LOC110489746 (LOC106590339)


Basic Information

Item Value
gene id LOC110489746
gene name LOC106590339
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19708869 ~ 19714844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562611.2
TTTTTTGCTTGCGGGAGTTTACTTTGCTCACGTTCACTTTAGGATTTGACTCATCGGTTTGTTGGGGGGCACTGAGTCAAAGCATGATAGTGCCCTCCTACGAAAATATTACTCGTGTGTGTGTTCTTCAACTATGccacagaggacagagaggagtgcGCCTGTCCATTTAAAATACAAAAATCGGATAGAGGAAACATAACAAAATGAATAACATTTATCTAAGAGCAACATTGAAGAACTGCTGAATTGGTAGCCTAAATTGTTGAAAGGAACTCGTTTTATTTCGTATCGGCGCAGCAAGCCACGTTTCTTAGAATGATTGACAACGGAATTTTCAATGATCTATTTGATTATTCTGGAATGAACGGTTGGTGACGAACGGCTCAAATGGGAAGGAAGACAATTCATTAACGATGAACAATACTTTATCATGGAAATTGGAGTGATTCTTACCTAATTAAAATCTTTTTTAAAGTGTCGTCTCAGTCAAGACTAACAATGTTACTGATCAAATTGATTATCTCTACTGCTTTTCTTTTCAATGGTGGTTGTGAGGGCTCTCTGCTTCACTCTGACATAAGAGCCAGTGTCAGGTCCTTGGGGAGGAAACATGGGCAGCAGCATGATCGGCATGCCGTTATTGTTGCCTCCCAATGTCACTACATGCTCAAGCACCTCCATGGAGGACAGATCTCAGTGCATATGCCACCCAACATCGCAGGCCACTGGGTATCCACCAGCTGTGAGGTCAGACCTGGGCCAGAGTTCATCACCAGATCCTATCTCttccaccacaaccacaccttCCAGGTCCTCCTGTTCCACTATAGGGACAACCGCTGCTCCTCTCCCACCTACACCATTCTCGCCCGGGGCCAGCTGCACCTGCGCCAGGCCTCATGGGTGGTCCGCGGAGGCACCGAGGCCAACTACCAGCTCCACAGCGTCCAGGTTGTGTTCCACAGCCCTGAGGTAGCCAGGAACCTCAGCCAGTGGCTCAAGCCCAGCTGCGGAGCTTCATCCCTGGTTGGAGGGGAGTCGTGGGAGCCCTGGGAGCCCCATATCAGCTATGACCTGTGGGGCGAGGAGAAGGAGCGGGGGAGGGATTGTGCCCGCAGGCTGGGTTTCACTATGAATGAGCTGCAGCTGGTGCGTGTGGAGCAGCGACGCCATCATGGCGCCCAGGTCCCTGATGACCACACTGAAGAGCTTTTCCTGGGGGATGTCCACACTGAGCGAGCCCAGAGGACCCACCACAAACCCTCCAGCTACCAGCCGCCCCTGCAGCACACCAAGAGCCATGAGCGTACCTGCCTTATCTGCAGAGTCATGGCCAGGGCGGACCAGCATCATCCTCCCATCCTGCCCTGCGAAGAAAACCTATCCGTCAAACTACAGGGCCAATGGGTAAGCCAGCGGTGTGAGGTCCGCCCTGGGGTCCTCTTCCTCACCCGCCATTTTGTTTTCCACAACCACAACCGCACTTGGGAGGGCCACTACTGGCATTATTCTGACCCAGTGTGCAGACACCCCACATTCAGCCTGTACGCACGGGGTCACTACAGCCACGCAGTCCTTTCCACCAGGGTCCTGGGAGGGACAGAGTTTGTCTTCACAGTGGACCACATGAGGGTGACCCCCATGGACCAGGCCACCACCTCCCTGCTCAATATCTTCCGGGGTAATGAGTGCGGGGCCGAGGGCTCATGGCGCCAGGGATTGGAGCAGGACGTCAcccccacccatggctgtgccgcCCTGGGCATCCGGCTTCCGCACACCGAGTACGAACTCTTCCGCATGGATCGAGACTCGGCGGACCACCTCCTTCTCTTCAACGGCCAGAGGCCCACGGATGGCTCCAGCCCTAACCAGCCCCATAAGACGGCCACCTCCTACCAGGCTCCCCTAGTGCAGTGTACAGGGGCCGACCAGGGGCCAACGGATTGGGGGAGGGAAGCCGACCAGCTCCATAGGCTGGGGAGTAGCTGCTGCAAACAGGGAGAAAGAGGTGGCATGCTGGATGTGGTCAAAGTACTGCTTATTGCAGCTATACCCGTTCTGTATCTCAGCTAGGGTTAGCAGTGGCTGAATGTTGTGGAGCAGCACTGACTGTGCATTGGACTTTTAGATTCTTAATACAGTGTATGTAATTAATGTTGAGTTGCTACATTCTCATTGTGTCGTGTTCAGTAGGCATGAAACACTATGACAGGTGAAACGATGATCTACTGTACTAAAAATGCTTGTTTTCGTACGGTGTGCGCTAATGAACACGGCCCAACACAAGTTGTCTATGGCCGTGATTCAATCCAATCACGCTTTGTCGACAATGCCATTTAAAAGTAATTTCGATTGAGCCGACATGGGACATCCTAATAACACGCCACTTCGATACAAGTGACTTTTCaggtttctcgctctctctccttgccATATTACTGGTTTCTTCCTTTCTCTGTGTAGGTAGTCATGATGGTTGTCAATATTCAAGCTTGTGGATTTGAAACTAAacttaattctcctaacctactacaAAAAAAGTTGGTGGCGTGTTTTTAAGGAATGtcgagccgacatatgcagcacTTACCGTGAACATTGCCTTTACAAGCCCCATGGGGTTGAACCTCAGCCTATGCATCATGCTCCATGCAGCTCTCTCCAATGACATTCACATGGCGTTTGCAATTGGAGTTAAAAGGAATGGAGGACACCAAACACAAATGGAATCGAGCCTCACTCTTCCTCAAAGACAAAAGATGCACAAAGATGACAAACTGCcacaaaaataatgttaaacattttatttcaatGTTAAATACCATGGGACAGGACTGCAAGAACAGAGAGATCTTTTCAGTCAATGTTTGCCTCACGAGGGATATATATATAACTTGtgtaaagaaaaagaaaaaatctAGAAAGAAATTTAATAATTATGTGTGTGTCAGTAGGAAACAGGAAATGTCCATGGAAGGAGACACCTATATTCCCAGCATACTGTATTGTTTCACATTCCTCAAGAAAAATTAAGGATTTAAGAATTCAGTGAACATTTAAATGTAAGAGGCCATCCAGCAACATTTAGCAGTCTTTTGCTTGGAAGGCCCCCCCCATCCCATTTTATTAAAATGATTAAAATAACATACAAGACACTGAACATTCCAACTCTTATTAAAACCACAGAAAGAGAACTCATTAGAATTGTTCAACCAAAGTCTTGAACCCAGTACCCCGACTCGCCTGTTATCGATGCTCTAACAAGTGTAAAATTTGAGTTAAGAAAACCTCCCTCTCCTGATGCctcaccccccaaaaaaagaacA

Function

NR:

description
protein APCDD1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562611.2 True 3332 mRNA 0.49 5 19708869 19714844

Neighbor

gene id symbol gene type direction distance location
LOC110490938 NA coding upstream 7127 19695171 ~ 19701742 (+)
zbtb14 LOC106590341 coding upstream 16247 19684897 ~ 19692622 (+)
epb41l3a LOC106590342 coding upstream 28759 19598284 ~ 19680110 (+)
LOC110489743 LOC106590344 coding upstream 139345 19559053 ~ 19569524 (+)
LOC110489742 LOC106590345 coding upstream 162298 19402767 ~ 19546571 (+)
LOC110489748 LOC106590337 coding downstream 11736 19726580 ~ 19750106 (+)
LOC110489750 LOC106590336 coding downstream 54109 19768953 ~ 19773398 (+)
LOC110490828 LOC101268971 coding downstream 337785 20052629 ~ 20055980 (+)
gcm2 LOC106590332 coding downstream 373932 20088776 ~ 20093865 (+)
mak mak coding downstream 417913 20132757 ~ 20146308 (+)
G1266041 NA non-coding upstream 215213 19492797 ~ 19493656 (+)
G1265889 NA non-coding upstream 412457 19295932 ~ 19296412 (+)
G1265750 NA non-coding upstream 572863 19048104 ~ 19136006 (+)
G1265790 NA non-coding upstream 596208 19111565 ~ 19112661 (+)
G1265685 LOC106590348 non-coding upstream 750807 18944085 ~ 18958062 (+)
G1266153 NA non-coding downstream 40332 19755176 ~ 19755845 (+)
G1266151 NA non-coding downstream 45294 19760138 ~ 19762431 (+)
G1266156 NA non-coding downstream 52463 19767307 ~ 19768614 (+)
G1266159 NA non-coding downstream 59311 19774155 ~ 19774960 (+)
G1266161 NA non-coding downstream 62627 19777471 ~ 19777680 (+)
LOC110489737 LOC106590377 other upstream 846358 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 3814705 15885437 ~ 15895996 (+)
G1261980 NA other upstream 3972452 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 4002330 15696896 ~ 15706601 (+)
G1267949 pck2 other downstream 1125451 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 2071377 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 3418015 23132828 ~ 23146739 (+)
G1270643 NA other downstream 3662464 23377308 ~ 23377560 (+)
G1270652 NA other downstream 3691816 23406660 ~ 23408002 (+)

Expression


Co-expression Network