LOC110490944


Basic Information

Item Value
gene id LOC110490944
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20879486 ~ 20880386 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564362.2
ATGTTTCTCAACACAGTTCTGGTGGTTGTGACAGACCTTTGGGCTGGACTGCTTGGTAGTGCCATATTCAGACACCCTTTTCACCCTTTGATAATGAATGTATTCTTTATGCTACCTGATTTCACACAGATAATATTCACCAAGTATCCATACCATCTAAAGTCTGCTTTGAATTCTCTCAGGATGTTCCTGTGATCGTGCTGGGGTTGGGCCTGTGTCTTCACGggctccttcctcttctccatctgtcgataaccccctctctcccttcgccACCTCTCACGGATAGCTGTATGGTGGTGCTGTCACCATCTTCTGACTCTGCTGGAGAATGCAGCAGGTAGCGGCTACAAGCCAATGCCTGCTACACTGGATGGGGGCCTGAATCTTGGCCAGGGAACCAGTGTCCCAGGTCAGTCTTTACTCTTGCTCCATGAGGGCAAGGCCTCATGCCTGAAAGCGGGCATGCTGTTGCGAGGCTGGGAGGTTTCCGAGGACACCCTCCTCCTCTGCTGCCTCCTCCTGGCCGAGGAGACTGCCATATTGGGGCCCTACCTGGCCCTAGGAGGTCCCTCAGGAGGCCCCACCGTTCCTGCTTTGTGTCTCCCGCTGGGCTTGTGGCTGATCATGCTGTTCGGTCTGCTGGCTCACTTACCAAGTTTCCCCTCCCAGCTGCTGGGGGGAGCTCGAGGATATCTGGGCTGGAGGGGGCTGTAGCAGGGCTGGTATCATTTGCAACCCAGCTGATGCTGTCCTGGGTGGCCTGGAGAGGGACTACTCACCACCACTCAGAGAGCAGTGAGAGAGATGTCCATGACGTGTGGAGGCACTGACCAAAAAATGTATGTCTTAGGATAA

Function

NR:

description
LOW QUALITY PROTEIN: fat storage-inducing transmembrane protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564362.2 True 858 mRNA 0.54 4 20879486 20880386

Neighbor

gene id symbol gene type direction distance location
LOC110489769 pck2 coding downstream 15171 20840203 ~ 20864315 (-)
tm9sf1 tm9sf1 coding downstream 78326 20795118 ~ 20801160 (-)
ipo4 ipo4 coding downstream 90001 20777971 ~ 20789485 (-)
pdcd6 LOC106590254 coding downstream 118639 20752507 ~ 20760847 (-)
zgc:101569 LOC106590252 coding downstream 127361 20729006 ~ 20752125 (-)
dcaf11 dcaf11 coding upstream 4587 20884973 ~ 20901956 (-)
thtpa NA coding upstream 23843 20904229 ~ 20906476 (-)
ngdn ngdn coding upstream 68514 20948900 ~ 20954807 (-)
LOC110489780 NA coding upstream 121732 21002118 ~ 21007272 (-)
LOC110489781 NA coding upstream 138423 21018809 ~ 21037502 (-)
G1268568 NA non-coding downstream 4905 20874361 ~ 20874581 (-)
G1268516 NA non-coding downstream 104253 20774320 ~ 20775233 (-)
G1268462 NA non-coding downstream 217205 20662074 ~ 20662281 (-)
G1268461 NA non-coding downstream 217694 20661561 ~ 20661792 (-)
G1268430 bloc1s5 non-coding downstream 219138 20657858 ~ 20660348 (-)
G1268570 NA non-coding upstream 1065 20881451 ~ 20881800 (-)
G1268604 NA non-coding upstream 81703 20962089 ~ 20962325 (-)
G1268610 NA non-coding upstream 90950 20971336 ~ 20971643 (-)
G1268618 LOC106579614 non-coding upstream 101394 20981780 ~ 20986678 (-)
G1268763 NA non-coding upstream 347518 21227904 ~ 21228745 (-)
G1267452 NA other downstream 588813 20290350 ~ 20290673 (-)
G1267414 NA other downstream 610998 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 1425716 19435018 ~ 19453770 (-)
G1266471 NA other downstream 1770129 19108559 ~ 19109357 (-)
G1265456 LOC106590371 other downstream 2299323 18576539 ~ 18580163 (-)
G1268555 LOC106590243 other upstream 77986 20958372 ~ 20960089 (-)
G1269265 NA other upstream 922301 21802687 ~ 21803352 (-)
G1271421 NA other upstream 2832969 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 5165862 26046058 ~ 26048599 (-)
G1275015 NA other upstream 5631139 26511525 ~ 26512075 (-)

Expression


Co-expression Network