAACGGTGGGTGAGGAAACTACTGTGCATTATGTCAAATATCTATGGAtatgacattttttttaatttaaaaaaaattgctaTACAAATGGCCAGTAGGAACAGACATTGTAAGTACATCATTTAACTCCCTATGGACATAAGCAGATTCCTGAATATTTGCATCTTCTGCTCATTTAGTATTGTTAAATATATGAAGCCATTTCTAGATATTTTTTTCTGTTATAGTGTGAGTGATTTGGCATGACTATAGATATTATTTCATGAAGTTGAGAGGAATTCTCTTGAGTTTATGCCACTTTACATATATAGGATGGATTTTAAGCCTCTATGCTGTTAAGGAGAGGTAACACATTGTGCATGTCATTATCTTATTCAATTGTCCAATACTCTTGTTAACTGTAGATTTTGTTTCTATTCAATGAACACAGTTGAAAAAGGTCTAAACTCAGTGCAGTACTACACTAACTGTTGCTATGGTAATCATTTGCTACACGTCCAACATATGTTAAGATAGTAGACAAGATAGTAGTAGAAAGCTTTTGTTTTTTCCCATAAAATGTGTCGTAACAGCTTATGACAACTACACTCGTATTACAACACGCACAACCCAGTCAAGAGGTATAGAACTGTGAAAAAAAATTACTGGCGTCCTTGTTTGCTATGCTCTGATTTATTACATAATTATTAACATTTTATAAAAGGGTTATTACTATGATGCTACACGATGCTATTCAAATGCTTTTTGACAGGGTGAAGTGTTAGAGGGGTTGATTTTAGTGGATAAATTGGAATAGGGGAAACATGTCATAACAACTATCTTTTCTACAGCACTTCAACAAATAAAATACCAGGATATGATGAGTTATTCAAAAACAAGAATTTCTATATGACTTGTGCATTGTTTACATCTACTGTTATTCTTTgaaaatatgtttaataaaaattCCAAATATAGTAATTTGGCTG

Function

NR:

description
muscle-related coiled-coil protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562516.2 True 3129 mRNA 0.43 2 18169722 18178814

Neighbor

gene id symbol gene type direction distance location
LOC118938947 NA coding downstream 71823 18096724 ~ 18097899 (-)
LOC110489722 LOC106590357 coding downstream 413200 17751248 ~ 17756522 (-)
LOC110489721 LOC106590355 coding downstream 423424 17742649 ~ 17746298 (-)
bcl2a LOC106590353 coding downstream 440932 17661711 ~ 17728790 (-)
LOC110489717 LOC106590430 coding downstream 641712 17476964 ~ 17528010 (-)
LOC110489726 LOC106590361 coding upstream 17261 18196075 ~ 18208500 (-)
LOC110489728 NA coding upstream 96662 18275476 ~ 18291919 (-)
LOC110489729 LOC106590364 coding upstream 113213 18292027 ~ 18301287 (-)
unm_hu7910 LOC106590366 coding upstream 146496 18325310 ~ 18369234 (-)
LOC110489732 wdr48 coding upstream 194617 18373431 ~ 18384106 (-)
G1264941 NA non-coding downstream 2206 18167310 ~ 18167516 (-)
G1264940 LOC106590358 non-coding downstream 3317 18166081 ~ 18166405 (-)
G1264938 LOC106590358 non-coding downstream 8923 18160284 ~ 18160799 (-)
G1264937 LOC106590358 non-coding downstream 10414 18158953 ~ 18159308 (-)
G1264936 NA non-coding downstream 10921 18158151 ~ 18158801 (-)
G1265260 NA non-coding upstream 16687 18195501 ~ 18195730 (-)
G1265270 NA non-coding upstream 32695 18211509 ~ 18211741 (-)
G1265271 NA non-coding upstream 33706 18212520 ~ 18212841 (-)
G1265310 NA non-coding upstream 101916 18280730 ~ 18281251 (-)
G1265371 NA non-coding upstream 256169 18434983 ~ 18436635 (-)
G1264199 LOC106590429 other downstream 706745 17461828 ~ 17462977 (-)
G1263444 NA other downstream 1523305 16645644 ~ 16646417 (-)
G1262745 NA other downstream 1893170 16276009 ~ 16276552 (-)
LOC110490929 LOC106590401 other downstream 2134600 15938237 ~ 16035283 (-)
LOC110489690 LOC106590399 other downstream 2324581 15821701 ~ 15845199 (-)
G1265249 NA other upstream 4977 18183791 ~ 18184123 (-)
G1265456 LOC106590371 other upstream 397725 18576539 ~ 18580163 (-)
G1266471 NA other upstream 929745 19108559 ~ 19109357 (-)
G1266708 LOC106590345 other upstream 1256204 19435018 ~ 19453770 (-)
G1267414 NA other upstream 2089152 20267966 ~ 20268488 (-)

Expression


Co-expression Network