LOC110489739 (LOC106590380)


Basic Information

Item Value
gene id LOC110489739
gene name LOC106590380
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 18882806 ~ 18916856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562585.2
CATTAATAATTCAGATAGTATTGCTTTGGGGAGTGACGCGAAGGATACAGATGCTCGACTACTTTCCCCCCGTTTAAATGGTTTTAATTCCACGCGTAATTTCTGCTCCTTATCGTGTTCGACATAGCATTTGACATCTGTTCCAGTTTTTGATCGGTTGTGTAGGCTTCTGTATGTCGATATTGATGTAGTGTCGTTAAAAGATGCCTCAACCGAAATCCCGAAAAATCGCCGTCCTGGGATACAGATCCGTGGGGAAATCTTCCTTGACTATACAGTTTGTGGAAGGCCAGTTTGTCGACTCATATGACCCAACTATAGAAAAcaCATTTACAAAGATGATCACAGTGAATGGTCAGGAGTACCTCCTGCAGTTGGTGGACACAGCCGGACAGGATGAATACTCCATTTTCCCACAGACCTACTCCATAGACATCAACGGCTACATTTTGGTGTATTCTGTCACTTCCAATAAAAGTTTTGAAGTAATAAAAGTTATCCACGAAAAATTATTGGATATGGTTGGTAAAGTACAAGTACCCATCATGTTGGTCGGAAACAAGAAAGATCTACACATGGAACGTGTAATCAGTTGTGAAGAAGGAAAAGCGCTGGCTGACTCATGGAACGCAGCATTCATGGAGTCCTCCGCTAAAGAGAAccagACAGCGGTGGAGGTGTTCAAGAGGACCATCCTGGAGGCGGAGAAGATGGAGGGGGGAGCCCCCCAGGGCAGGACATCCTGCTCCCTGATGTAACCCTCCTTTTCCCTGGCCCCCCAGGCCCTCGAACACCGTCCCCAACCACAGCACTGGACACTGGGAAATCCCTCTACTTGAAGTGGCTAACTGCCTGTTTTCCTCCCTCGAGAAACATCTGTCTTTTTCTTTTCTACATTTCTTTTTTCATTTCCAGAAGGACAGACGAAGACTTCGACATTAAGAGTAACAAGCGATCCTAGCTTAGGGTACACCCGTCTTGCTCCCCCCGACTTCCCCTTTTTCTGAGAAACCAAATGTGGTGAAATATCTAGCCTCATTTAAAGCCTGTAATCTCTTTTCTACCTGACCTCCCTGCCCCTCCCTTCCCCTTGAAAAGTTTGTATATTGTATTTCTtaaaatgttattattatggCCACTATAGTTGGCCAGCATTCATTTGCTAGTCTAGTGAATGTTGATTATGTTTTTTTGATTGTAATCATTAAATCAGCATATTGTTTCACTA
>XM_021562586.2
CATTAATAATTCAGATAGTATTGCTTTGGGGAGTGACGCGAAGGATACAGATGCTCGACTACTTTCCCCCCGTTTAAATGGTTTTAATTCCACGCGTAATTTCTGCTCCTTATCGTGTTCGACATAGCATTTGACATCTGTTCCAGTTTTTGATCGGTTGTGTAGGCTTCTGTATGTCGATATTGATGTAGTGTCGTTAAAAGATGCCTCAACCGAAATCCCGAAAAATCGCCGTCCTGGGATACAGATCCGTGGGGAAATCTTCCTTGACTATACAGTTTGTGGAAGGCCAGTTTGTCGACTCATATGACCCAACTATAGAAAAcaCATTTACAAAGATGATCACAGTGAATGGTCAGGAGTACCTCCTGCAGTTGGTGGACACAGCCGGACAGGATGAATACTCCATTTTCCCACAGACCTACTCCATAGACATCAACGGCTACATTTTGGTGTATTCTGTCACTTCCAATAAAAGAGTACCCATCATGTTGGTCGGAAACAAGAAAGATCTACACATGGAACGTGTAATCAGTTGTGAAGAAGGAAAAGCGCTGGCTGACTCATGGAACGCAGCATTCATGGAGTCCTCCGCTAAAGAGAAccagACAGCGGTGGAGGTGTTCAAGAGGACCATCCTGGAGGCGGAGAAGATGGAGGGGGGAGCCCCCCAGGGCAGGACATCCTGCTCCCTGATGTAACCCTCCTTTTCCCTGGCCCCCCAGGCCCTCGAACACCGTCCCCAACCACAGCACTGGACACTGGGAAATCCCTCTACTTGAAGTGGCTAACTGCCTGTTTTCCTCCCTCGAGAAACATCTGTCTTTTTCTTTTCTACATTTCTTTTTTCATTTCCAGAAGGACAGACGAAGACTTCGACATTAAGAGTAACAAGCGATCCTAGCTTAGGGTACACCCGTCTTGCTCCCCCCGACTTCCCCTTTTTCTGAGAAACCAAATGTGGTGAAATATCTAGCCTCATTTAAAGCCTGTAATCTCTTTTCTACCTGACCTCCCTGCCCCTCCCTTCCCCTTGAAAAGTTTGTATATTGTATTTCTtaaaatgttattattatggCCACTATAGTTGGCCAGCATTCATTTGCTAGTCTAGTGAATGTTGATTATGTTTTTTTGATTGTAATCATTAAATCAGCATATTGTTTCACTA
>XM_021562587.2
CATTAATAATTCAGATAGTATTGCTTTGGGGAGTGACGCGAAGGATACAGATGCTCGACTACTTTCCCCCCGTTTAAATGGTTTTAATTCCACGCGTAATTTCTGCTCCTTATCGTGTTCGACATAGCATTTGACATCTGTTCCAGTTTTTGATCGGTTGTGTAGGCTTCTGTATGTCGATATTGATGTAGTGTCGTTAAAAGATGCCTCAACCGAAATCCCGAAAAATCGCCGTCCTGGGATACAGATCCGTGGCATTTACAAAGATGATCACAGTGAATGGTCAGGAGTACCTCCTGCAGTTGGTGGACACAGCCGGACAGGATGAATACTCCATTTTCCCACAGACCTACTCCATAGACATCAACGGCTACATTTTGGTGTATTCTGTCACTTCCAATAAAAGTTTTGAAGTAATAAAAGTTATCCACGAAAAATTATTGGATATGGTTGGTAAAGTACAAGTACCCATCATGTTGGTCGGAAACAAGAAAGATCTACACATGGAACGTGTAATCAGTTGTGAAGAAGGAAAAGCGCTGGCTGACTCATGGAACGCAGCATTCATGGAGTCCTCCGCTAAAGAGAAccagACAGCGGTGGAGGTGTTCAAGAGGACCATCCTGGAGGCGGAGAAGATGGAGGGGGGAGCCCCCCAGGGCAGGACATCCTGCTCCCTGATGTAACCCTCCTTTTCCCTGGCCCCCCAGGCCCTCGAACACCGTCCCCAACCACAGCACTGGACACTGGGAAATCCCTCTACTTGAAGTGGCTAACTGCCTGTTTTCCTCCCTCGAGAAACATCTGTCTTTTTCTTTTCTACATTTCTTTTTTCATTTCCAGAAGGACAGACGAAGACTTCGACATTAAGAGTAACAAGCGATCCTAGCTTAGGGTACACCCGTCTTGCTCCCCCCGACTTCCCCTTTTTCTGAGAAACCAAATGTGGTGAAATATCTAGCCTCATTTAAAGCCTGTAATCTCTTTTCTACCTGACCTCCCTGCCCCTCCCTTCCCCTTGAAAAGTTTGTATATTGTATTTCTtaaaatgttattattatggCCACTATAGTTGGCCAGCATTCATTTGCTAGTCTAGTGAATGTTGATTATGTTTTTTTGATTGTAATCATTAAATCAGCATATTGTTTCACTA

Function

NR:

description
PREDICTED: GTP-binding protein Rheb-like isoform X2

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562585.2 False 1228 mRNA 0.44 8 18882806 18916856
XM_021562586.2 False 1171 mRNA 0.45 7 18882806 18916856
XM_021562587.2 True 1156 mRNA 0.44 7 18882806 18916856

Neighbor

gene id symbol gene type direction distance location
crygn2 LOC106590379 coding downstream 8582 18871226 ~ 18874224 (-)
xylb xylb coding downstream 33749 18786870 ~ 18849057 (-)
actriib actriib coding downstream 202753 18618670 ~ 18680053 (-)
LOC110489734 exog coding downstream 275302 18592996 ~ 18607504 (-)
LOC110489732 wdr48 coding downstream 498700 18373431 ~ 18384106 (-)
LOC110490935 LOC106579657 coding upstream 1929 18918785 ~ 19220905 (-)
LOC110490936 lrrc30 coding upstream 319244 19236100 ~ 19237676 (-)
LOC110489741 LOC106590347 coding upstream 405169 19322025 ~ 19372405 (-)
LOC110489747 LOC106590340 coding upstream 797452 19714308 ~ 19718519 (-)
LOC110489749 tws1a coding upstream 843770 19759819 ~ 19768382 (-)
G1266325 NA non-coding downstream 22540 18859726 ~ 18860266 (-)
G1266320 NA non-coding downstream 31917 18850600 ~ 18850889 (-)
G1265547 NA non-coding downstream 147170 18735271 ~ 18735636 (-)
G1265464 NA non-coding downstream 199594 18667066 ~ 18683212 (-)
G1265454 LOC106579582 non-coding downstream 307857 18574667 ~ 18574949 (-)
G1266384 NA non-coding upstream 41368 18958224 ~ 18959762 (-)
G1266411 NA non-coding upstream 80118 18996974 ~ 18998548 (-)
G1266424 NA non-coding upstream 99373 19016229 ~ 19083858 (-)
G1266457 NA non-coding upstream 161300 19078156 ~ 19078815 (-)
G1265456 LOC106590371 other downstream 302643 18576539 ~ 18580163 (-)
G1265249 NA other downstream 698683 18183791 ~ 18184123 (-)
G1264199 LOC106590429 other downstream 1419829 17461828 ~ 17462977 (-)
G1263444 NA other downstream 2236389 16645644 ~ 16646417 (-)
G1262745 NA other downstream 2606254 16276009 ~ 16276552 (-)
G1266471 NA other upstream 191703 19108559 ~ 19109357 (-)
G1266708 LOC106590345 other upstream 518162 19435018 ~ 19453770 (-)
G1267414 NA other upstream 1351110 20267966 ~ 20268488 (-)
G1267452 NA other upstream 1373494 20290350 ~ 20290673 (-)
G1268555 LOC106590243 other upstream 2041516 20958372 ~ 20960089 (-)

Expression


Co-expression Network