LOC110490938


Basic Information

Item Value
gene id LOC110490938
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19695171 ~ 19701742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110490938
ATATATTCTTAGGGAGAGTAATAACATTGCAACCCTTGTGGAAACCTTCGTTTTTTCCCTCGATCAGGTCTGAAGGGAAAAATATATAGAATAATGAATGGAGGGGTGCGGCTTCTGTGTACTGGATGGCCACAAGGAGAAGATTGGTAACTTCCGGGTGGAGCCCACAGGGAGAAGATTGCTTTTCCGCGGGAGGGGAGAACATCCCAAGATGGACAAGCTGAAAGTGAGCATCTAGCCGGAGGACTTCACCATCAACTGCAGCAAGTGAGCAGCGCTAAGATACCAGTGGCCCCTATGGATGACAATGAAGGTGCAGCATGACGACACAGTGACCTGGCTGGCCTCCTGGGTGGAGAACGTCCAGGGAAAATTCAAGTACATCGTGTTCAAACCCAGCTCCAGACTTAAGGGAGGGAAGGACTGGCAGAAGTACGAGGTGGCTTGTAAACGCAAGCCGAAGGTGACAACCATCAGGAGGCTGTGCCGAGGACTGGAAGCACCGGGAgatgaagaccagacagagagGAGTGGCACTCTACTTTATAGTCAAGCTGGCCCTGCGAGTGGGGAATGAGAAGGAGGAGAATGAGATGGCCAACGCCGTGCGCTGCTGCTCTCTGAGAGTGGGACACATCACCCTGCACCAGCAGGATTGAGGCCAGGAGTTCATGGTGGAGTTGGACTTCCTGGGCGAAGACTTCATCTGCTACTATGATCCATCTAATGTTCACAGACATATTATTTGTACACATGATTTCAAGAACCTGAAGCTGTTCACGGAAAACAAGGAGTCTGACGATGACGTGTTTGATAGAATAAACATAACAGATATGCCAAGAACCTTCAATGCCTCCACCACACTACAAGAGTGGCTCAACAAGCTCACCACTGCTGATATGAGTCTGCTGTGCTATAACCGGGCCAACAGAGCTGTGGCCATTCTCTGtaaccaccagagggcagcaCCCAATACCTTTGAGAAATCCATGCAAAACATGCAGGGCAAGATTGCACGGAAGCAGCAGCAATTGGATGTGACCAAGAAGGAGCTTAAAGAGGCATACAATGAACACAAGAAGGAAGTAACTGATAGGACTTGAAAgCTGGTTGAGAATGAGGCTGTGGTGAAGAGGCTGGAGGAACAGCTGAAGAAGCTCTAGCTACAGATGACTGACGGGGAAATTCAATGCCAATCGACAAGATCTACAACAAAACGCAAGGAGGCAAGATTTTCAGTTCGGAACTGTGACAACTCATTGATTTTGTAttatcgtaaaaaaaaaaaatatatgtggcATTTTCTAATGTTCACTATTTTATTTGCAACTCCATATTTCCTTATTTGTTATTGGTTACCAGCAGTGTTCGTTTTCTGACTGTGAGATTTGAGCAGCAATAGTAGACAAGGTACATTTTGTGATTTAATAAGATTTGTTTCCTTTGTCAACaaaaatatatgtgtgaaatgaaATACCTTTTCATTGATGTGTTTCATTTTTGTTGCTGCCTTTCTCCAGAGCGAATTCCTACAGCCCTTCAAAGTATaaagaaaaatctatatatacaATCATATTAATATACCAACATAAATATAAAAGATGCAGGAATGTACCAGATTTGATATTGTTTTATGCAGTTTGAAGCTGTGAGATGTTGGGCTGTGTTAGCATGGCATGTTGAATTCTCCAATCCTCTCAGAATGTAATCCTCAAAACCTGCCTCTGGTCATACTGGCTGGATTGCAGTCCCTCGTGTTTTACCAGCCTTTTTAGCATAGGTAAATGTCACCGGGCTAAAGAACATGCGTGGACTTCCAAAGTCCGCCTGTAGTGTACGATAACATATTTTTTCTGTTGTGCGCATGGAGACGTAATGTACACTGTCTCGGGAGATGTTTTAGAACTGGAAGCAAATGTAGTACAACAATTGTTTTGTGTTCATCATCAGGTCTTTACATGTGGAGACGTTTTTGTACCTTTTTTTGTGAAGCATACAAACCATAGTGTTTTTACATCAGTGAATAGTGCTGATGTGACTGTTATTTCCCTTTTCATATGGATGAGCTGCTATAGCCCCAAGTGACGCCAGACTCATGTGGTTTCCCACAGGACTGTGGTCAGTAGACTGCAACGCGCCACATCAAAACTCTGTGTGCAGCTCCtctgaaaaagagagacagaaaatgtGGGACAAATTCCTCTAGACTGCACCGTGTCTGCTGCCTGACTGCCTACCGCCCTGCACAAGTGGAACGTGAGCAACTTCTATCATTGAGCAACTTCTGTGATGTCTCTGAACGCAATCTCCTCACTCAACCTTTGTTGCTGCAACAGAGTTTACGTTTCTTTAACCACCATGCCAaacatagatggtaaactattCAGTGTAGTACACATGCTGCAGGCCAGGGCCACCAATGAATCAGACAACACTCTTTTTATTTAACATTGCTGCAGTGCGTTGTGTGGCCTAATACgttgaaaatgtgaaaaataaaTCTTCTCAGCTCTTCACCTGGAGGGCCCTTGCAGTCTACACTTTTCCTCTACCTTTCAATAGCAATCTTGAGATCTGGCCGTAGCCTATTGGGCTCTGTCTCAGTACTAAGCTTTTGATCCCTGCTTTGTGTTGCTGCAGTCTGATTCGATTCGCCGGTGTTCTTCACTAATCTAATCCAGACGGAGGGAGTTCTTTGGGACATGGATTTGGGATTTCCCTCTCGGTTTGTTTAGGGATTAGCAGCCGAAGGTACACAGTGGTAATGAGTTTAAACACAAAATGGGGAAAATATGCCAACGTAAGATAATAGGCATTCACAGAACCCAGTATGCTTCTAAGGCCATGGTTTTAAAGAGCTTGTGAACTTTGAAACTAGAACCTGGGAGAAATTGTAGGATTATATGTAGCCAAGGCCTGGGATTTCTATCCTAGAGATATTGTAAAATTTGTGAAATCAAATTGATGGTGGTGTTTTTACAAGAAACTTTGTTGCTCAGTGTTTGAACAATTTTTCTCtgcgagggagagagacaaatcaTATTCTGACCCGGATTGGTGATTTCATCACTGAGGAGCTTTCATTCGCTGTTGGTGTTGTGAACTTCACAAGCACCGGAGGAAACAGGAAGCCCAGTCAGAATTCTCATTGTTCCAGGCCAGCGTTTGAAGTTTGGGCTTGCAGGAAGACATTGTAGAATAACCACCAGTGGACTTGACCTGCCATACTCTTGTTAATGGCAGTTTGCCATCTATGGATGTGGATGGGTTGGTTCAAACTGCTACTGAGATGCTTGTTACTGATCTGCCATTGCTTTGACTCCTTTTTCTCCTTTTCTGGGCTACATTTTTTTATTAGAGTTACTAATGACTCAATCACAGCCTACTTTATATGGCAGTTTACCATCTATGGATGTGGAAGGGTTGTTTCCTCACAACTGCTACTGAGACTTTTATTACTAATCCAACATTGATCATCTGtggtttctcttttttttctttttctgggATACATTTCTTAAATTAGGGTTATTATTAATGACTGATTATAATTGCTTTGCACAGTGGGGGGAGATGCTCCAATTGGACTCGACACAGATTTCTTTGCACGTGTGGAACATTTTTCAGAACCCCAGAGCCAGAACAACATTCCTTATTCCCTTATACCTGGGTGTGTTTGTCTTCTCTTGTTGGTCGTCAATGCACCACATGTCCACCACATTGAGATGTTCAAGCAACAACCCCAGCCAACATGTCCAGGTGGGCCCCACCTGGGTTTTAAATTAGTTTCAACTGGGCAAGGGCTCTAATTGGTTATCTTAGTAGGTACCCAATTGGGTTAACATTGAGGCTAATATGGATGCTGAGGATAACTTTGTGGGTCACTGTTGGGTTTCCCTCATGTGATCCATGGAACAGCCCTTCATTGACCCATATGAGCCCCACATGGAAATGTTCCCTGGGAACACACTGCctattttttcttcttcaaatgTTTAGAGACACTTATCATTTCAAACTGTTTGCTTGAGGATGAAACATCAACTTTTTCTGGTTTTGTCTGACCAGACAACAGAGACAACCTGTCTAAAAAATAATACTTGAGGCTTGTGGATATTTTTCTCTAAAGCATTCCCAGTTCTCACATAAATACGTTATTGTCTTATTTGTTGCGAATAAATTATTTCTACTCTAGGTCATAGAAGCTACAATACAATGCATAATACAGCCCACTGGGCTCACACCGTCATTTCAATGTGGAAATTTGGGTTATAATCGGTTGAGACGTTGCTCAATGAGATTTCAACCATTATTCACCCACTCAGAAAGACAGccagaagtttgttgaattcccaatgtgtaATCACTAtcctttcaaccatctaaaagcacaacaaagttcaaatgggaatacaatgtcagatattttgtatttatacaatgagttaatgtgttatcactgtttCATCTAATtgcacaaccaaatgacctggattgcagttaaGATTCCATTAAAAGTACATAGTGCAAGTGATTAATGCTGTTcaagattctgcacagattattatagcaattgtgaagatctccacagacctggaACCTTTgtatgctatcttgaacatgcacaaTTTCTATGATTAGGCTACGTAAGAATAtttttatagttacagtaacctgtggccatggatgtgttactcattttaaggttgaataaatactgttatgTTAGTTTTTAAGATAGCTTCAACTTTAGGCTATTTACAATGTTACAAAAgtcatattgaattgtgttttgtTCACAATgtaaccaaatatcaacatttaaagcaGTTGTATCTAATGCTTGGATAGTTAAATCTGTGCCACTAGcttaatcctattctttaacttttggtttagttggagacgtgaatccaacatata

Function

NR:

description
PREDICTED: DNA topoisomerase I, mitochondrial-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110490938 True 4923 mRNA 0.42 11 19695171 19701742

Neighbor

gene id symbol gene type direction distance location
zbtb14 LOC106590341 coding upstream 2549 19684897 ~ 19692622 (+)
epb41l3a LOC106590342 coding upstream 15061 19598284 ~ 19680110 (+)
LOC110489743 LOC106590344 coding upstream 125647 19559053 ~ 19569524 (+)
LOC110489742 LOC106590345 coding upstream 148600 19402767 ~ 19546571 (+)
lama1 LOC106590346 coding upstream 373040 19254640 ~ 19322131 (+)
LOC110489746 LOC106590339 coding downstream 7127 19708869 ~ 19714844 (+)
LOC110489748 LOC106590337 coding downstream 24838 19726580 ~ 19750106 (+)
LOC110489750 LOC106590336 coding downstream 67211 19768953 ~ 19773398 (+)
LOC110490828 LOC101268971 coding downstream 350887 20052629 ~ 20055980 (+)
gcm2 LOC106590332 coding downstream 387034 20088776 ~ 20093865 (+)
G1266041 NA non-coding upstream 201515 19492797 ~ 19493656 (+)
G1265889 NA non-coding upstream 398759 19295932 ~ 19296412 (+)
G1265750 NA non-coding upstream 559165 19048104 ~ 19136006 (+)
G1265790 NA non-coding upstream 582510 19111565 ~ 19112661 (+)
G1265685 LOC106590348 non-coding upstream 737109 18944085 ~ 18958062 (+)
G1266153 NA non-coding downstream 53434 19755176 ~ 19755845 (+)
G1266151 NA non-coding downstream 58396 19760138 ~ 19762431 (+)
G1266156 NA non-coding downstream 65565 19767307 ~ 19768614 (+)
G1266159 NA non-coding downstream 72413 19774155 ~ 19774960 (+)
G1266161 NA non-coding downstream 75729 19777471 ~ 19777680 (+)
LOC110489737 LOC106590377 other upstream 832660 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 3801007 15885437 ~ 15895996 (+)
G1261980 NA other upstream 3958754 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 3988632 15696896 ~ 15706601 (+)
G1267949 pck2 other downstream 1138553 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 2084479 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 3431117 23132828 ~ 23146739 (+)
G1270643 NA other downstream 3675566 23377308 ~ 23377560 (+)
G1270652 NA other downstream 3704918 23406660 ~ 23408002 (+)

Expression


Co-expression Network