LOC110489729 (LOC106590364)


Basic Information

Item Value
gene id LOC110489729
gene name LOC106590364
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18292027 ~ 18301287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036943923.1
TAAGGTTGGTTTGCGGACCGCCATTATGTCATGGAAGAAGAGAAGGTGACGTCATTTCCTTATTCAGGAAAAAGAACGTCAGTCAGATAATTTGCGCTGTAGCCCTTGAAGTCTTGTTATTTTGTGACATTAACgtttaaatactgtagtaattTGACTTACGCTAACACATTGACATTAAAGTTTTTATTTCAGAAAGCTAACGAAAGAGACTATCGTCGTAGCCAACAGTTTTGTACGTAGCTCTGCTTTTTAAACCTGTCCTTGCGCAAACATTATTCACCATCAAGCCCAACATCTGACTGTCATGGATCAAATATCGATCACTGCAGAAGTACCAAAGAGTCCATGGGGTGCCACCACAACCAAGGTGGTGTGTCCCTGCTCCTTCACTGATGTCATGAGCGAGCAGCTGGCCAAACAACTGGATGATGAAAGTCATTCTTTCCCTGATTTCTCAAAtgtCAGCGCTGCTCTGGATGCCGGTgaggagcgagagacagacagtgatctGATGCTGGCTCAGATGCTGCAGATGCAGTTTGACAAGGAGTTTGACACCCAGCTACGCACAGAAGAAAGGAAGTTCAATGGCGATAGCAAACTATCCATCTCCTTTGAGAACTATCGCATGGTGCACCCTTACGAGGCCAGCGGCAGCTCCGAGGATGAAGTTGATTGGCAAGATAGTTGTGACGACCCCTACAAAGCTGACAAACCCACGATAACTCCAAGGAGAGGCTTTACTGGGAAAGGCAAGAACATCACTACTAAGCACGATGAGGTTGTGTGTGGCAGGAAGAATACTGCACGCATGGACAATTTTGCCCCAGAGATCAATGTGGGAGATGGGCTTGGCATGGACCTGAAGCTTTCCAATCAGGTCTACAACTCCCTCAAGCAACACTGCTACTCCGAGCAGCGTCGCAGTGCACGGCTGCATGAGAAGAAGGAGCACTCCACTGCTGAACAAGCAGTGGACCCAAGGACCCGTCTGCTCATGTACAAAATGGTGAACGCAGGCATTCTGGAGAACATCAACGGCTGCATCAGCACTGGAAAGGAGTCTGTGGTGTTCCACGCAAATGGGGGAAGCATGGAGAATAATGCTGTCCCAGATGAGTGTGTGCTCAAGGTCTTcaagaccacactcaacgagtTCAAGAACCGTGACAAGTACATCAAGGATGACTACCGCTTCATAGACCGCTTCAGCAAGCTGAACCCCCGCACGATCATCCGCCTGTGGGCTGAGAAGGAGATGCACAACCTGGCTCGTATGAAGAAAGCTGGCATTCCATGCCCCGAGGTGGTGGTTCTGAAGAAGCACATCCTTGTGATGTCGTTCATTGGCAAGGACCATGTGCCGGCTCCCAAACTGAAGGAGGCCATGTTGGGCTCTGAGGACATGAAGAGGGCCTATTACCAAGTGGTTCATATGATGCAACAGTTGTATCAGGAGTGTAACCTTGTCCACGCTGACCTGAGTGAATACAACATGCTGTGGCATGAGGGCAAGGTTTGGCTGATTGATGTGAGTCAGTCCATCGAGCCCAATCACCCTCACAGCCATGAGTTCCTATTCAGGGACTGCAGGAACGTGGCCACGATTGAGGCACTGGAGAAGATGAATGAGGACCACGTGCAGAGAAGGGGCAAGAAAATGTACAACTTCAGCGACGGAGGACCTCCCCTATTACACGACGATGATTAACAATCAGATATTAGACACCATGAATAGTTACATGGAACCTGTTTGGGTGATTGTTTGAGAGAATGGGTCGAGTAAACCCCCCCATGGTCTCAGTGAGGTATGCAAGAGGTCGAAAGGTCGCTGCATCCTAAGATGGTGTCATAGGCTTCATTGGGCTAAAAAGGCTCCAAACCACCTTCCATGAAATGTCAACATCTCATTCCGTTACTACGGCTGTAAATGGAATGGATGGGGATGTCTGACGGGGTACATGACAGACTGCGTCTACATGCACACACAATAATTGCTTTTTAAATTAGAGTATTAGTAACCAGCATTCATGACATTATGAACAAGTTATCTTCTCAAGTAAACTGAGCTCGAATGAAAAGAGTTTTGCGTAATGTTCTGAATGAAACAAATTGTCATCCAACATTGTGATGGAGAGCCCAAAGTATCAGTGAATATTTTAATCATGAAAAGGGGCTGTCTTGACTGAAGACAGAATGAGTTGTTTTGCATTGAGGTCCGTTGTTCTTACAATGGAGCTGTCATGTTTGTGTACTCTGTCATTTCAATATTATGGTGGAAATAAATGGTAAAAATAA
>XM_036943922.1
GTTGGTTTGCGGACCGCCATTATGTCATGGAAGAAGAGAAGGTGACGTCATTTCCTTATTCAGGAAAAAGAACGTCAGTCAGATAATTTGCGCTGTAGCCCTTGAAGTCTTGTTATTTTGTGACATTAACgtttaaatactgtagtaattTGACTTACGCTAACACATTGACATTAAAGTTTTTATTTCAGAAAGCTAACGAAAGAGACTATCGTCGTAGCCAACAGTTTTGTACGTAGCTCTGCTTTTTAAACCTGTCCTTGCGCAAACATTATTCACCATCAAGCCCAACATCTGACTGTCATGGATCAAATATCGATCACTGCAGAAGTACCAAAGCTAATAATGTGAATGAATGGCCCTTCAGAGTCCATGGGGTGCCACCACAACCAAGGTGGTGTGTCCCTGCTCCTTCACTGATGTCATGAGCGAGCAGCTGGCCAAACAACTGGATGATGAAAGTCATTCTTTCCCTGATTTCTCAAAtgtCAGCGCTGCTCTGGATGCCGGTgaggagcgagagacagacagtgatctGATGCTGGCTCAGATGCTGCAGATGCAGTTTGACAAGGAGTTTGACACCCAGCTACGCACAGAAGAAAGGAAGTTCAATGGCGATAGCAAACTATCCATCTCCTTTGAGAACTATCGCATGGTGCACCCTTACGAGGCCAGCGGCAGCTCCGAGGATGAAGTTGATTGGCAAGATAGTTGTGACGACCCCTACAAAGCTGACAAACCCACGATAACTCCAAGGAGAGGCTTTACTGGGAAAGGCAAGAACATCACTACTAAGCACGATGAGGTTGTGTGTGGCAGGAAGAATACTGCACGCATGGACAATTTTGCCCCAGAGATCAATGTGGGAGATGGGCTTGGCATGGACCTGAAGCTTTCCAATCAGGTCTACAACTCCCTCAAGCAACACTGCTACTCCGAGCAGCGTCGCAGTGCACGGCTGCATGAGAAGAAGGAGCACTCCACTGCTGAACAAGCAGTGGACCCAAGGACCCGTCTGCTCATGTACAAAATGGTGAACGCAGGCATTCTGGAGAACATCAACGGCTGCATCAGCACTGGAAAGGAGTCTGTGGTGTTCCACGCAAATGGGGGAAGCATGGAGAATAATGCTGTCCCAGATGAGTGTGTGCTCAAGGTCTTcaagaccacactcaacgagtTCAAGAACCGTGACAAGTACATCAAGGATGACTACCGCTTCATAGACCGCTTCAGCAAGCTGAACCCCCGCACGATCATCCGCCTGTGGGCTGAGAAGGAGATGCACAACCTGGCTCGTATGAAGAAAGCTGGCATTCCATGCCCCGAGGTGGTGGTTCTGAAGAAGCACATCCTTGTGATGTCGTTCATTGGCAAGGACCATGTGCCGGCTCCCAAACTGAAGGAGGCCATGTTGGGCTCTGAGGACATGAAGAGGGCCTATTACCAAGTGGTTCATATGATGCAACAGTTGTATCAGGAGTGTAACCTTGTCCACGCTGACCTGAGTGAATACAACATGCTGTGGCATGAGGGCAAGGTTTGGCTGATTGATGTGAGTCAGTCCATCGAGCCCAATCACCCTCACAGCCATGAGTTCCTATTCAGGGACTGCAGGAACGTGGCCACGTTCTTCCAGAAGGGCGGGGTGTCTGAGTCCATGAACATGTACGAGCTCTTCAATGTTGTGTCTGGGCTGCAGCTCAGTGGTGACAGCGAGGCAGAGTTCCTTGCCCAGATTGAGGCACTGGAGAAGATGAATGAGGACCACGTGCAGAGAAGGGGCAAGAAAATGTACAACTTCAGCGACGGAGGACCTCCCCTATTACACGACGATGATTAACAATCAGATATTAGACACCATGAATAGTTACATGGAACCTGTTTGGGTGATTGTTTGAGAGAATGGGTCGAGTAAACCCCCCCATGGTCTCAGTGAGGTATGCAAGAGGTCGAAAGGTCGCTGCATCCTAAGATGGTGTCATAGGCTTCATTGGGCTAAAAAGGCTCCAAACCACCTTCCATGAAATGTCAACATCTCATTCCGTTACTACGGCTGTAAATGGAATGGATGGGGATGTCTGACGGGGTACATGACAGACTGCGTCTACATGCACACACAATAATTGCTTTTTAAATTAGAGTATTAGTAACCAGCATTCATGACATTATGAACAAGTTATCTTCTCAAGTAAACTGAG
>XM_021562525.2
TAAGGTTGGTTTGCGGACCGCCATTATGTCATGGAAGAAGAGAAGGTGACGTCATTTCCTTATTCAGGAAAAAGAACGTCAGTCAGATAATTTGCGCTGTAGCCCTTGAAGTCTTGTTATTTTGTGACATTAACgtttaaatactgtagtaattTGACTTACGCTAACACATTGACATTAAAGTTTTTATTTCAGAAAGCTAACGAAAGAGACTATCGTCGTAGCCAACAGTTTTGTACGTAGCTCTGCTTTTTAAACCTGTCCTTGCGCAAACATTATTCACCATCAAGCCCAACATCTGACTGTCATGGATCAAATATCGATCACTGCAGAAGTACCAAAGAGTCCATGGGGTGCCACCACAACCAAGGTGGTGTGTCCCTGCTCCTTCACTGATGTCATGAGCGAGCAGCTGGCCAAACAACTGGATGATGAAAGTCATTCTTTCCCTGATTTCTCAAAtgtCAGCGCTGCTCTGGATGCCGGTgaggagcgagagacagacagtgatctGATGCTGGCTCAGATGCTGCAGATGCAGTTTGACAAGGAGTTTGACACCCAGCTACGCACAGAAGAAAGGAAGTTCAATGGCGATAGCAAACTATCCATCTCCTTTGAGAACTATCGCATGGTGCACCCTTACGAGGCCAGCGGCAGCTCCGAGGATGAAGTTGATTGGCAAGATAGTTGTGACGACCCCTACAAAGCTGACAAACCCACGATAACTCCAAGGAGAGGCTTTACTGGGAAAGGCAAGAACATCACTACTAAGCACGATGAGGTTGTGTGTGGCAGGAAGAATACTGCACGCATGGACAATTTTGCCCCAGAGATCAATGTGGGAGATGGGCTTGGCATGGACCTGAAGCTTTCCAATCAGGTCTACAACTCCCTCAAGCAACACTGCTACTCCGAGCAGCGTCGCAGTGCACGGCTGCATGAGAAGAAGGAGCACTCCACTGCTGAACAAGCAGTGGACCCAAGGACCCGTCTGCTCATGTACAAAATGGTGAACGCAGGCATTCTGGAGAACATCAACGGCTGCATCAGCACTGGAAAGGAGTCTGTGGTGTTCCACGCAAATGGGGGAAGCATGGAGAATAATGCTGTCCCAGATGAGTGTGTGCTCAAGGTCTTcaagaccacactcaacgagtTCAAGAACCGTGACAAGTACATCAAGGATGACTACCGCTTCATAGACCGCTTCAGCAAGCTGAACCCCCGCACGATCATCCGCCTGTGGGCTGAGAAGGAGATGCACAACCTGGCTCGTATGAAGAAAGCTGGCATTCCATGCCCCGAGGTGGTGGTTCTGAAGAAGCACATCCTTGTGATGTCGTTCATTGGCAAGGACCATGTGCCGGCTCCCAAACTGAAGGAGGCCATGTTGGGCTCTGAGGACATGAAGAGGGCCTATTACCAAGTGGTTCATATGATGCAACAGTTGTATCAGGAGTGTAACCTTGTCCACGCTGACCTGAGTGAATACAACATGCTGTGGCATGAGGGCAAGGTTTGGCTGATTGATGTGAGTCAGTCCATCGAGCCCAATCACCCTCACAGCCATGAGTTCCTATTCAGGGACTGCAGGAACGTGGCCACGTTCTTCCAGAAGGGCGGGGTGTCTGAGTCCATGAACATGTACGAGCTCTTCAATGTTGTGTCTGGGCTGCAGCTCAGTGGTGACAGCGAGGCAGAGTTCCTTGCCCAGATTGAGGCACTGGAGAAGATGAATGAGGACCACGTGCAGAGAAGGGGCAAGAAAATGTACAACTTCAGCGACGGAGGACCTCCCCTATTACACGACGATGATTAACAATCAGATATTAGACACCATGAATAGTTACATGGAACCTGTTTGGGTGATTGTTTGAGAGAATGGGTCGAGTAAACCCCCCCATGGTCTCAGTGAGGTATGCAAGAGGTCGAAAGGTCGCTGCATCCTAAGATGGTGTCATAGGCTTCATTGGGCTAAAAAGGCTCCAAACCACCTTCCATGAAATGTCAACATCTCATTCCGTTACTACGGCTGTAAATGGAATGGATGGGGATGTCTGACGGGGTACATGACAGACTGCGTCTACATGCACACACAATAATTGCTTTTTAAATTAGAGTATTAGTAACCAGCATTCATGACATTATGAACAAGTTATCTTCTCAAGTAAACTGAG

Function

NR:

description
serine/threonine-protein kinase RIO3-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08872 RIOK3, SUDD; RIO kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036943923.1 False 2301 mRNA 0.47 12 18292027 18301287
XM_036943922.1 False 2204 mRNA 0.48 13 18292256 18301283
XM_021562525.2 True 2180 mRNA 0.48 13 18292256 18301287

Neighbor

gene id symbol gene type direction distance location
LOC110489728 NA coding downstream 108 18275476 ~ 18291919 (-)
LOC110489726 LOC106590361 coding downstream 83527 18196075 ~ 18208500 (-)
cavin4b LOC106590360 coding downstream 113213 18169722 ~ 18178814 (-)
LOC118938947 NA coding downstream 194128 18096724 ~ 18097899 (-)
LOC110489722 LOC106590357 coding downstream 535505 17751248 ~ 17756522 (-)
unm_hu7910 LOC106590366 coding upstream 24023 18325310 ~ 18369234 (-)
LOC110489732 wdr48 coding upstream 72144 18373431 ~ 18384106 (-)
LOC110489734 exog coding upstream 291709 18592996 ~ 18607504 (-)
actriib actriib coding upstream 317383 18618670 ~ 18680053 (-)
xylb xylb coding upstream 485583 18786870 ~ 18849057 (-)
G1265310 NA non-coding downstream 10776 18280730 ~ 18281251 (-)
G1265271 NA non-coding downstream 79186 18212520 ~ 18212841 (-)
G1265270 NA non-coding downstream 80286 18211509 ~ 18211741 (-)
G1265260 NA non-coding downstream 96297 18195501 ~ 18195730 (-)
G1264941 NA non-coding downstream 124511 18167310 ~ 18167516 (-)
G1265371 NA non-coding upstream 133696 18434983 ~ 18436635 (-)
G1265452 NA non-coding upstream 270658 18571945 ~ 18572166 (-)
G1265453 NA non-coding upstream 272263 18573550 ~ 18574311 (-)
G1265454 LOC106579582 non-coding upstream 273380 18574667 ~ 18574949 (-)
G1265464 NA non-coding upstream 365779 18667066 ~ 18683212 (-)
G1265249 NA other downstream 107904 18183791 ~ 18184123 (-)
G1264199 LOC106590429 other downstream 829050 17461828 ~ 17462977 (-)
G1263444 NA other downstream 1645610 16645644 ~ 16646417 (-)
G1262745 NA other downstream 2015475 16276009 ~ 16276552 (-)
LOC110490929 LOC106590401 other downstream 2256905 15938237 ~ 16035283 (-)
G1265456 LOC106590371 other upstream 275252 18576539 ~ 18580163 (-)
G1266471 NA other upstream 807272 19108559 ~ 19109357 (-)
G1266708 LOC106590345 other upstream 1133731 19435018 ~ 19453770 (-)
G1267414 NA other upstream 1966679 20267966 ~ 20268488 (-)
G1267452 NA other upstream 1989063 20290350 ~ 20290673 (-)

Expression


Co-expression Network