LOC110489750 (LOC106590336)


Basic Information

Item Value
gene id LOC110489750
gene name LOC106590336
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 19768953 ~ 19773398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944027.1
TATATGAGTAGAAAAATAAAATGCAACTCACGAGCTTCCGTAGTCAACAAACTGATGAAGGAAAGGTCTCCTGAAACCAGTAACGGCAACATCTCACTACATTTTAGCCAGTGAGAACTTAAATATTAATAATTGTTTCATTACATTATTAGTAGACTACACAGCAGAGCTGCCACTGGACCAGATGGCTGCGAAAATCAACGAGGCGCACGACCACATTGCCAAGGCTGAAAAATATTTAAAGactagcttcatgaaatggaagCCTGACTATGACAGTGCTGCATCAGAGTACTCAAAAGCAGCTGTTGCCTTTAAAAATGCCAAGATGCTTGAAGAAGCGAAGGAGGCATACCTGCAAGAGGCAGAGGCACATACCAACAACAAAACACTTTTCCATGCAGCCAAAGCACTTGAGGCAGCTGGTATGATGCTCAAGgACATGCAGAGGATACCAGAGGCTATCCAGTATATTGAGAGAGCAAGCATGATGTATGTAGAGAATGGCACACCAGACACTGCAGCCTTGGCCCTCGACAGAGCTGGAAAGCTAATCGAATCACAGGATCTAGCAAAAGCAGTGGATCTGTACCAGAAAGCTGCATCAGTGTTTGAGAATGAAGACCGTCTACGTCAAGCTGTAGAGATGCTGGGGAAAGCATCAAGACTTCTCGTCAGGCAACACAAGCTTGATGAAGCAGCAGTGTCGATTCAGAAGGAGAAGAACATGTATAAAGAAATAGAGAATTACCCAACGTGTTTTAAGAAAACCATTGCCCAAGTGCTAGTCCACCTTCACAGAAATGACTTCGTAGCAGCAGATAAATGTGTTCGAGAGAGTTATAGTCTGCCAGGCTTCAGTGGGAGTGAGGACTGTATTGCCTTGGAGCAGCTCCTGCAGGGCTACGATGAGCAGGATGAGGACCAAGTGCACTGCGTCTGTAACTCGCCCTTATTCAAGTACATGGACAATGATGTCTTTAAAAGGTATGGAATCATGAGCTGTCCTTTCCTTATGAAACCTTTCTCCTAGCCACCCCATAGATGCATTTCCAGGCTAGCCTGAATAATGCAAAGTAATTTATTAATAGAAACAATAGCAGTCCAACTGCTTGCTTACCTGCGTCACCCATCTAGACCCTGCTTTCTTGTTGTTTTGTAAGATTTATTATATTTTACATTTCTTTAGAGCTATTTCTTAAACCTCTCCTGATCAAttccagaaagacacacacacctgactcaaACTAACCAAGGTTTTTCTGATTAGTTCATTAGTTGAATCTGCTGTGCTAGTTTAGGAAGAGATCAAAAACATGGAACTGGCTTTGGGTACTCAATAAGAGGTTTAGGAAACACTTCTGAGAAACAAATACTGTAGAGACAACTTGCCATAACCTGACCACAGTGCCAATTGTC
>XM_021562621.2
ATATGAGTAGAAAAATAAAATGCAACTCACGAGCTTCCGTAGTCAACAAACTGATGAAGGAAAGGTCTCCTGAAACCAGTAACGGCAACATCTCACTACATTTTAGCCAGTGAGAACTTAAATATTAATAATTGTTTCATTACATTATTAGTAGACTACACAGCAGAGCTGCCACTGGACCAGATGGCTGCGAAAATCAACGAGGCGCACGACCACATTGCCAAGGCTGAAAAATATTTAAAGactagcttcatgaaatggaagCCTGACTATGACAGTGCTGCATCAGAGTACTCAAAAGCAGCTGTTGCCTTTAAAAATGCCAAGATGCTTGAAGAAGCGAAGGAGGCATACCTGCAAGAGGCAGAGGCACATACCAACAACAAAACACTTTTCCATGCAGCCAAAGCACTTGAGGCAGCTGGTATGATGCTCAAGgACATGCAGAGGATACCAGAGGCTATCCAGTATATTGAGAGAGCAAGCATGATGTATGTAGAGAATGGCACACCAGACACTGCAGCCTTGGCCCTCGACAGAGCTGGAAAGCTAATCGAATCACAGGATCTAGCAAAAGCAGTGGATCTGTACCAGAAAGCTGCATCAGTGTTTGAGAATGAAGACCGTCTACGTCAAGCTGTAGAGATGCTGGGGAAAGCATCAAGACTTCTCGTCAGGCAACACAAGCTTGATGAAGCAGCAGTGTCGATTCAGAAGGAGAAGAACATGTATAAAGAAATAGAGAATTACCCAACGTGTTTTAAGAAAACCATTGCCCAAGTGCTAGTCCACCTTCACAGAAATGACTTCGTAGCAGCAGATAAATGTGTTCGAGAGAGTTATAGTCTGCCAGGCTTCAGTGGGAGTGAGGACTGTATTGCCTTGGAGCAGCTCCTGCAGGGCTACGATGAGCAGGATGAGGACCAAGTGCACTGCGTCTGTAACTCGCCCTTATTCAAGTACATGGACAATGATGTCTTTAAAAGTATGCAAAGTTGTCCATCAGCCTGAGGGTTCCAGGGGGGGGTAAGAAGAAGGCTCCTGCTTCAGCTGCCGATGCTGGGGAAGGAGCGGAGGCAGGGGAGGCTGATGAGGATGAGTACGCTGGTGGGCTATGTTAGCCACAGAACCTGGACTTCCTGTCTGGACCAGAGCACTTCCAGTTACCTGTTAAGGATGGGTGTCGGAATCTTCCACACCCTCCCATTCTCAGCATGCCAGGGGGTCGTGAACTTTGCCTTGCCTCCCATCGCCAGATGTACAACTGTAGGCACTCTAACCATCAAGCATAACAACGAGTTATGCTCATAACAATAACATAAGCATGGTAATATAATATCACTGTGGAAAATAATCAAACACTACTTAAAGATATATTATTTGTCCCTTTTGGGGTTTACTGCGATTGTAAAATAATGTATATTTTGCTACATTTGAAGTgatataaaacatttgattttgaATGTTGATCTAGGTTTGGTAATGTATTTGTTGTATTTGCCTCAATGGATCATCAAGGTGTTTTCTCATTCAATCTACAACAGTATGCAACAAGATACTCGGTGTGAAAATAATGATTTGCACATTCACCTTACAATATCAAACTCTGTGCTTCAATGATTGATGCGTAAAGGGGTGGATGAGATGATTTCTGAATTTGTACAGTATGAAGTGTTGAAAGCAGCCATTTCAGTTACTATTGTGTGTGAAGGCACTTATAATGAATCAAATTTGTTTAGAAAATAATATATTTGGGTAATTGGTATATTATTGTACTTTAGTTTCTTCTAGATTTCAGAATGCCTTTCCatttgtattatatgttatgCCTGTACTTTGGAACTGACTGAAAGCTAGATGATGATTTATGTTTACAACTAATCTTAAAATGTGTGTCAAGTCTTGTGGAGTATGCAGGCTTGATGTTTGTGGCATGCCCTCAGTGTTTTTACTGAATCGAGTCATGGAATGGAATAAAATGGCAGCAGGTCAGCTTTCAAA
>XM_021562620.2
TATGAGTAGAAAAATAAAATGCAACTCACGAGCTTCCGTAGTCAACAAACTGATGAAGGAAAGGTCTCCTGAAACCAGTAACGGCAACATCTCACTACATTTTAGCCAGTGAGAACTTAAATATTAATAATTGTTTCATTACATTATTAGTAGACTACACAGCAGAGCTGCCACTGGACCAGATGGCTGCGAAAATCAACGAGGCGCACGACCACATTGCCAAGGCTGAAAAATATTTAAAGactagcttcatgaaatggaagCCTGACTATGACAGTGCTGCATCAGAGTACTCAAAAGCAGCTGTTGCCTTTAAAAATGCCAAGATGCTTGAAGAAGCGAAGGAGGCATACCTGCAAGAGGCAGAGGCACATACCAACAACAAAACACTTTTCCATGCAGCCAAAGCACTTGAGGCAGCTGGTATGATGCTCAAGgACATGCAGAGGATACCAGAGGCTATCCAGTATATTGAGAGAGCAAGCATGATGTATGTAGAGAATGGCACACCAGACACTGCAGCCTTGGCCCTCGACAGAGCTGGAAAGCTAATCGAATCACAGGATCTAGCAAAAGCAGTGGATCTGTACCAGAAAGCTGCATCAGTGTTTGAGAATGAAGACCGTCTACGTCAAGCTGTAGAGATGCTGGGGAAAGCATCAAGACTTCTCGTCAGGCAACACAAGCTTGATGAAGCAGCAGTGTCGATTCAGAAGGAGAAGAACATGTATAAAGAAATAGAGAATTACCCAACGTGTTTTAAGAAAACCATTGCCCAAGTGCTAGTCCACCTTCACAGAAATGACTTCGTAGCAGCAGATAAATGTGTTCGAGAGAGTTATAGTCTGCCAGGCTTCAGTGGGAGTGAGGACTGTATTGCCTTGGAGCAGCTCCTGCAGGGCTACGATGAGCAGGATGAGGACCAAGTGCACTGCGTCTGTAACTCGCCCTTATTCAAGTACATGGACAATGATTATGCAAAGTTGTCCATCAGCCTGAGGGTTCCAGGGGGGGGTAAGAAGAAGGCTCCTGCTTCAGCTGCCGATGCTGGGGAAGGAGCGGAGGCAGGGGAGGCTGATGAGGATGAGTACGCTGGTGGGCTATGTTAGCCACAGAACCTGGACTTCCTGTCTGGACCAGAGCACTTCCAGTTACCTGTTAAGGATGGGTGTCGGAATCTTCCACACCCTCCCATTCTCAGCATGCCAGGGGGTCGTGAACTTTGCCTTGCCTCCCATCGCCAGATGTACAACTGTAGGCACTCTAACCATCAAGCATAACAACGAGTTATGCTCATAACAATAACATAAGCATGGTAATATAATATCACTGTGGAAAATAATCAAACACTACTTAAAGATATATTATTTGTCCCTTTTGGGGTTTACTGCGATTGTAAAATAATGTATATTTTGCTACATTTGAAGTgatataaaacatttgattttgaATGTTGATCTAGGTTTGGTAATGTATTTGTTGTATTTGCCTCAATGGATCATCAAGGTGTTTTCTCATTCAATCTACAACAGTATGCAACAAGATACTCGGTGTGAAAATAATGATTTGCACATTCACCTTACAATATCAAACTCTGTGCTTCAATGATTGATGCGTAAAGGGGTGGATGAGATGATTTCTGAATTTGTACAGTATGAAGTGTTGAAAGCAGCCATTTCAGTTACTATTGTGTGTGAAGGCACTTATAATGAATCAAATTTGTTTAGAAAATAATATATTTGGGTAATTGGTATATTATTGTACTTTAGTTTCTTCTAGATTTCAGAATGCCTTTCCatttgtattatatgttatgCCTGTACTTTGGAACTGACTGAAAGCTAGATGATGATTTATGTTTACAACTAATCTTAAAATGTGTGTCAAGTCTTGTGGAGTATGCAGGCTTGATGTTTGTGGCATGCCCTCAGTGTTTTTACTGAATCGAGTCATGGAATGGAATAAAATGGCAGCAGGTCAGCTTTCAAA

Function

NR:

description
PREDICTED: gamma-soluble NSF attachment protein-like

GO: NA

KEGG:

id description
K21198 NAPG, SNAPG; gamma-soluble NSF attachment protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944027.1 False 1419 mRNA 0.43 12 19768953 19772377
XM_021562621.2 False 2001 mRNA 0.42 13 19768954 19773398
XM_021562620.2 True 1989 mRNA 0.42 12 19768955 19773398

Neighbor

gene id symbol gene type direction distance location
LOC110489748 LOC106590337 coding upstream 18847 19726580 ~ 19750106 (+)
LOC110489746 LOC106590339 coding upstream 54109 19708869 ~ 19714844 (+)
LOC110490938 NA coding upstream 67211 19695171 ~ 19701742 (+)
zbtb14 LOC106590341 coding upstream 76331 19684897 ~ 19692622 (+)
epb41l3a LOC106590342 coding upstream 88843 19598284 ~ 19680110 (+)
LOC110490828 LOC101268971 coding downstream 279231 20052629 ~ 20055980 (+)
gcm2 LOC106590332 coding downstream 315378 20088776 ~ 20093865 (+)
mak mak coding downstream 359359 20132757 ~ 20146308 (+)
tfap2a tfap2a coding downstream 378959 20152357 ~ 20165444 (+)
ofcc1 ofcc1 coding downstream 535249 20308647 ~ 20420757 (+)
G1266156 NA non-coding upstream 339 19767307 ~ 19768614 (+)
G1266151 NA non-coding upstream 6522 19760138 ~ 19762431 (+)
G1266153 NA non-coding upstream 13108 19755176 ~ 19755845 (+)
G1266041 NA non-coding upstream 275297 19492797 ~ 19493656 (+)
G1265889 NA non-coding upstream 472541 19295932 ~ 19296412 (+)
G1266159 NA non-coding downstream 757 19774155 ~ 19774960 (+)
G1266161 NA non-coding downstream 4073 19777471 ~ 19777680 (+)
G1266158 LOC106590335 non-coding downstream 5302 19778700 ~ 19778951 (+)
G1266163 NA non-coding downstream 7673 19781071 ~ 19781416 (+)
G1266164 LOC106590335 non-coding downstream 8087 19781485 ~ 19781805 (+)
LOC110489737 LOC106590377 other upstream 906442 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 3874789 15885437 ~ 15895996 (+)
G1261980 NA other upstream 4032536 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 4062414 15696896 ~ 15706601 (+)
G1267949 pck2 other downstream 1066897 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 2012823 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 3359461 23132828 ~ 23146739 (+)
G1270643 NA other downstream 3603910 23377308 ~ 23377560 (+)
G1270652 NA other downstream 3633262 23406660 ~ 23408002 (+)

Expression


Co-expression Network