eef1e1 (eef1e1)


Basic Information

Item Value
gene id eef1e1
gene name eef1e1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20636594 ~ 20644188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562652.2
TCTAGTGGGCAGGAGTGAGTCATTTCAACCAGTCCTGTGCCATCCCCCTTGTCCCATCGTTTGCAAAGATGTCGTTGAAAGAGCTATCCTCGCTGGAAAAGGCTTTAGGATTGAAAAAGCCTAACAAATACAGTACTCAGGGGGATAGGAAGGTCCCAGTCCTCCAGACTATTAATGGACAAGCTCTGGTCGGCTTGGTGACCATCGCCACTCACCTGGTCCAGGAGGCCAAGCGGCCCGAGTTGCTGGGTGGGTCAGCAGAACACAAGGCTGTAGTGCAGCAGTGGCTGGAGTACAGAGTCACCAAAGTGGACGGATGCCACAAAGAAGATATCAAGACCATACTAAAGGACCTCAACAGTTATCTAGAAGACAAGGTTTACCTGGCAGGAAATCAGTTCACCCTAGCCGACACACTCATGTACTACGGAATTCATCACGTCATCgtGGACCTGGCCGTCCAGGAGAAGGAGAAGTACATGAACATGACGAGGTGGTTCGATCACGTACAGCACTACCCCAGCGTCCGGCACCACCTGCCCCCCGTGGTGGTCCTGAGGAACAGAGTCTACACCAGCGGCCACCACTGATGTTTCCTGTCCCGTCAGGGTGCACTGCTGGCTGCCAGGATGGCCCAGGGCGGACTTGAGGGCTAAACAGGGGGGTGCTGACATCTCATCCTCCCCACCTACCCAACAGTATGGGCCCCTCCCTCGCCTTCAAGACGTTCTgtgtctttttgttgttgttgttgttgggagtCTGTCTGGTTTTTTTTATGACTGCAGATGCTGTCAGTGTCAAGGTGTAGGGATATTCTAGTGATGCTATCTGAAACTGGCTCCCTGAAAACATTCTGGCTGGTGAATGGCAGTAGGGTTTGCTGATACCTGTCAGCAATTCTTGTCTTTtcacttaaagggatagttcacccaaattacaaaatgacattggtttccttaccctgtaagcagtctatggacatggTATTACAGCAATCAATAGTTTAGTTCCCCATGCACTGTTAACACGTGCTAATGTTTTAGcgtttgtggcacaaatcccattcaagtcatagAACTGATATTAGCATTTTTTGTTCAAATCATCTATGATTTTGTTGAACTGCACAAACAATTTGAGATAATTTGGATGATTTAGACATGATGCGCTAAATGGGCTAATATCAGTCCCTTGACTTGATTGAGATTTGTGCCCAAATGCTGAAatgttagcatgtggaaacagtgccagggaaactaaaaacaaagcatggattgctgtaataccttgtccatagactgcttacaggttaaggaaaccaatgtcattttgtaatttgggtgaactatccattTAACCTAAGCCATGATTGTGAAACATTATTATTAGAAAGTACAAGTGAGTTAATAGTTTGCAATGTCGCTTTTAAAAAAGTCCCTCTTTTGCAATTTCAATGTCTCAACATGTTACTTAAACAAAATAGTTCCAGTCTGCCCAACTGTGTTCAACTATGTAATCATCATCCACCACAGATCCCAGGTCCATTATCAACTTTCTGTCCTCATGAATTTATTCTTCAGTCTTAGTTTCTCAAGCTGCTGTTCCACCAGCAGCGTGGGCAGCAGCCTCTAGTTCAGATCAGAGTCACTCGAATCAATCTGTGTGTTGATGCTGAAGGGCAGAGGGCAGACTACCAGCTGCCATAGAGGCCACAGCGTGCCTCTGTCCAATGCCAGAGCCCTGGGTGACAGCCACGCATTGTGTGTCATTTCACCCTCTTACCCATGGGGAGAGGGGCCCAGGGGGTGGGAAATCATTTTACGAAAACATCCGAGCGATAATACACACTCGCACCACTCACACAGCAGACTGGATTTAGCCATTAGCTCTGTCAGTGGTAGGAATCAcagctaatatatatatattgaaatcGCTGTGTTTGCACAACAAAATAGTTGGGTAATCTTTGTCTTAATTGTGAAAACTTTATCTGGTGTGTCAAACTGTTAACTGGTTTACATTGTTACACTTTCATCCAGCCTGTGTTTTGTCATATACACCCTTCTTGGCCCTCCTAGTTTTCTGATGTTCTTCCTTATGACGGCTGCTGCTTTAATGCTATGTTTTTGTGTTATTTAAGTCTACAGAAGGTTGTCCTGTGCCAATAAAAATCAAAGGGAAACAAAGATAATCATC
>XM_021562653.2
TCTAGTGGGCAGGAGTGAGTCATTTCAACCAGTCCTGTGCCATCCCCCTTGTCCCATCGTTTGCAAAGATGTCGTTGAAAGAGCTATCCTCGCTGGAAAAGGCTTTAGGATTGAAAAAGCCTAACAAATACAGTACTCAGGGGGATAGGAAGGTCCCAGTCCTCCAGACTATTAATGGACAAGCTCTGGTCGGCTTGGTGACCATCGCCACTCACCTGGTCCAGGAGGCCAAGCGGCCCGAGTTGCTGGGTGGGTCAGCAGAACACAAGGCTGTAGTGCAGCAGTGGCTGGAGTACAGAGTCACCAAAGTGGACGGATGCCACAAAGAAGATATCAAGACCATACTAAAGgtGGACCTGGCCGTCCAGGAGAAGGAGAAGTACATGAACATGACGAGGTGGTTCGATCACGTACAGCACTACCCCAGCGTCCGGCACCACCTGCCCCCCGTGGTGGTCCTGAGGAACAGAGTCTACACCAGCGGCCACCACTGATGTTTCCTGTCCCGTCAGGGTGCACTGCTGGCTGCCAGGATGGCCCAGGGCGGACTTGAGGGCTAAACAGGGGGGTGCTGACATCTCATCCTCCCCACCTACCCAACAGTATGGGCCCCTCCCTCGCCTTCAAGACGTTCTgtgtctttttgttgttgttgttgttgggagtCTGTCTGGTTTTTTTTATGACTGCAGATGCTGTCAGTGTCAAGGTGTAGGGATATTCTAGTGATGCTATCTGAAACTGGCTCCCTGAAAACATTCTGGCTGGTGAATGGCAGTAGGGTTTGCTGATACCTGTCAGCAATTCTTGTCTTTtcacttaaagggatagttcacccaaattacaaaatgacattggtttccttaccctgtaagcagtctatggacatggTATTACAGCAATCAATAGTTTAGTTCCCCATGCACTGTTAACACGTGCTAATGTTTTAGcgtttgtggcacaaatcccattcaagtcatagAACTGATATTAGCATTTTTTGTTCAAATCATCTATGATTTTGTTGAACTGCACAAACAATTTGAGATAATTTGGATGATTTAGACATGATGCGCTAAATGGGCTAATATCAGTCCCTTGACTTGATTGAGATTTGTGCCCAAATGCTGAAatgttagcatgtggaaacagtgccagggaaactaaaaacaaagcatggattgctgtaataccttgtccatagactgcttacaggttaaggaaaccaatgtcattttgtaatttgggtgaactatccattTAACCTAAGCCATGATTGTGAAACATTATTATTAGAAAGTACAAGTGAGTTAATAGTTTGCAATGTCGCTTTTAAAAAAGTCCCTCTTTTGCAATTTCAATGTCTCAACATGTTACTTAAACAAAATAGTTCCAGTCTGCCCAACTGTGTTCAACTATGTAATCATCATCCACCACAGATCCCAGGTCCATTATCAACTTTCTGTCCTCATGAATTTATTCTTCAGTCTTAGTTTCTCAAGCTGCTGTTCCACCAGCAGCGTGGGCAGCAGCCTCTAGTTCAGATCAGAGTCACTCGAATCAATCTGTGTGTTGATGCTGAAGGGCAGAGGGCAGACTACCAGCTGCCATAGAGGCCACAGCGTGCCTCTGTCCAATGCCAGAGCCCTGGGTGACAGCCACGCATTGTGTGTCATTTCACCCTCTTACCCATGGGGAGAGGGGCCCAGGGGGTGGGAAATCATTTTACGAAAACATCCGAGCGATAATACACACTCGCACCACTCACACAGCAGACTGGATTTAGCCATTAGCTCTGTCAGTGGTAGGAATCAcagctaatatatatatattgaaatcGCTGTGTTTGCACAACAAAATAGTTGGGTAATCTTTGTCTTAATTGTGAAAACTTTATCTGGTGTGTCAAACTGTTAACTGGTTTACATTGTTACACTTTCATCCAGCCTGTGTTTTGTCATATACACCCTTCTTGGCCCTCCTAGTTTTCTGATGTTCTTCCTTATGACGGCTGCTGCTTTAATGCTATGTTTTTGTGTTATTTAAGTCTACAGAAGGTTGTCCTGTGCCAATAAAAATCAAAGGGAAACAAAGATAATCATC

Function

symbol description
eef1e1 Predicted to act upstream of or within positive regulation of DNA damage response, signal transduction by p53 class mediator. Predicted to be part of aminoacyl-tRNA synthetase multienzyme complex. Orthologous to human EEF1E1 (eukaryotic translation elongation factor 1 epsilon 1).

NR:

description
eukaryotic translation elongation factor 1 epsilon-1 isoform X2

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0003746 translation elongation factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562652.2 False 2199 mRNA 0.45 4 20636594 20644188
XM_021562653.2 True 2103 mRNA 0.45 3 20636594 20644188

Neighbor

gene id symbol gene type direction distance location
slc35b3 slc35b3 coding upstream 53787 20566636 ~ 20582807 (+)
ofcc1 ofcc1 coding upstream 215837 20308647 ~ 20420757 (+)
tfap2a tfap2a coding upstream 471150 20152357 ~ 20165444 (+)
mak mak coding upstream 490286 20132757 ~ 20146308 (+)
gcm2 LOC106590332 coding upstream 542729 20088776 ~ 20093865 (+)
bloc1s5 bloc1s5 coding downstream 13026 20657214 ~ 20660349 (+)
txndc5 LOC106590251 coding downstream 29741 20673929 ~ 20689970 (+)
rec8b rec8 coding downstream 106996 20751184 ~ 20775305 (+)
nanog LOC106590258 coding downstream 147899 20792087 ~ 20795036 (+)
LOC110490942 NA coding downstream 158391 20801241 ~ 20804982 (+)
G1267748 NA non-coding upstream 96859 20539428 ~ 20539735 (+)
G1267744 NA non-coding upstream 105286 20531064 ~ 20531308 (+)
G1267706 NA non-coding upstream 139619 20496486 ~ 20496975 (+)
G1267697 NA non-coding upstream 148148 20488216 ~ 20488446 (+)
G1267695 NA non-coding upstream 149856 20486494 ~ 20486738 (+)
G1267818 NA non-coding downstream 7382 20651570 ~ 20651775 (+)
G1267819 NA non-coding downstream 9246 20653434 ~ 20653653 (+)
G1267830 NA non-coding downstream 45940 20690128 ~ 20690515 (+)
G1267840 NA non-coding downstream 48596 20692784 ~ 20693031 (+)
G1267848 NA non-coding downstream 59372 20703560 ~ 20704163 (+)
epb41l3a LOC106590342 other upstream 956489 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 1774083 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 4742430 15885437 ~ 15895996 (+)
G1261980 NA other upstream 4900177 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 4930055 15696896 ~ 15706601 (+)
G1267949 pck2 other downstream 196107 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 1142033 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 2488671 23132828 ~ 23146739 (+)
G1270643 NA other downstream 2733120 23377308 ~ 23377560 (+)
G1270652 NA other downstream 2762472 23406660 ~ 23408002 (+)

Expression


Co-expression Network