LOC110489743 (LOC106590344)


Basic Information

Item Value
gene id LOC110489743
gene name LOC106590344
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19559053 ~ 19569524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562599.2
GATGTTTCTGAGTGCGCCAGGTGCTTTGCGCAGGTCATTTGCAGACACTAACACAAGTCCATCGTTCCTACTTCTAGCCAAAAACGTTGGAGAGGTCTCACCACACGCGTTCTGGACGTTAGCAGCAGCACAACGCTTCAGATCCAAACATGGATGGGGAGTGTTCGTTACCGAGAGGATAGTTAAGAAGGCAATTATTCAAATCCTGCAGCAATTTCAGTCGATGGCTGCTGTGGTGGTATCATAGCAACAACACCCAATAATTAGAAAAATATTAACAATAGCCCCGTATCACCCGCTGCCTGCCAGCACAAAACTCTCCATTACAAACTCGGCGCGCTGCTCTCTGACAAGACACTCCCTGGAGAGGAGCGCGGGTGAGCCGGATAAAAAGGATAGTATTTTTCTCCCAGACGCAGGTTGACTTGGAAAGGCTTAAGCCTCGATGAAAACTACATCGCCGAGTGACTGTGACTGGATCCTCTTGCTAAAGAAGATCGCCAGATCCTTTGCAAGAATGGAATTACATGGAATAAACGAAGTTTCCTTTTACGACATGAGATATCCGCGCCCGGGAATCGAAACTTTCTTTCAGGGTTTTTAATATGTGGTTGCATTGCCTGTCTTCTATGcctcagGATGAGTGAGTGAGCAGTCCGTCTGCCAAGTCCCAACCATGATCGCCACCGGAGGCCTGCTGCGGATCAACAGGAGGCAGGACTCGCTGCGCTCTAAGAGCCGTGCCGAGAACAAGCGTAAGAGAAAAGCCAAGAAGAAGCGGAAGAATGAGGTGGTGGTGGTCAAGGGCAAGCTGAATCTCTGCTCCATCTCGGGGGTGGTGGCGGCTATTGGGATTCTAATCCTACTGGTGGGCATTGCCATGGCCATACTGGGTTACTGGCCCAGGGAGAGCCCACTGTATCCGGATCCGCCCAAAATCCAGATAATTTACAACAAAAAGGAGGAGTCAGGGCTGACAGGCAACTGGACGAACAACGCGAAGGACGGATTTCACTTGGATGGGGATTTGGTCAGTAACAATCGTTCCAACGGCACAGGTTTAGAGCAGCCGTCTATGGGCTTCCTGGCTGAGTTCTTGGATAAGTACCTGTACTCGGACAAGTTGAAGGTGTTCGGTCCCCTCATCATGGGCATTGGCATCTTCCTGTTTATCTGCGCCAATGCGGTACTGCATGAGAACCGCGATAAGAAGACCAAAATCATCAACCTGAGGGACATCTACTCCACTGTCATTGACATCCACAGCTTGCGGACTAAGGAGAACATGCCGCTCAATGGCTTTGTGAACTACATGCAGTCCAAAGGGGTGGAGGGCAAACCTAGCGCTGCATATACCGCCGCCCTACTAGCCAAAGGCACTTGGCCATCGGGAGGTTCGCCGGACGAGGGCAGCCTGGGCCCCTCCAGATGCCACTCCCTGACTAGGTCAAGGGTGTCATCTCTAGAGAGGCAGACGTTCACCGACACAGTCTACACTATCTCCAGACACAGCGGGGCCGGCCAGCAGAGCAGCCCGATTTCCATCCCCAAACGGTGGGAGACCCGGACAATAGTGGCCTCCTCGGTCAACGCCTTCACTCTCCCCATGACCAAACCCAACTATCGGGCCAACCAGCATCAGCGCAGGCCTTCAGCCAAAGCAGAGGCAGGGAGGAGCAGGGCTGCCCTGTGTGACTCTGGCGAAGAAGACGAAGCCTGGGTTGGGTACGGTGTTCCAGAAACCACCACCCAGGCAAATGTGGAGACTTTGCAGACGGCTATGCTCCTGCCTCAGGACTCTGTGGAGGTGTACAAGAGCAGTGGTAGCCTCCAGGGGGCGCTTCAGGGCTCCCAGATCCAGCTGCTCCCCTCGTCCCCCACTGGCCCCAGGGTGATGGGTTCCCACTTGTCCCTCAGCGCCCTGACGGACTACTCCAGGTCCATTGACCTGGGCATCACTCCATCCACCCCCACCGAGTGGAAGGTGGAACGGTCCCGGCGACTCAGCTGCCCTCGTTTAGAGGTACCGGGAGGCGGTGGGTACATCAAACTGGGCGGCCTGGGGGGGGAGTCCTTTGAGTCAAGGGAGTCATGTGAGGTGACCGCCTTCAGCCGAGTGACCTCAGAGGAGGGTCTGGCTAAGAGTCAGAGGGAAGGAGGAGTAGCCAATGACCAGGAGGAGAGCAGCCCCGGGGAACGGCAGGACAGGTGCTCAAGGCGATACTCCAACAAAGAGAAACTTCTCATGATCTCTCAGTCAGACTCCGTTTTGGACGATGAGGAAGTGGATAGCACAGAGATATGATTGGACAATTACTGATTGGTGGATTGAGTTTATTTGGAAAAAAAATGGGCACATGATATCTCGCAGTTGGTTGAAGACACTTGACAACAGTTTCATGGAATTATGACAACGACAATACTGCATAGGATCTGAGATCTAGAGGATCTTGTGGTTCGTTGCAAATGCAATTATCGATATGTGACCAAAAACTGGACATGGTCTTTGGAGGCTATGAAAACAGAAGactgtgtgtatatagtattttGTCAAGGGTTTGTTTGTGTAGGTTGGAAGCATCGCACCCAACTGAAAGAGTTTCAAAGCAAAAAGATAACATTAACCAAAAAAGGGCCCGTTTTAAAATGGTGATTGAACCGTTAGTTACTGTACCATCCACTTGATGTAATAGTTTCTCTAATTTGTAGAAATatagtgtgtgtctgttccaCCTACTGTCACAACTGATACTGTAGTAGTATATTGATTGAGAGTTGCTGTCTCAACAGCATGTATTTTGTACTTTAATGTCCTTGCCGTTTTTATCAGTTTGAATTCAAACTTTAATAGCAATACATCATTGACCATCTCTGTTTGCTTGTGGGGGAAACAATGTTGGCATATTTGCCTGTGTGTCTTTTAAATTCTCTGAGTAAGGCTTGTTGGTTATTGTTTAGAACTGTCTTGCTTGTTAAGGAATCTCCTGTGTATCTTTGCTATCGCTTTTGCCTGAGCGAAATTAAAAACAACACTCTAACTAGCACAATTCACAGCTGAACACTTGTATCTCTGTACAAGTAGCCTAAGTACCTTAGCACAAGTAACCATCTGTGGAAAAAAATACTTATCAAATCAATGTTATCCTGTGCAAAAGCAGCTGGATTGTTTTTGTAGTTGGTTCTTGTTCAATAACACACCTGCAGTAAATAATTGTATTCCAATTGTTCCTGGTGCCCATGGTCAATTCAACCATCCCATGGTCGTCCTATGGCTCAATCAGTCTTCAAATAAACTTATGAAGCTG

Function

NR:

description
transmembrane protein 200C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562599.2 True 3305 mRNA 0.49 2 19559053 19569524

Neighbor

gene id symbol gene type direction distance location
LOC110489742 LOC106590345 coding upstream 12482 19402767 ~ 19546571 (+)
lama1 LOC106590346 coding upstream 236922 19254640 ~ 19322131 (+)
LOC118938968 NA coding upstream 266281 19292630 ~ 19292772 (+)
LOC110489737 LOC106590377 coding upstream 692947 18859697 ~ 18866106 (+)
LOC110489736 LOC106590352 coding upstream 703732 18850631 ~ 18855321 (+)
epb41l3a LOC106590342 coding downstream 28760 19598284 ~ 19680110 (+)
zbtb14 LOC106590341 coding downstream 115373 19684897 ~ 19692622 (+)
LOC110490938 NA coding downstream 125647 19695171 ~ 19701742 (+)
LOC110489746 LOC106590339 coding downstream 139345 19708869 ~ 19714844 (+)
LOC110489748 LOC106590337 coding downstream 157056 19726580 ~ 19750106 (+)
G1266041 NA non-coding upstream 65397 19492797 ~ 19493656 (+)
G1265889 NA non-coding upstream 262641 19295932 ~ 19296412 (+)
G1265750 NA non-coding upstream 423047 19048104 ~ 19136006 (+)
G1265790 NA non-coding upstream 446392 19111565 ~ 19112661 (+)
G1265685 LOC106590348 non-coding upstream 600991 18944085 ~ 18958062 (+)
G1266153 NA non-coding downstream 185652 19755176 ~ 19755845 (+)
G1266151 NA non-coding downstream 190614 19760138 ~ 19762431 (+)
G1266156 NA non-coding downstream 197783 19767307 ~ 19768614 (+)
G1266159 NA non-coding downstream 204631 19774155 ~ 19774960 (+)
G1266161 NA non-coding downstream 207947 19777471 ~ 19777680 (+)
mcmdc2 mcmdc2 other upstream 3664889 15885437 ~ 15895996 (+)
G1261980 NA other upstream 3822636 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 3852514 15696896 ~ 15706601 (+)
LOC110489660 pan3 other upstream 4364108 15166247 ~ 15194945 (+)
G1267949 pck2 other downstream 1270771 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 2216697 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 3563335 23132828 ~ 23146739 (+)
G1270643 NA other downstream 3807784 23377308 ~ 23377560 (+)

Expression


Co-expression Network