Gene
RNA
| Item | Value |
|---|---|
| gene id | unm_hu7910 |
| gene name | LOC106590366 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 18325310 ~ 18369234 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: calponin homology domain-containing protein DDB_G0272472-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021562563.2 | False | 4516 | mRNA | 0.46 | 18 | 18325310 | 18365342 |
| XM_036943973.1 | False | 4570 | mRNA | 0.46 | 19 | 18325310 | 18365345 |
| XM_036943974.1 | False | 4566 | mRNA | 0.46 | 19 | 18325310 | 18365347 |
| XM_036943975.1 | False | 4581 | mRNA | 0.46 | 19 | 18325310 | 18365362 |
| XM_036943970.1 | False | 4640 | mRNA | 0.46 | 20 | 18325310 | 18365370 |
| XM_036943971.1 | False | 4634 | mRNA | 0.46 | 20 | 18325310 | 18365370 |
| XM_036943967.1 | False | 4692 | mRNA | 0.46 | 21 | 18325310 | 18365377 |
| XM_036943965.1 | False | 4843 | mRNA | 0.46 | 21 | 18325310 | 18365381 |
| XM_036943964.1 | False | 4896 | mRNA | 0.46 | 22 | 18325310 | 18365389 |
| XM_036943960.1 | False | 4948 | mRNA | 0.46 | 23 | 18325310 | 18365393 |
| XM_036943959.1 | False | 4964 | mRNA | 0.46 | 24 | 18325310 | 18365394 |
| XM_036943958.1 | False | 4971 | mRNA | 0.46 | 23 | 18325310 | 18365395 |
| XM_021562536.2 | False | 4988 | mRNA | 0.46 | 24 | 18325310 | 18365397 |
| XM_021562542.2 | False | 4943 | mRNA | 0.46 | 23 | 18325310 | 18365400 |
| XM_036943968.1 | False | 3155 | mRNA | 0.44 | 3 | 18344424 | 18352556 |
| XM_036943969.1 | False | 3176 | mRNA | 0.44 | 3 | 18344424 | 18352556 |
| XM_036943966.1 | False | 3192 | mRNA | 0.44 | 4 | 18344424 | 18352559 |
| XM_036943962.1 | False | 3480 | mRNA | 0.45 | 4 | 18344424 | 18353220 |
| XM_036943963.1 | False | 3459 | mRNA | 0.45 | 4 | 18344424 | 18353220 |
| XM_036943924.1 | False | 3732 | mRNA | 0.46 | 10 | 18344424 | 18365236 |
| XM_036943926.1 | False | 3717 | mRNA | 0.47 | 9 | 18344424 | 18365236 |
| XM_036943927.1 | False | 3711 | mRNA | 0.47 | 10 | 18344424 | 18365236 |
| XM_036943929.1 | False | 3696 | mRNA | 0.47 | 9 | 18344424 | 18365236 |
| XM_036943931.1 | False | 3687 | mRNA | 0.47 | 9 | 18344424 | 18365236 |
| XM_036943933.1 | False | 3672 | mRNA | 0.47 | 8 | 18344424 | 18365236 |
| XM_036943934.1 | False | 3666 | mRNA | 0.47 | 9 | 18344424 | 18365236 |
| XM_036943936.1 | False | 3651 | mRNA | 0.47 | 8 | 18344424 | 18365236 |
| XM_036943938.1 | False | 3648 | mRNA | 0.47 | 8 | 18344424 | 18365236 |
| XM_036943940.1 | False | 3597 | mRNA | 0.47 | 7 | 18344424 | 18365236 |
| XM_036943942.1 | False | 3552 | mRNA | 0.47 | 6 | 18344424 | 18365236 |
| XM_036943943.1 | False | 3540 | mRNA | 0.46 | 9 | 18344424 | 18365236 |
| XM_036943944.1 | False | 3525 | mRNA | 0.46 | 8 | 18344424 | 18365236 |
| XM_036943945.1 | False | 3519 | mRNA | 0.46 | 9 | 18344424 | 18365236 |
| XM_036943946.1 | False | 3504 | mRNA | 0.46 | 8 | 18344424 | 18365236 |
| XM_036943947.1 | False | 3495 | mRNA | 0.46 | 8 | 18344424 | 18365236 |
| XM_036943949.1 | False | 3480 | mRNA | 0.46 | 7 | 18344424 | 18365236 |
| XM_036943950.1 | False | 3474 | mRNA | 0.46 | 8 | 18344424 | 18365236 |
| XM_036943951.1 | False | 3459 | mRNA | 0.46 | 7 | 18344424 | 18365236 |
| XM_036943953.1 | False | 3456 | mRNA | 0.46 | 7 | 18344424 | 18365236 |
| XM_036943954.1 | False | 3411 | mRNA | 0.47 | 6 | 18344424 | 18365236 |
| XM_036943955.1 | False | 3405 | mRNA | 0.47 | 6 | 18344424 | 18365236 |
| XM_036943956.1 | False | 3360 | mRNA | 0.47 | 5 | 18344424 | 18365236 |
| XM_036943957.1 | False | 3605 | mRNA | 0.46 | 6 | 18344424 | 18369215 |
| XM_036943948.1 | False | 3770 | mRNA | 0.46 | 9 | 18344424 | 18369224 |
| XM_036943939.1 | False | 3943 | mRNA | 0.46 | 10 | 18344424 | 18369226 |
| XM_036943935.1 | False | 3897 | mRNA | 0.46 | 9 | 18344424 | 18369227 |
| XM_036943932.1 | False | 3966 | mRNA | 0.46 | 10 | 18344424 | 18369228 |
| XM_036943928.1 | False | 3947 | mRNA | 0.46 | 10 | 18344424 | 18369232 |
| XM_036943937.1 | False | 3994 | mRNA | 0.46 | 11 | 18344424 | 18369232 |
| XM_036943925.1 | True | 4017 | mRNA | 0.46 | 11 | 18344424 | 18369234 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110489729 | LOC106590364 | coding | downstream | 24023 | 18292027 ~ 18301287 (-) |
| LOC110489728 | NA | coding | downstream | 33391 | 18275476 ~ 18291919 (-) |
| LOC110489726 | LOC106590361 | coding | downstream | 116810 | 18196075 ~ 18208500 (-) |
| cavin4b | LOC106590360 | coding | downstream | 146496 | 18169722 ~ 18178814 (-) |
| LOC118938947 | NA | coding | downstream | 227411 | 18096724 ~ 18097899 (-) |
| LOC110489732 | wdr48 | coding | upstream | 4197 | 18373431 ~ 18384106 (-) |
| LOC110489734 | exog | coding | upstream | 223762 | 18592996 ~ 18607504 (-) |
| actriib | actriib | coding | upstream | 249436 | 18618670 ~ 18680053 (-) |
| xylb | xylb | coding | upstream | 417636 | 18786870 ~ 18849057 (-) |
| crygn2 | LOC106590379 | coding | upstream | 501992 | 18871226 ~ 18874224 (-) |
| G1265310 | NA | non-coding | downstream | 44059 | 18280730 ~ 18281251 (-) |
| G1265271 | NA | non-coding | downstream | 112469 | 18212520 ~ 18212841 (-) |
| G1265270 | NA | non-coding | downstream | 113569 | 18211509 ~ 18211741 (-) |
| G1265260 | NA | non-coding | downstream | 129580 | 18195501 ~ 18195730 (-) |
| G1264941 | NA | non-coding | downstream | 157794 | 18167310 ~ 18167516 (-) |
| G1265371 | NA | non-coding | upstream | 65749 | 18434983 ~ 18436635 (-) |
| G1265452 | NA | non-coding | upstream | 202711 | 18571945 ~ 18572166 (-) |
| G1265453 | NA | non-coding | upstream | 204316 | 18573550 ~ 18574311 (-) |
| G1265454 | LOC106579582 | non-coding | upstream | 205433 | 18574667 ~ 18574949 (-) |
| G1265464 | NA | non-coding | upstream | 297832 | 18667066 ~ 18683212 (-) |
| G1265249 | NA | other | downstream | 141187 | 18183791 ~ 18184123 (-) |
| G1264199 | LOC106590429 | other | downstream | 862333 | 17461828 ~ 17462977 (-) |
| G1263444 | NA | other | downstream | 1678893 | 16645644 ~ 16646417 (-) |
| G1262745 | NA | other | downstream | 2048758 | 16276009 ~ 16276552 (-) |
| LOC110490929 | LOC106590401 | other | downstream | 2290188 | 15938237 ~ 16035283 (-) |
| G1265456 | LOC106590371 | other | upstream | 207305 | 18576539 ~ 18580163 (-) |
| G1266471 | NA | other | upstream | 739325 | 19108559 ~ 19109357 (-) |
| G1266708 | LOC106590345 | other | upstream | 1065784 | 19435018 ~ 19453770 (-) |
| G1267414 | NA | other | upstream | 1898732 | 20267966 ~ 20268488 (-) |
| G1267452 | NA | other | upstream | 1921116 | 20290350 ~ 20290673 (-) |
