LOC110490936 (lrrc30)


Basic Information

Item Value
gene id LOC110490936
gene name lrrc30
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19236100 ~ 19237676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564356.2
ATGGGAGCCAAGCAGTccaaggaggaggagatgaagagacAGGTGAGGAAGAGTGCCTGGCGTGAGGACAGCTTGACGTCAGTGGAGCGGATCCCAaaccacacatacaaacagtgGGGCTACAGCAGGCTGAGCCTGGCCCGCCTCAGCCTCAAGGAACCCCCAGAGGAACTGTGGGATGTGATGAAGCTTGAGGAGCTCAATCTGTCGTTGAACTGCCTACGGGCTCTGCCCCCCGCCCTTAGCATCCTCAGCAACCTGGTGGTCCTCAACCTgaaCCAGCTGACCAGCCTACCCCCGGAGATCAGCCAACTCAGGCACCTCCGTGTCCTGTTCTGCTATAGCAACCAGCTGACTGAGGTCCCAGAGGAGCTGGGAAACTGCACTAGGCTGGAGGTCCTTAGCCTGACCAACAACAAGATATCTGGCCTCCCCGCTTCCTTCACCAGCCTGACCTGCTTGCGCAAACTCAACCTCAGCCACAACAAAATTGTTCACATCCCCGGCTGCATCTACATCATGAAGAGTCTGGTGTTCCTCCACCTGGCCTGCAACAGGCTGGAGTGCATCGCCGATAGCATCGCGGCGCTGGTGGAGCTCAAGATCCTCATCGTGGAGGGGAACGAGATCCACTCGCTCCCCAAGATGATCTGCTGCCTGACGCGCCTGGAGCTTCTCAACGTGGACTTCAACGACATCCAGAACGTGCCCCAGGAGATGCACCAGCTCAGCAGGCTGGAGAAGCTGGCCTGCCACCCCTTGGATAAGGGGCTCCACATCATGCAAAACCCCTTGCAGGAGCAAATCAAAGAAGTGCTGGAAGGAGATCTCACCACCCTGTTTAATTATCTCAAATTTAATTGA

Function

symbol description
lrrc30 Predicted to enable protein serine/threonine phosphatase activity. Predicted to be involved in signal transduction. Predicted to be active in cytoplasm and intracellular membrane-bounded organelle.

NR:

description
leucine-rich repeat-containing protein 30-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564356.2 True 864 mRNA 0.56 2 19236100 19237676

Neighbor

gene id symbol gene type direction distance location
LOC110490935 LOC106579657 coding downstream 15195 18918785 ~ 19220905 (-)
LOC110489739 LOC106590380 coding downstream 319244 18882806 ~ 18916856 (-)
crygn2 LOC106590379 coding downstream 361876 18871226 ~ 18874224 (-)
xylb xylb coding downstream 387043 18786870 ~ 18849057 (-)
actriib actriib coding downstream 556047 18618670 ~ 18680053 (-)
LOC110489741 LOC106590347 coding upstream 84349 19322025 ~ 19372405 (-)
LOC110489747 LOC106590340 coding upstream 476632 19714308 ~ 19718519 (-)
LOC110489749 tws1a coding upstream 522950 19759819 ~ 19768382 (-)
LOC110490939 LOC106590335 coding upstream 535775 19773451 ~ 19933165 (-)
impa2 impa2 coding upstream 707331 19945007 ~ 19950792 (-)
G1266424 NA non-coding downstream 152242 19016229 ~ 19083858 (-)
G1266457 NA non-coding downstream 157285 19078156 ~ 19078815 (-)
G1266411 NA non-coding downstream 237552 18996974 ~ 18998548 (-)
G1266384 NA non-coding downstream 276338 18958224 ~ 18959762 (-)
G1266552 NA non-coding upstream 127936 19365612 ~ 19426849 (-)
G1266686 NA non-coding upstream 173172 19410848 ~ 19427740 (-)
G1266819 NA non-coding upstream 355215 19592891 ~ 19593178 (-)
G1266880 LOC106590342 non-coding upstream 422198 19659874 ~ 19662581 (-)
G1266910 LOC106590339 non-coding upstream 471286 19708962 ~ 19709962 (-)
G1266471 NA other downstream 126743 19108559 ~ 19109357 (-)
G1265456 LOC106590371 other downstream 655937 18576539 ~ 18580163 (-)
G1265249 NA other downstream 1051977 18183791 ~ 18184123 (-)
G1264199 LOC106590429 other downstream 1773123 17461828 ~ 17462977 (-)
G1263444 NA other downstream 2589683 16645644 ~ 16646417 (-)
G1266708 LOC106590345 other upstream 197342 19435018 ~ 19453770 (-)
G1267414 NA other upstream 1030290 20267966 ~ 20268488 (-)
G1267452 NA other upstream 1052674 20290350 ~ 20290673 (-)
G1268555 LOC106590243 other upstream 1720696 20958372 ~ 20960089 (-)
G1269265 NA other upstream 2565011 21802687 ~ 21803352 (-)

Expression


Co-expression Network