bmp6 (bmp6)


Basic Information

Item Value
gene id bmp6
gene name bmp6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20690871 ~ 20724923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562656.2
ACCTGCTAATGCCCGTTACTCAGAACTCAGACTCATACACTGCAGATACACATTCAACCGGTGGAATTGAGGAAACTTCAAGTTAAGGGGTTATTTCTTCTACGCAACATTGGGAAATATTGTATTTAAGAattaaatacatacagtagagtacaatggTTTCTTTCAGAGTTATATTTTTACCAGAAAACATGTCGTGTAACTTTTAATTTTGACTGGGTCTGACTTGGACTTACCGAAGCGTTCATAAGTTGTTTTACATGCTGCCTTTGACGCAGAAAGCCGAGCTGTGGTCTTGGAGACTTTTCAGAAATTATGAAGACCAATTTTACGAACATTTTTTGTTGGATGATATTGCATAATGCGTGAATGATTCTCGATTTATTTCAAATGAGCTACTTTAGCTTTCAGTGAGAACAAGGAGCTAATTTGAAGAAAAACAATTGAAACTTATTGAAACCGTACGTCAGAGATACACTGACTAGAAAGTGGACATACAATGACAAGCTGTTGGTTTGCCTTTGTGGGTTTGTGGTGGAGCGCTTATTGCATGTTCCTTATTGCAGGTAGCAATTATTTATTCGATGGGAACAACGAGGTACACCCAAGTTTCATTCACCGGCGGTTGCGGACTCACgaaaagagagagatgcagaaggAGATCCTCTCCATCCTTGGACTTCCACACAGACCAAGACCGCATCTGTCACATGGAAAGTACAACTCCGCTCCGCTCTTCATGCTGGATCTTTACAATACGATATCCAGCGAGGAGAAAAACGAAGTGGAGGGCATGTTGGAACAGTACCAGTCCATGTACACCACCCAAGGTCCCCCTTTGGCAACATATCAGGAGAATGCCTTCCTAAATGACGCCGACATGGTGATGAGCTTTGTCAATTTGGTGGAGGACGATAGAGAGCTGTCGCCACACAGACGGCACCACAAGGAGTTCAAGTTCAACCTGTCCCAGATCCCAGAGGGAGAGGCTGTCACCGCCTCCGAGTTCCGCCTCTACAAGGAGTGTGTGAGCCGGACCTTCCGCAATGAGACCCTCCTGCTCAATGTCTACCAAGTGGTACAGGAGCACCCcaacagGGAAGCAGACCTGTTCCTGCTGGAGTCTCGCAGGCTGTGGGCGGCCGAGGAGGGCTGGCTGGAGTTTGACATCACGGCCACCAGTAACCTGTGGGTGATGAGTCCCCACAACAACATGGGCCTCCAGATCAGAGTGGAGACCAGCAGTGGGCGGAGCATTAGCTCCAAGGAGGCGGGACTAGTTGGGCGTGACGGAGCGCTGGAGAAGCAGCCCTTCATGGTGGCCTTCTTCAAAGTTAGCGAGGTGCACATCCGCACCGCCCGCTCCACCAACAAGAACCGCAACAAGAACCGCAACCGCCCCACACAGCCCCAGGAAGGAGGCTCCAGGGGCCCAAGCCCAGCAGAATACAACAGCAGTGACCAGAAGACAGCCTGTAGGAGACATGAGCTCTACGTCAGCTTCCGGGAGCTGGGCTGGCAGGACTGGATCATTGCACCTGAGGGCTACGCAGCCAACTACTGTGACGGAGAGTGCTCCTTCCCCCTCAACGCCCATATGAATGCCACCAACCATGCCATTGTGCAGACACTGGTCCACCTCATGAACCCGGAGAACGTGCCCAAGCCCTGCTGCGCCCCCACCAAGCTGCACGCCATCTCCGTGCTCTACTTCGACGACAACTCCAATGTCATCCTGAAGAAGTACAAGAACATGGTGGTGAGGGCCTGTGGCTGCCACTGACGACCGCCAAACTGCCGCGTCATCATGGTCACCCGCCCATGGGCTGCAGCGGAGACTGTGTGAACACGACATCATGGGTCtgcgtgtttgtgagtgtgtgttgtgtactaccctctcctctcccatactCAGGGCGAGGAAGGAACTGATAAATGGACCAGACCAATGtgctgctcccccccccccctcctttcaaAACTAAGTGGTGTTCAAGTTCTCAGACGGCTAATGGCCCATTACAGCGAAACAACTCGACGGCGTCGGGGAATTGACTCAATGTTATCTCAATACTGACAGCCAACCTGTTACATGACGTCAGGTGTAGTCaaatgacacaaaacatgtaGAAATCCTTTTATAGGACCGCAGGGGAAAAGCATTAGCCTAACTACACCAATTTTAATAGAGATGTATGTATATTGTCTGACTAACCAAAGCCTGAT

Function

symbol description
bmp6 Predicted to enable BMP receptor binding activity and cytokine activity. Predicted to be involved in BMP signaling pathway; SMAD protein signal transduction; and positive regulation of pathway-restricted SMAD protein phosphorylation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including choroidal fissure; ectoderm; epidermis; fin; and ventral mesoderm. Orthologous to human BMP6 (bone morphogenetic protein 6).

NR:

description
bone morphogenetic protein 6

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04662 BMP4; bone morphogenetic protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562656.2 True 2226 mRNA 0.50 7 20690871 20724923

Neighbor

gene id symbol gene type direction distance location
LOC110489759 NA coding downstream 124012 20556772 ~ 20566859 (-)
tmem14ca tm14c coding downstream 542148 20146283 ~ 20148723 (-)
sycp2l sycp2l coding downstream 603682 20063092 ~ 20087189 (-)
gnal LOC106590334 coding downstream 659778 19964439 ~ 20031093 (-)
impa2 impa2 coding downstream 740079 19945007 ~ 19950792 (-)
zgc:101569 LOC106590252 coding upstream 4083 20729006 ~ 20752125 (-)
pdcd6 LOC106590254 coding upstream 27584 20752507 ~ 20760847 (-)
ipo4 ipo4 coding upstream 53048 20777971 ~ 20789485 (-)
tm9sf1 tm9sf1 coding upstream 70195 20795118 ~ 20801160 (-)
LOC110489769 pck2 coding upstream 115280 20840203 ~ 20864315 (-)
G1268462 NA non-coding downstream 28590 20662074 ~ 20662281 (-)
G1268461 NA non-coding downstream 29079 20661561 ~ 20661792 (-)
G1268430 bloc1s5 non-coding downstream 30523 20657858 ~ 20660348 (-)
G1268457 NA non-coding downstream 36349 20654320 ~ 20654522 (-)
G1268456 NA non-coding downstream 37013 20653643 ~ 20653858 (-)
G1268516 NA non-coding upstream 49397 20774320 ~ 20775233 (-)
G1268568 NA non-coding upstream 149438 20874361 ~ 20874581 (-)
G1268570 NA non-coding upstream 156528 20881451 ~ 20881800 (-)
G1268604 NA non-coding upstream 237166 20962089 ~ 20962325 (-)
G1268610 NA non-coding upstream 246413 20971336 ~ 20971643 (-)
G1267452 NA other downstream 400198 20290350 ~ 20290673 (-)
G1267414 NA other downstream 422383 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 1237101 19435018 ~ 19453770 (-)
G1266471 NA other downstream 1581514 19108559 ~ 19109357 (-)
G1265456 LOC106590371 other downstream 2110708 18576539 ~ 18580163 (-)
G1268555 LOC106590243 other upstream 233449 20958372 ~ 20960089 (-)
G1269265 NA other upstream 1077764 21802687 ~ 21803352 (-)
G1271421 NA other upstream 2988432 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 5321325 26046058 ~ 26048599 (-)
G1275015 NA other upstream 5786602 26511525 ~ 26512075 (-)

Expression


Co-expression Network