LOC110489747 (LOC106590340)


Basic Information

Item Value
gene id LOC110489747
gene name LOC106590340
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19714308 ~ 19718519 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562612.2
CGTGCATTTTGCCCTGCTGCGCGCTTCCTTAACAACTCAACTGTACTCGTGTTCACGTCTATTGGCTCAGAGTGACTCGTTTCCCATATAGGTGATTTTACACTGACCTGGCTCCTTGGAACGGTTTCAAACAACACAATTCACACGAAATGTCTAAATTGGAGCAGGTCCTTGATCTTGAACCACCGTATGATCTCAAATTTAAAGGTCCCTTCACAGAAGTGGTGACCACAAACCTCAAGCTCAAAAATCCCTCTGACAGAAAAGTATGCTTCAAAGTGAAGACGACTGCACCTCGCCGGTACTGTGTACGGCCCAACAGCGGCATGATTGAGTCGGGAGCCACTGTCACTGTTTCTGTAATGCTCCAGCCCTTTGAATATGACCCCAATGAAAAAAGTAAACACAAATTCATGGTACAGACAATCTTTGCACCATCCACTGCTACAGACATGGACGCAGTGTGGAAAGATGCGAAGCCAGATGATCTGATGGACTCCAAGCTGAGATGTGTGTTCGAACTGCCCTCTGAAAATGATAAAATGAATGATGTCGATGCAACCAAAGCTGCCCCCGTCCTCAACTCCAAAGCAGATGGCACGTCGGGGCCAAGGCCCAGCAGCGCGTCCATGGATGACTCTGAGATGAAGAAATTGATGGCTGAGTGCAAGAGGCTGCAGTACGATGTGGGCAAACTCTCAGACGAGAACAGACAACTCAAGGACGAGGGCCTGAGGATGAGGAAGTCCCTCCGGTCAGACGACATGGTCACCGGCTCGGGCGCCATGATGAGCAAACAGCACTCTTCCAGCTCCCTCCCCTCGCTAATGGTCGTCATAGCAGCTATCTTCATCGGATTCTTCCTAGGGAAGTTCGTCTTGTAGGGGTGGGGAGGGGGTgggcgagagagaaggaaagtggGCCGGCATAGGCTCTCATTTGTCTCCCAAGACCCTCAAGGTTAAAGTGTGTGTTATCGTTGACCTGCCATTATCAGTGATAGTGTCAGCTCACTGCGTACGTACATATGTTCTGTGTACCCGAATCATAAACTGGCCTCGCCTTTTACAATCTCACACGGTTAGTACACATGTGGGGAAAAACAGAGAGGAATGAGCTTTCTCTGGGGTTTTCTTGGGGGGTTCTGTTCAGATGTTCTgttctttttttggggggtgagGCATCAGGAGAGGGAGGTTTTCTTAACTCAAATTTTACACTTGTTAGAGCATCGATAACAGGCGAGTCGGGGTACTGGGTTCAAGACTTTGGTTGAACAATTCTAATGAGTTCTCTTTCTGTGGTTTTAATAAGAGTTGGAATGTTCAGTGTCTTGTATGTTATTTTAATCATTTTAATAAAATGGGATGGGGGGGGCCTTCCAAGCAAAAGACTGCTAAATGTTGCTGGATGGCCTCTTACATTTAAATGTTCACTGAATTCTTAAATCCTTAATTTTTCTTGAGGAATGTGAAACAATACAGTATGCTGGGAATATAGGTGTCTCCTTCCATGGACATTTCCTGTTTCCTACTGACACACACATAATTATTAAATTTCTTTCTagattttttctttttctttacaCAAGTTATATATATATCCCTCGTGAGGCAAACATTGACTGAAAAGATCTCTCTGTTCTTGCAGTCCTGTCCCATGGTATTTAACattgaaataaaatgtttaacatta

Function

NR:

description
vesicle-associated membrane protein-associated protein A-like

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06096 VAPA; vesicle-associated membrane protein-associated protein A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562612.2 True 1695 mRNA 0.45 6 19714308 19718519

Neighbor

gene id symbol gene type direction distance location
LOC110489741 LOC106590347 coding downstream 341903 19322025 ~ 19372405 (-)
LOC110490936 lrrc30 coding downstream 476632 19236100 ~ 19237676 (-)
LOC110490935 LOC106579657 coding downstream 493403 18918785 ~ 19220905 (-)
LOC110489739 LOC106590380 coding downstream 797452 18882806 ~ 18916856 (-)
crygn2 LOC106590379 coding downstream 840084 18871226 ~ 18874224 (-)
LOC110489749 tws1a coding upstream 42107 19759819 ~ 19768382 (-)
LOC110490939 LOC106590335 coding upstream 54932 19773451 ~ 19933165 (-)
impa2 impa2 coding upstream 226488 19945007 ~ 19950792 (-)
gnal LOC106590334 coding upstream 245920 19964439 ~ 20031093 (-)
sycp2l sycp2l coding upstream 344573 20063092 ~ 20087189 (-)
G1266897 LOC106590339 non-coding downstream 1283 19712710 ~ 19713025 (-)
G1266910 LOC106590339 non-coding downstream 4346 19708962 ~ 19709962 (-)
G1266880 LOC106590342 non-coding downstream 51727 19659874 ~ 19662581 (-)
G1266819 NA non-coding downstream 121130 19592891 ~ 19593178 (-)
G1266686 NA non-coding downstream 286568 19410848 ~ 19427740 (-)
G1266943 NA non-coding upstream 66524 19785043 ~ 19785261 (-)
G1266949 NA non-coding upstream 75398 19793917 ~ 19802097 (-)
G1266958 NA non-coding upstream 90213 19808732 ~ 19809123 (-)
G1266961 NA non-coding upstream 96855 19815374 ~ 19815682 (-)
G1266708 LOC106590345 other downstream 260538 19435018 ~ 19453770 (-)
G1266471 NA other downstream 604951 19108559 ~ 19109357 (-)
G1265456 LOC106590371 other downstream 1134145 18576539 ~ 18580163 (-)
G1265249 NA other downstream 1530185 18183791 ~ 18184123 (-)
G1264199 LOC106590429 other downstream 2251331 17461828 ~ 17462977 (-)
G1267414 NA other upstream 549447 20267966 ~ 20268488 (-)
G1267452 NA other upstream 571831 20290350 ~ 20290673 (-)
G1268555 LOC106590243 other upstream 1239853 20958372 ~ 20960089 (-)
G1269265 NA other upstream 2084168 21802687 ~ 21803352 (-)
G1271421 NA other upstream 3994836 23713355 ~ 23728939 (-)

Expression


Co-expression Network