LOC110489749 (tws1a)


Basic Information

Item Value
gene id LOC110489749
gene name tws1a
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19759819 ~ 19768382 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562619.2
ATGGCCTATCACATGATACCAATTGACAGTGGTCTTGGCTCGGGTTCACCTGAGCAGGGCTCCTGTGTCTGAAATGGTAACTGTATCTTTAAGGCGCTTGCCTACCCCTGTCTGCTTTGTGTAGAGAGTGTGGAGAGTCACGCCATCAGAACATGCTTTAATTCTGAAAGGTAGAGGTGGAAAAGGGGTTAAGAAACGTTCACCTCTGGAGCAACAATCGACAAGTTGGGCAAGGATATCGTTGTTTCGTGCGTGTCGGAAATGAAGTCCACTCAATTTTTACTATCCACTGCACTTCTTTTCCTTCTATCTGGACTTTCCATGATTACCGCCTGCAACAAGGCTCTCTGTGCCAGTGATGTCAGCAAGTGCCTCATTCAGGAGCTGTGTCAGTGCAGGCCCTCTGATGGGAACTGCTCATGCTGTAAGGAGTGTATGCTCTGTCTGGGTACACTGTGGGAGGAGTGCTGCGACTGTGTGGGGATGTGTAACCCCAGGAACTACAGCGATACTCCGGCTACCTCCAAGAGCACGGTGGAGGAACTCTACCGACCCATCCCCTCACTGTTCCGTGCCCTCACCGAGGGCGAAGCACCTATCAACATGATGGTGGTATCCTTCCCTGTGGCTGAGGAACTATCTTACCATGAGAACCTGGTGTCTTTCCTGGAAACTCTGGAGGACCAGCACCAAAATGTCTCCCTGACCGGGAACAGTATCCACACCAGCTACGATAACACCCAAAGtactgaagATAACATGTGCACTGTGGTGTACTTTGACGACTGCGTGTCCATCCGCCAGTGCAAGCAATACTGTGAGTCCATGGGGGGCTCCAAATACCGCTGGTTCCACAATGCCTGCTGTGAGTGTATCGGCCCAGAGTGCCTCGACTACGGCAGCAAAACTGTCAAGTGTATGAACTGCCTGTTCTGATTGAAGCTAATAGGACTGGCGACATTAGGGGACTATCTGGAGTAGCAGGTGAAGGTTAACTGAGGAATATGACTTTCATAATGCTTCACTATTTTTATGTATTATGAATTATTTTTGCTCATTTTTATATTTTATAGGTTCTTTAGCAAATTAGAAATATATCGTTTTGAATTTTTTTCTAGTTAAGAGGAGAGGTCAATGTTTTAAAATGTGTAATGCAATGGCATTTTATTTTTGGTGTCATGGAAAATCAGAGTAAATGCTATTTGTATAATTGTTTGATCACGTGTTATTTTAGGAAACAACGTCCATATTCAATCAAACTAATAGCCAGCCGTTCACATGTTTGATTTTATATGTGCAGTTTAAATGATTTGTTTCATActgtaaacattattttaaatcGAATAATTGAAAATGAGTTCGGCCAGACATATAGGACATGTTTGGTACAGATGGGTTAAGTTCAGCTGGCCAGACAGATGGGACATGTTTGGTACAGATGGGTTAAGTTCAGCTGGCCAGACAGATGGGACATGTTTGGTACAGATGGGTTAAGTTCAGCTGGCCAGACAGATGGGACATGTTTGGTACAGATGGGTTAAGTTCAGCTGGCCAGACAGATGGGACATGTTTGGCTGACCAGATAGGATAAGCACGGTTTGTACGGTGATGGAATTTTGTGTTTTCCAGGCCTGGAAAAGTTAGGACAAGTTTGGCCAGATATGATAATTTCAGAAATAAGTTTGGCCGGCTAGATAGTTTAATCTGGCCAAATTTATCCTAATTCAGCTGGCTGGCCCGATAGGACAAGTCATCAAGACAGATGGGATATATGTTCAGCTGGCTGGCCCGATAGGACAAGTCATCAAGACAGATGGGATATATAACAAGTTCGGACAATTGGCCAGATGGGTTAAGGTCAGCTCGCTGGACAGATGAGACGAGTGCAGCCAGATAAGTTTGGTAGGCCGGTCAGACAGATAAGTTCACAACCGGGGACCAGCATGTGGGGGTGTTGGGGGTATCCGAGCTTCATCAGCCAACACTAGATATTGGTTAATCAAATCTTCCCATTCTGGCTTAATTTGGCATGCCTTCTTAAACAGCCAAACTGTATACGCATTCACACATCAAGTTTTCTCTTGAGTTGGGCTCAGGGATGGAACAACTGTTGAACATTTGAGTTGGGTGTGGGGGTAGGTCGAACTATgggtggaaagggagagaggggcatgCATCCCACATCAGTTGACCAAAATGTAGAATTCCTACTACCGGCCATTATGGGTAGCAATCATTAGAAGTGCTTATTATTATGCATATTATTTGTCAATTGTGGGAATAAATTAGGATATGCATGTTTTTTGAAATATGCAGTACAACTGAGGGGAAGGGGTTCGAAATGATGTTCGCTGCGGATCtggttctgtactgtaggtggCACCATGTGCTCTTTTTAAAGGATGAGCCCATATCTCTTGAAAGGCCCTAGGATCCATGTGTAAAGGGTTGGTCAGACATTCACTGGAATGACAACCCTACAtgggatgggggtggaatattgAAGGACAATTAGAGGTTTCCTTAGTCGCAGCTACGATATGCTTAACAGTGCAAATATTATGGTA
>TU1447480
taaacattattttaaatcGAATAATTGAAAATGAGTTCGGCCAGACATATAGGACATGTTTGGTACAGATGGGTTAAGTTCAGCTGGCCAGACAGATGGGACGGGACATGTTTGGTACAGATGGGTTAAGTTCAGCTGGCCAGACAGATGGGACATGTTTGGCTGACCAGATAGGATAAGCACGGTTTGTACGGTGATGGAATTTTGTGTTTTCCAGGCCTGGAAAAGTTAGGACAAGTTTGGCCAGATATGATAATTTCAGAAATAAGTTTGGCCGGCTAGATAGTTTAATCTGGCCAAATTTATCCTAATTCAGCTGGCTGGCCCGATAGGACAAGTCATCAAGACAGATGGGATATATGTTCAGCTGGCTGGCCCGATAGGACAAGTCATCAAGACAGATGGGATATATAACAAGTTCGGACAATTGGCCAGATGGGTTAAGGTCAGCTCGCTGGACAGATGAGACGAGTGCAGCCAGATAAGTTTGGTAGGCCGGTCAGACAGATAAGTTCACAACCGGGGACCAGCATGTGGGGGTGTTGGGGGTATCCGAGCTTCATCAGCCAACACTAGATATTGGTTAATCAAATCTTCCCATTCTGGCTTAATTTGGCATGCCTTCTTAAACAGCCAAACTGTATACGCATTCACACATCAAGTTTTCTCTTGAGTTGGGCTCAGGGATGGAACAACTGTTGAACATTTGAGTTGGGTGTGGGGGTAGGTCGAACTATgggtggaaagggagagaggggcatgCATCCCACATCAGTTGACCAAAATGTAGAATTCCTACTACCGGCCATTATGGGTAGCAATCATTAGAAGTGCTTATTATTATGCATATTATTTGTCAATTGTGGGAATAAATTAGGATATGCATGTTTTTTGAAATATGCAGTACAACTGAGGGGAAGGGGTTCGAAATGATGTTCGCTGCGGATCtggttctgtactgtaggtggCACCATGTGCTCTTTTTAAAGGATGAGCCCATATCTCTTGAAAGGCCCTAGGATCCATGTGTAAAGGGTTGGTCAGACATTCACTGGAATGACAACCCTACAtgggatgggggtggaatattgAAGGACAATTAGAGGTTTCCTTAGTCGCAGCTACGATATGCTTAACAGTGCAAATATTATGGTACAGTTTATATGGACACTCAATTACCATGGTACTTCTTAATGGTAAGTTTACAAAcatggtaagtggtgaaataagtatagctagTTAAAATTGTATGTAATGGTGTTGCAGATAGTAACAAGACGATCCGTCTTTATCTGGCTAAAAGAAggaaggaatataatatctattcTTTGCAGGAAACTCATTCTACACTTTTAGACAAAGTTGTATGGACAAAATGACTGGGGGACCTAAAACAGATTTGTCTCATTAACCATATAtggtccaaataatgatgttgCTATATAACTTGACTTTACAGGCAATACATGACGCAATTATTATTGTGGGAGATTATAATACGGttttaagtacctcaatggaccgtaaaggaaatcacactacaaactatcaccctcatgctCTTAAAGAAATTACGAATATTATGCATATATCtgaactagtggatatatggcGGCTTacatatcctgacctagtgagagaaaCATGGCGAAGGatcaatcaagctagtcgtcttgataACTTTTGGTGCCAGCGACAATGACATAAAGTAAAGTGTTGATAAGGGACAGAATGCTGTCAGGCCATAAAATAATTGGTATACACATTACACTTACAGAATTTACACGAGGGCGAGAATATTGGAACTTTAAATAAAAACCTACTGGACGACAAATTATTTTTAACCAAGAGAATAATTTACAACTTTTCCCCTATATAGCATAGATACAGTGGATCCTCTTATTGTATGGGGCACTTTttgactgaacaaaaatatatcccatgtttcatgatctgaaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562619.2 False 2567 mRNA 0.45 5 19760626 19768382
TU1447480 True 1962 lncRNA 0.40 2 19759819 19761869

Neighbor

gene id symbol gene type direction distance location
LOC110489747 LOC106590340 coding downstream 42107 19714308 ~ 19718519 (-)
LOC110489741 LOC106590347 coding downstream 388221 19322025 ~ 19372405 (-)
LOC110490936 lrrc30 coding downstream 522950 19236100 ~ 19237676 (-)
LOC110490935 LOC106579657 coding downstream 539721 18918785 ~ 19220905 (-)
LOC110489739 LOC106590380 coding downstream 843770 18882806 ~ 18916856 (-)
LOC110490939 LOC106590335 coding upstream 5069 19773451 ~ 19933165 (-)
impa2 impa2 coding upstream 176625 19945007 ~ 19950792 (-)
gnal LOC106590334 coding upstream 196057 19964439 ~ 20031093 (-)
sycp2l sycp2l coding upstream 294710 20063092 ~ 20087189 (-)
tmem14ca tm14c coding upstream 377901 20146283 ~ 20148723 (-)
G1266897 LOC106590339 non-coding downstream 47601 19712710 ~ 19713025 (-)
G1266910 LOC106590339 non-coding downstream 50664 19708962 ~ 19709962 (-)
G1266880 LOC106590342 non-coding downstream 98045 19659874 ~ 19662581 (-)
G1266819 NA non-coding downstream 167448 19592891 ~ 19593178 (-)
G1266686 NA non-coding downstream 332886 19410848 ~ 19427740 (-)
G1266943 NA non-coding upstream 16661 19785043 ~ 19785261 (-)
G1266949 NA non-coding upstream 25535 19793917 ~ 19802097 (-)
G1266958 NA non-coding upstream 40350 19808732 ~ 19809123 (-)
G1266961 NA non-coding upstream 46992 19815374 ~ 19815682 (-)
G1266966 NA non-coding upstream 52430 19820812 ~ 19821021 (-)
G1266708 LOC106590345 other downstream 306856 19435018 ~ 19453770 (-)
G1266471 NA other downstream 651269 19108559 ~ 19109357 (-)
G1265456 LOC106590371 other downstream 1180463 18576539 ~ 18580163 (-)
G1265249 NA other downstream 1576503 18183791 ~ 18184123 (-)
G1264199 LOC106590429 other downstream 2297649 17461828 ~ 17462977 (-)
G1267414 NA other upstream 499584 20267966 ~ 20268488 (-)
G1267452 NA other upstream 521968 20290350 ~ 20290673 (-)
G1268555 LOC106590243 other upstream 1189990 20958372 ~ 20960089 (-)
G1269265 NA other upstream 2034305 21802687 ~ 21803352 (-)
G1271421 NA other upstream 3944973 23713355 ~ 23728939 (-)

Expression


Co-expression Network