LOC110489736 (LOC106590352)


Basic Information

Item Value
gene id LOC110489736
gene name LOC106590352
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18850631 ~ 18855321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562577.2
acgtccggttgtgatacagcctggaatcaaaccaggctctagcactgagaagcagtgccttagaccactgtgccactcaggagccctaagCATTGGACTCCCGAGTTGACTAAGCATTGAACTAAGGGCTAATTATCTGTGAGTTTTTTTGCAACGCAGGTACACTTGCTAGATGTGTCAGCACCACCATGTCATCCATTTAAGTCATCCCTCCAAAGCAGGACTCACCCACAACTTCAACAACACTGTGTCAACATACTGTGTCAGTGCCAGCCCAAGTAACAACTGGGTCATTCAACACATTTTTCCAGAACATAATATATGAACATGTAAATCAATGTTGATTGTTAGGCCTACAGATAATAAAAGACTACTGGATTCTATAGTATGAAGATGTAAGTAACTTGATGTTTGTCTAGCCTAGTTTACTGTAGGCCATGTATTATGTTTGGAACTTTCCTTCATTATTATGTTTGGAACTTTCCTTCATAATATACTGACCTATTCACCTATTTTACTTTAGCCTATCATAAACATAAGCAGTTTTCACTAAAACTACACTACACATACACCTACATGGTCTACTGTAAAAGAAAAGGGCAACCTTCAATTGTCCTCAATTGTTTGCACATCACTCAAACTTTTGAACCACTTTAGACTAGCCTACACTACACCTACTGAGATGTAGACAGTGCCGTATAGGCTATACTGCCGGCAGCAGGTGGATAACTACTTATCATTCTATCAGCTGTGCCTTCTTTGATTGGGGAAATAAAAATCAAAATTGGTTATCAATGCAAAAAGGATGTTGTCGTGCTGCTGTTCCAATTCGAAGTGTTCCTGGGAACAGATAAGTTCCCGGAGTCGCAGTGAAACCGCCAACGGCGACGTGAATCATTTGGTCGAGGAAGCGGACCAAAGCGAAATTGTGGCGGACCTAACCAGGATGGACATTGCACTTTTGACGGAACAGTACAACTTGACTAAAGAGAAACAAAAGCGTCAGACCCTGGTGGTTTTATTCAGACAAGTTTCAACTGATGATGCAGCAGAAATCAGTGGGCAAGCCCTGGTCAATGTAGTCCCAGTCAACCAGGAGATGAAGAGCAAACACGAGAGGAAGAGGTCGGTCTCAGAGTCTGAGAATGACTTTGTTGGGGACCTGGAGAGAGCCCCATGGCGCAAACCCTTGGGCATCCACCGACAGGCCAACGTCATTATAACACCACATACAAACCCCACAATCACGGGCAGTAAATCAAGTTTTACTTCGCTGTCTGAAGACTTTCCTGAGACGTCCAGTGAGAAGGAGTTGGGGGATTCTATTTCTACCCATCCTGTAGAGTTGAGTACCAGTAACAGCAGTTCAGGCTCCCGGAAGTTCTCAGCCCCAGCCATTTTGTCCAGACAACTGAGTTTTGGGGGGCAGCGGccgcctcttctctcctcttgcCCCCATCACCACTACCCCTTCCCCCAAAGAAAAGGGCCCAAGAAGTCGGAAGCTGCTAGGAGACTTGGGATGTACTCATCATTCTGATCAGATTATAGGAGAGGGAAAGAGTCCGTTACAGTCTATAGTGCAATAGAGAATGTTTTCTATGTTTCTGCAGAATTAAACTAATCTTGTTGTTGCTATAAAGGACATTTGGTATGCAGCCATGCAAATAATATAATGTAAGATGTCGTGCCTTGCCCTATATAGGATCATATGTTAACGTTCGGGTTTCATCCCAGCTGAGAAGGGGATCCATCTCCACCCATTGAGTGAAATACTCAATGTCTTGAAACGTTATTTTTCCCAGAGAGCAAACGATTAGGCCTACAGACAATGGTGCGATGTTTGGTTTTTAATTACAGCATTCATCCCAGGAAAATATTCAAGAGACCATTTACAGACCATTGTTAGGGTAATAACAGGTGGAATAAAATATAactaaacatttaaatgttttagttACATTATCCCAATGAGTTACACCATAACGCAGGCATTATTTTTATTACTACAAACCCTTTTTAAACAGTGTGTGTTTGAGCTACATGGGTTGTGCCATTGGATTTGTCTATTTATTCTGTATCTGTACATaccaaccattagtctgtgtgattaacgggggctgagagtggtgtttgtgagacaagggcAGATCCTGAAGGGGCCCGGGTcttttttacaaaaatgtctgTAAAGTCCGTATGGTTTGAACTACACACTTAAAAGCCATTATGAAAaactgagactctcacgaacatgcaCATGTTTTGCTCAAGAGTCATTAGAAGGTAAAGGGGTTCTTGTACAtagaaaatcaaaggaaatcccATGACATAGTGTCTGTAATAAGCTCACAGTTTCTGTCCCAAACACcagactagttggatattcatttccCAGTGAGGAAACAATTTCTATAGTTACAACATTTACATAAATTAATTTAGTCAGGTTTTTGCTTCGGCTGAGCTTCTTTTTTGTTTGTTGACATTTGTCAATTAAACTCATGAATACAACTGTTTATGTCAAATTAACTTGTGTTCTACctgtagccctggttgtcctgaaaggaaaatggTAAAACACTTAATTGTGAGgttaaatataagggctggacatgcagataaaTAAAAGTCAGATTAATGAAAAGACTATTTTTACTGGTGTCTCGGGACTGATAGGGTTCAATTaaaaacacaggaggttggtggcaccttaattggggaggaagaTCTTGTGGTAAAGGCTGGAGCGGAATACATGGAATGATAACAAAGACATGACACACACGggtaccatgtgtttgatgccatgtCATTTGCTTCTTTCCAGCCATTCTTATGAGCCGtcgtcccctcagcagcctccactggaaaTAATGACAGGCTGTTGCCACTGAACAAATATGTGACTTGAAAATGACTGATTATTCTCTGGTGTGCATTTTATTGTCATACAATAAGATGAATCCCAGCAATACAGATGGAATGTGAAGACATGATGCATTAATTAAATATAGTAGCCTGTATACAGTACTACCAAATACATAATGAACATTTTAAAATCACATCACAACTGTTTGTATGAGTCATTTTAAAAGGTAGGCCCTACCATGATTTTGATGTTCTTCCCTCTATTAGACGGTGTGTTGTCACGTGTCAGTCTCTGCACGTGTTGTAAACTCAGTGTTGTCAGCTTCATAGTCTCAGGACCGAGCCCATCTCCTAATCTGACCCCAAACATTTAGATGAAGGTTGTGTGCACAATTTATTATGCATTGTCATTGGAGCATTGTTATTGCAGAGTTGAAAAGCCTACTGAAGATTTTAGTATATTGTCAATACAAGGATTGCAAATCTGGGCTGAAACAAGGCACATGATTAGGCTACAGACAATGGTGCACTTTTGTTTTTAATTACAGCATTCATCCCAGGAAAATATGCAAGAGTCCACTTACAAATTGTTAGGGTATTAACAGGTAGAATAAAACATAACGAAACATTGTATTAGCTACAttaacccaatgagtcccacCGTAACGCAGGCACGTTTTGGACTTCTATCCCCTTTTAAACATTTTGTGTTGGAGCTACATGGGTTGTGCCGggcaccgaagacgtggatgacgatttaaggcagccccccgcaccgggtaaaatgcagaagacacatttcagttgaaggcattcagttgtacagctgactaggCATCCCCTTTTCCCTTTGGATTTGTCGATTTCTTCTGTATCTGCACATACCAACTGCTAGTATGTATGATTAACAGGGGCTGAGCTAGAGTGGTGTCTGAGAGACAAGGGCGGGTCCCGAAGGGGCAGGGTCTTTTTTACAAAGACGTCTGTAGAGTCCGTATGGTTTGAGCTACACACTTAAAAGCCATCTATGAAAAACAGACTCTCACAAACAAGCACATGTTTTGCTCAAAAGTCGTTAGAAGgggttctacatagaagatcataggaaatcccaggacgtaatgtctataatactgtaataagctcagtttgtcacaaatgccaaacagttgtcactgactagttggatattaattTCCCAGTGTGCAAACGATTTCTGTACTTACAgcatttatatacactaccgttcaaaagtttggggtcacttagaaatgtccttgttttttgaa

Function

NR:

description
uncharacterized protein LOC110489736

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562577.2 True 4160 mRNA 0.41 2 18850631 18855321

Neighbor

gene id symbol gene type direction distance location
scn5lab LOC106590371 coding upstream 270515 18390157 ~ 18580116 (+)
LOC110489731 LOC106590368 coding upstream 525338 18306214 ~ 18325293 (+)
LOC110489727 LOC106590362 coding upstream 575037 18227829 ~ 18275594 (+)
dnah5l LOC106590358 coding upstream 679270 18101687 ~ 18171361 (+)
LOC110489724 LOC106590359 coding upstream 758500 17989845 ~ 18092131 (+)
LOC110489737 LOC106590377 coding downstream 4376 18859697 ~ 18866106 (+)
lama1 LOC106590346 coding downstream 399319 19254640 ~ 19322131 (+)
LOC118938968 NA coding downstream 437309 19292630 ~ 19292772 (+)
LOC110489742 LOC106590345 coding downstream 547446 19402767 ~ 19546571 (+)
LOC110489743 LOC106590344 coding downstream 703732 19559053 ~ 19569524 (+)
G1265635 xylb non-coding upstream 14345 18831925 ~ 18836286 (+)
G1265593 NA non-coding upstream 64466 18785951 ~ 18786165 (+)
G1265588 NA non-coding upstream 72363 18778053 ~ 18778268 (+)
G1265559 NA non-coding upstream 107489 18742865 ~ 18743142 (+)
G1265546 NA non-coding upstream 114819 18735579 ~ 18735812 (+)
G1265677 NA non-coding downstream 63529 18918850 ~ 18919369 (+)
G1265685 LOC106590348 non-coding downstream 88764 18944085 ~ 18958062 (+)
G1265750 NA non-coding downstream 192783 19048104 ~ 19136006 (+)
G1265790 NA non-coding downstream 256244 19111565 ~ 19112661 (+)
G1265889 NA non-coding downstream 440611 19295932 ~ 19296412 (+)
mcmdc2 mcmdc2 other upstream 2956467 15885437 ~ 15895996 (+)
G1261980 NA other upstream 3114214 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 3144092 15696896 ~ 15706601 (+)
LOC110489660 pan3 other upstream 3655686 15166247 ~ 15194945 (+)
G1260946 LOC106590444 other upstream 3828578 15020992 ~ 15022053 (+)
epb41l3a LOC106590342 other downstream 818792 19598284 ~ 19680110 (+)
G1267949 pck2 other downstream 1984974 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 2930900 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 4277538 23132828 ~ 23146739 (+)

Expression


Co-expression Network