Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489770 |
| gene name | psme1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 20874867 ~ 20879233 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| psme1 | Predicted to enable endopeptidase activator activity. Predicted to be involved in positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be part of proteasome activator complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human PSME1 (proteasome activator subunit 1). |
| description |
|---|
| proteasome activator complex subunit 1 |
| id | description |
|---|---|
| K06696 | PSME1; proteasome activator subunit 1 (PA28 alpha) |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021562671.2 | True | 1402 | mRNA | 0.43 | 11 | 20874867 | 20879233 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490943 | LOC106590259 | coding | upstream | 59357 | 20812409 ~ 20815510 (+) |
| LOC110490942 | NA | coding | upstream | 69885 | 20801241 ~ 20804982 (+) |
| nanog | LOC106590258 | coding | upstream | 79831 | 20792087 ~ 20795036 (+) |
| rec8b | rec8 | coding | upstream | 99562 | 20751184 ~ 20775305 (+) |
| txndc5 | LOC106590251 | coding | upstream | 184897 | 20673929 ~ 20689970 (+) |
| zfhx2 | zfhx2 | coding | downstream | 27637 | 20906870 ~ 20920263 (+) |
| pabpn1 | LOC106579615 | coding | downstream | 48087 | 20927320 ~ 20943689 (+) |
| cebp1 | LOC106590243 | coding | downstream | 79182 | 20958415 ~ 20960083 (+) |
| slc22a17 | slc22a17 | coding | downstream | 92571 | 20971804 ~ 20983450 (+) |
| LOC100136149 | LOC100136486 | coding | downstream | 151424 | 21030657 ~ 21046564 (+) |
| G1267867 | NA | non-coding | upstream | 96369 | 20777986 ~ 20778498 (+) |
| G1267877 | NA | non-coding | upstream | 134027 | 20738895 ~ 20740840 (+) |
| G1267850 | NA | non-coding | upstream | 169648 | 20705013 ~ 20705219 (+) |
| G1267849 | NA | non-coding | upstream | 170199 | 20704330 ~ 20704668 (+) |
| G1267962 | NA | non-coding | downstream | 23260 | 20902493 ~ 20902707 (+) |
| G1267965 | NA | non-coding | downstream | 25032 | 20904265 ~ 20904519 (+) |
| G1267986 | NA | non-coding | downstream | 90049 | 20969282 ~ 20969935 (+) |
| G1268075 | NA | non-coding | downstream | 292729 | 21171962 ~ 21172222 (+) |
| G1267949 | pck2 | other | upstream | 33469 | 20840295 ~ 20841398 (+) |
| epb41l3a | LOC106590342 | other | upstream | 1194762 | 19598284 ~ 19680110 (+) |
| LOC110489737 | LOC106590377 | other | upstream | 2012356 | 18859697 ~ 18866106 (+) |
| mcmdc2 | mcmdc2 | other | upstream | 4980703 | 15885437 ~ 15895996 (+) |
| G1261980 | NA | other | upstream | 5138450 | 15735930 ~ 15736417 (+) |
| slc12a7b | LOC106590280 | other | downstream | 906988 | 21729755 ~ 21794253 (+) |
| LOC110489812 | rdh12 | other | downstream | 2253626 | 23132828 ~ 23146739 (+) |
| G1270643 | NA | other | downstream | 2498075 | 23377308 ~ 23377560 (+) |
| G1270652 | NA | other | downstream | 2527427 | 23406660 ~ 23408002 (+) |
| G1270669 | psme2 | other | downstream | 2566605 | 23445838 ~ 23451494 (+) |
