nanog (LOC106590258)


Basic Information

Item Value
gene id nanog
gene name LOC106590258
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20792087 ~ 20795036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562668.2
TTTTGAACTTCTGGAAGGGTGGTTTCGGAGTTTTCCATCTTTAGGAAACTGCGTGGTAATTTGTTTGGACGGTTTCTTGTTCACATAGGCCTATTAACGTTAGTGAAAAATATGGCAGACTGGAAGGTACCAGTGAGCTTCAACCCATCCTACCACGCTTTTGCCTATGGTCTCGTGTACCAACCAGGGGCTGAGCAAAACCATCCTAACTTCTCCAGCTGGACAGAGGCCACATACAACTCTGGGGTCAGCGCCAGCTACTACTCGCAAGCGCAGCCACAGCATCAATCACCATCCTGGAGTCCCGAACTAAACAATGCTGGCACAAGCAATGGCCAATACCCGGGTTCTGTGGTATGTCTTGGTGACCCTCACAGCCATACCCAGAGTGGCCGCCTCTTCATTTCCAACAACCGGGCTCCGCATGATTCGCAAACGGAGACCGAGCGGCCAAGTAGCGACACCCAGAGCGACTCAGAGACTCACACCTCACCAGAGTCTTTGAGTTCAGTGAACGACCGAGAGGAGTACAATCCGCAAGCCAACCATACCACCTGGGTGAGAAATGAGTTGGCGACAGCCAGTGGAAGCCCAAATAGCAGTGAGCATGTCTCGAGTTCACATCCAGAGGAGTTTCGAAGTCCACACGTTATGGGGAGTGAGAACTGCACCCTGCAGTCATTGCCCCCTTCCCCAGAGAAAGTGGACAAGaatatcccccccaaaaaagctcGAACTGCTTTCTCAACAGGCCAAATGGATGCCCTTACTCATAGGTTTAACATGCAGAAGTACCTCACCCCTGCTGAGATGAAGACCCTGGCTAGACTGACTGGGCTTACTTACAAACAGGTAAAAACATGGTTCCAGAATCGCAGGATGAAACTGAAGAGGCACCAGAAAGATGACAGCTGGGcatcacctggctaccccaaccctggcTACCCCAACATGCCACAGCGCCCCCAGTTTCAGGGCAAACCCCAAGCACAGATCCAGGACCACACCATTGCTCAACAGTTTCGAGAGACCATGTTAAGGAGGAGTCCTCAACAGAACCTGCCTTACTATGCTGTTGGGTATCCTCGGCCATCCTCTCCCCCCCAGCCCCCTGCAAGGCCCCCGGGCATCTGGCCCCTGCCCCCAGCTGTGACCCACCATGAGTACCCCAATGGCTACAGCACAAACCACCATACTAGCATCAACAGTGATGACTGGAAAGTCATGAGCCCCATGCACAAGTCTAGCCAATAACCAACAAGAGGTAAAATGTTAGTGGTCATGGTGGTAAATTTACTGGATTGTCAACAGTGTTTTTGTTTTGAATGATTATTACAATTAAGCTTCAGACAGGCAATTCTCCATTTGGTGACGAGGTGTTGGCTTATCTTATCAATCTGTTTGAACCATTCGCCGGCCCCATGTGAATTGTATCCCTTCGTATTCATTAAGAAAAATCTGAAGTTTGATGTTTTATACCTTCCAAAGTTCTTATCTGTGTATTTAATATCGTTGCTGTTTTGGCATTCTGCTTTTTGATACTACTCTGACGAAGCTTTGCTGTGTCTGCTGGAAGTGGCATGCTTTTATTCCCTCACTAGCCTATTTGTTGATGTGATCTGTGCAAGGCACTACTGAATGTTTGTTGGTCCATGCTGCACCAGATTTGTATCCTATTGGATGCTTTTAACATTACTGCCATGTTTTATGACCTTGTTGTACAGTGTGATGCCCCCCATGTCAGGGTTGTTTAGTAGGCCCAAAATGGGGGGGGGGAATGCATTGACATGTACAATAAGTGgttttcttggctgatttcaaaATACTACCTCCCAGTTTCAATTTGTTTACACTTTGTGCCTACAGAACAATGCCAATGTCTTcaggtgtttttttatttttaataaatactAGTTGTATAGTCAACCTATTAAATTGTGGGATTTACTTATCTTGGGTGATGTACTACTGACATTTTGGGCAAATGGTTTACTGATAGTTTAACTTGATTAGTCTTTTCTTTGAAGGCATAGTAAGCTGA
>XM_021562669.2
TTTTGAACTTCTGGAAGGGTGGTTTCGGAGTTTTCCATCTTTAGGAAACTGCGTGGTAATTTGTTTGGACGGTTTCTTGTTCACATAGGCCTATTAACGTTAGTGAAAAATATGGCAGACTGGAAGGTACCAGTGAGCTTCAACCCATCCTACCACGCTTTTGCCTATGGTCTCGTGTACCAACCAGGGGCTGAGCAAAACCATCCTAACTTCTCCAGCTGGACAGAGGCCACATACAACTCTGGGGTCAGCGCCAGCTACTACTCGCAAGCGCAGCCACAGCATCAATCACCATCCTGGAGTCCCGAACTAAACAATGCTGGCACAAGCAATGGCCAATACCCGGGTTCTGTGGTATGTCTTGGTGACCCTCACAGCCATACCCAGAGTGGCCGCCTCTTCATTTCCAACAACCGGGCTCCGCATGATTCGCAAACGGAGACCGAGCGGCCAAGTAGCGACACCCAGAGCGACTCAGAGACTCACACCTCACCAGAGTCTTTGAGTTCAGTGAACGACCGAGAGGAGTACAATCCGCAAGCCAACCATACCACCTGGGTGAGAAATGAGTTGGCGACAGCCAGTGGAAGCCCAAATAGCAGTGAGCATGTCTCGAGTTCACATCCAGAGGAGTTTCGAAGTCCACACGTTATGGGGAGTGAGAACTGCACCCTGCAGTCATTGCCCCCTTCCCCAGAGAAAGTGGACAAGaatatcccccccaaaaaagctcGAACTGCTTTCTCAACAGGCCAAATGGATGCCCTTACTCATAGGTTTAACATGCAGAAGTACCTCACCCCTGCTGAGATGAAGACCCTGGCTAGACTGACTGGGCTTACTTACAAACAGGTAAAAACATGGTTCCAGAATCGCAGGATGAAACTGAAGAGGCACCAGAAAGATGACAGCTGGGcatcacctggctaccccaaccctggcTACCCCAACATGCCACAGCGCCCCCAGGGCAAACCCCAAGCACAGATCCAGGACCACACCATTGCTCAACAGTTTCGAGAGACCATGTTAAGGAGGAGTCCTCAACAGAACCTGCCTTACTATGCTGTTGGGTATCCTCGGCCATCCTCTCCCCCCCAGCCCCCTGCAAGGCCCCCGGGCATCTGGCCCCTGCCCCCAGCTGTGACCCACCATGAGTACCCCAATGGCTACAGCACAAACCACCATACTAGCATCAACAGTGATGACTGGAAAGTCATGAGCCCCATGCACAAGTCTAGCCAATAACCAACAAGAGGTAAAATGTTAGTGGTCATGGTGGTAAATTTACTGGATTGTCAACAGTGTTTTTGTTTTGAATGATTATTACAATTAAGCTTCAGACAGGCAATTCTCCATTTGGTGACGAGGTGTTGGCTTATCTTATCAATCTGTTTGAACCATTCGCCGGCCCCATGTGAATTGTATCCCTTCGTATTCATTAAGAAAAATCTGAAGTTTGATGTTTTATACCTTCCAAAGTTCTTATCTGTGTATTTAATATCGTTGCTGTTTTGGCATTCTGCTTTTTGATACTACTCTGACGAAGCTTTGCTGTGTCTGCTGGAAGTGGCATGCTTTTATTCCCTCACTAGCCTATTTGTTGATGTGATCTGTGCAAGGCACTACTGAATGTTTGTTGGTCCATGCTGCACCAGATTTGTATCCTATTGGATGCTTTTAACATTACTGCCATGTTTTATGACCTTGTTGTACAGTGTGATGCCCCCCATGTCAGGGTTGTTTAGTAGGCCCAAAATGGGGGGGGGGAATGCATTGACATGTACAATAAGTGgttttcttggctgatttcaaaATACTACCTCCCAGTTTCAATTTGTTTACACTTTGTGCCTACAGAACAATGCCAATGTCTTcaggtgtttttttatttttaataaatactAGTTGTATAGTCAACCTATTAAATTGTGGGATTTACTTATCTTGGGTGATGTACTACTGACATTTTGGGCAAATGGTTTACTGATAGTTTAACTTGATTAGTCTTTTCTTTGAAGGCATAGTAAGCTGA

Function

NR:

description
homeobox protein DLL homolog isoform X2

GO: NA

KEGG:

id description
K10164 NANOG; homeobox protein Nanog

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562668.2 False 2041 mRNA 0.47 4 20792087 20795036
XM_021562669.2 True 2035 mRNA 0.47 4 20792087 20795036

Neighbor

gene id symbol gene type direction distance location
rec8b rec8 coding upstream 16782 20751184 ~ 20775305 (+)
txndc5 LOC106590251 coding upstream 102117 20673929 ~ 20689970 (+)
bloc1s5 bloc1s5 coding upstream 131738 20657214 ~ 20660349 (+)
eef1e1 eef1e1 coding upstream 147899 20636594 ~ 20644188 (+)
slc35b3 slc35b3 coding upstream 209280 20566636 ~ 20582807 (+)
LOC110490942 NA coding downstream 7543 20801241 ~ 20804982 (+)
LOC110490943 LOC106590259 coding downstream 17373 20812409 ~ 20815510 (+)
LOC110489770 psme1 coding downstream 79831 20874867 ~ 20879233 (+)
zfhx2 zfhx2 coding downstream 111834 20906870 ~ 20920263 (+)
pabpn1 LOC106579615 coding downstream 132284 20927320 ~ 20943689 (+)
G1267867 NA non-coding upstream 13589 20777986 ~ 20778498 (+)
G1267877 NA non-coding upstream 51247 20738895 ~ 20740840 (+)
G1267850 NA non-coding upstream 86868 20705013 ~ 20705219 (+)
G1267849 NA non-coding upstream 87419 20704330 ~ 20704668 (+)
G1267848 NA non-coding upstream 87924 20703560 ~ 20704163 (+)
G1267962 NA non-coding downstream 107457 20902493 ~ 20902707 (+)
G1267965 NA non-coding downstream 109229 20904265 ~ 20904519 (+)
G1267986 NA non-coding downstream 174246 20969282 ~ 20969935 (+)
slc22a17 slc22a17 non-coding downstream 176879 20971804 ~ 20983450 (+)
epb41l3a LOC106590342 other upstream 1111982 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 1929576 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 4897923 15885437 ~ 15895996 (+)
G1261980 NA other upstream 5055670 15735930 ~ 15736417 (+)
LOC110489686 LOC106590396 other upstream 5085548 15696896 ~ 15706601 (+)
G1267949 pck2 other downstream 45259 20840295 ~ 20841398 (+)
slc12a7b LOC106590280 other downstream 991185 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 2337823 23132828 ~ 23146739 (+)
G1270643 NA other downstream 2582272 23377308 ~ 23377560 (+)
G1270652 NA other downstream 2611624 23406660 ~ 23408002 (+)

Expression


Co-expression Network