pabpn1 (LOC106579615)


Basic Information

Item Value
gene id pabpn1
gene name LOC106579615
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 20927320 ~ 20943689 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944043.1
GGTAGAAGGTGTGTCTACAATGCTTAATTGAGTAATAAGATTGCGAGTTTACGCCCGCAGTACGTAACTCCACCCCCGACTTCCATTTCTGAACTGAGGACACAGCACTCGCGAAGAGAATATTTTAGGTTATGTATATTTCTTAATGTAAATAAACTGTAACGTTAGGCTCTCCGCTGAAACtttgatatacacacacacaactgaagTAGCCTTTGCAATTGTAGTTGGAACCCGTTCGGACAGTGGCTAGAGTCGAAGCTGGCCTTTTATTTCACGTTTTAACTTTCCTAAGCGGCGGTTTCCGCCGTTTTTTTTCTTTCGCCCCACTCACTCTCCCGCTGTGTGAGTAGGGGCCTGTAACGTTGGTTTAAGCCACGAGGCGCGTCGGATAAACCGGAATTGGGAGATGGCGGAGTTCGGTAACGGAATGGACTCAGGGATGACGGAAGAATCTCTGCTGGACTCAGACCCAGGGCACCCAGAACTAGAAGACCCGGGTGTTGGCGATGAGGAACCTGGATTAGAGGAGGGAGAGGCCGCGATCGAGGACCCGGAGCTGGAGGCGATCAAAGCTCGGGTgcgagagatggaggaggaagcaGAAAAGCTGAAGGAGTTACAGAACGAGGTGGAGAAACAGATGAATCTTAGCCCTCCACCAGCCGGTCCCGTCATCATGTCCATCGAGGAGAAAATGGAAGCTGACGCGAGATCTATCTATGTTGGAAACGTTGATTACGGCGCCACGGCGGAGGAGCTAGAAGCCCACTTCCACGGTTGCGGCTCCGTCAACAGAGTCACCATCCTGTGTGACAAGTTCACAGGGCATCCCAAAGGGTTTGCCTATATCGAGTTTTCAGACAAGGAGTCTGTGAGGACGGCCATGGCATTGGACGAGTCTCTGTTCAGAGGAAGGCAGATTAAGGTGGGTGTGAAGAGAACAAACAGGCCAGGTATCAGCACCACAGACCGCGGGTTTCCTCGGGCCCGCTTCCGCTCACGAGGAGGGAACTTTAACCCGTCGCGCGCACGTTACTACAGTGGCTACACACCGCCCAGAGGCAGAGGACGGGCCTTCAGGTTTCAGGACCAGTGGAGGCTGACAACCCCTGCTCCGGTGGCCGCGGCGCCCCCCAATGTCTCggcagggtctctctctctcactgctcctgCTATGCACACTCACCCCATCCTTtctgtgtgggggggagggggccAGGGCGATCACAGGGCTACCGCAGGGGGCATTTACTACAACAAGCGTTGAgctgtcttacacacacacacacactaggcccACACACTTTGCAGACACTACA
>XM_036944044.1
GGTAGAAGGTGTGTCTACAATGCTTAATTGAGTAATAAGATTGCGAGTTTACGCCCGCAGTACGTAACTCCACCCCCGACTTCCATTTCTGAACTGAGGACACAGCACTCGCGAAGAGAATATTTTAGGTTATGTATATTTCTTAATGTAAATAAACTGTAACGTTAGGCTCTCCGCTGAAACtttgatatacacacacacaactgaagTAGCCTTTGCAATTGTAGTTGGAACCCGTTCGGACAGTGGCTAGAGTCGAAGCTGGCCTTTTATTTCACGTTTTTTTTCTTTCGCCCCACTCACTCTCCCGCTGTGTGAGTAGGGGCCTGTAACGTTGGTTTAAGCCACGAGGCGCGTCGGATAAACCGGAATTGGGAGATGGCGGAGTTCGGTAACGGAATGGACTCAGGGATGACGGAAGAATCTCTGCTGGACTCAGACCCAGGGCACCCAGAACTAGAAGACCCGGGTGTTGGCGATGAGGAACCTGGATTAGAGGAGGGAGAGGCCGCGATCGAGGACCCGGAGCTGGAGGCGATCAAAGCTCGGGTgcgagagatggaggaggaagcaGAAAAGCTGAAGGAGTTACAGAACGAGGTGGAGAAACAGATGAATCTTAGCCCTCCACCAGCCGGTCCCGTCATCATGTCCATCGAGGAGAAAATGGAAGCTGACGCGAGATCTATCTATGTTGGAAACGTTGATTACGGCGCCACGGCGGAGGAGCTAGAAGCCCACTTCCACGGTTGCGGCTCCGTCAACAGAGTCACCATCCTGTGTGACAAGTTCACAGGGCATCCCAAAGGGTTTGCCTATATCGAGTTTTCAGACAAGGAGTCTGTGAGGACGGCCATGGCATTGGACGAGTCTCTGTTCAGAGGAAGGCAGATTAAGGTGGGTGTGAAGAGAACAAACAGGCCAGGTATCAGCACCACAGACCGCGGGTTTCCTCGGGCCCGCTTCCGCTCACGAGGAGGGAACTTTAACCCGTCGCGCGCACGTTACTACAGTGGCTACACACCGCCCAGAGGCAGAGGACGGGCCTTCAGGTTTCAGGACCAGTGGAGGCTGACAACCCCTGCTCCGGTGGCCGCGGCGCCCCCCAATGTCTCggcagggtctctctctctcactgctcctgCTATGCACACTCACCCCATCCTTtctgtgtgggggggagggggccAGGGCGATCACAGGGCTACCGCAGGGGGCATTTACTACAACAAGCGTTGAgctgtcttacacacacacacacactaggcccACACACTTTGCAGACACTACA
>XM_036944045.1
GGTAGAAGGTGTGTCTACAATGCTTAATTGAGTAATAAGATTGCGAGTTTACGCCCGCAGTACGTAACTCCACCCCCGACTTCCATTTCTGAACTGAGGACACAGCACTCGCGAAGAGAATATTTTAGGTTATGTATATTTCTTAATGTAAATAAACTGTAACGTTAGGCTCTCCGCTGAAACtttgatatacacacacacaactgaagTAGCCTTTGCAATTGTAGTTGGAACCCGTTCGGACAGTGGCTAGAGTCGAAGCTGGCCTTTTATTTCACGTTTTTTTTTCTTTCGCCCCACTCACTCTCCCGCTGTGTGAGTAGGGGCCTGTAACGTTGGTTTAAGCCACGAGGCGCGTCGGATAAACCGGAATTGGGAGATGGCGGAGTTCGGTAACGGAATGGACTCAGGGATGACGGAAGAATCTCTGCTGGACTCAGACCCAGGGCACCCAGAACTAGAAGACCCGGGTGTTGGCGATGAGGAACCTGGATTAGAGGAGGGAGAGGCCGCGATCGAGGACCCGGAGCTGGAGGCGATCAAAGCTCGGGTgcgagagatggaggaggaagcaGAAAAGCTGAAGGAGTTACAGAACGAGGTGGAGAAACAGATGAATCTTAGCCCTCCACCAGCCGGTCCCGTCATCATGTCCATCGAGGAGAAAATGGAAGCTGACGCGAGATCTATCTATGTTGGAAACGTTGATTACGGCGCCACGGCGGAGGAGCTAGAAGCCCACTTCCACGGTTGCGGCTCCGTCAACAGAGTCACCATCCTGTGTGACAAGTTCACAGGGCATCCCAAAGGGTTTGCCTATATCGAGTTTTCAGACAAGGAGTCTGTGAGGACGGCCATGGCATTGGACGAGTCTCTGTTCAGAGGAAGGCAGATTAAGGTGGGTGTGAAGAGAACAAACAGGCCAGGTATCAGCACCACAGACCGCGGGTTTCCTCGGGCCCGCTTCCGCTCACGAGGAGGGAACTTTAACCCGTCGCGCGCACGTTACTACAGTGGCTACACACCGCCCAGAGGCAGAGGACGGGCCTTCAGGTTTCAGGACCAGTGGAGGCTGACAACCCCTGCTCCGGTGGCCGCGGCGCCCCCCAATGTCTCggcagggtctctctctctcactgctcctgCTATGCACACTCACCCCATCCTTtctgtgtgggggggagggggccAGGGCGATCACAGGGCTACCGCAGGGGGCATTTACTACAACAAGCGTTGAgctgtcttacacacacacacacactaggcccACACACTTTGCAGACACTACA
>XM_036944046.1
GTCTACAATGCTTAATTGAGTAATAAGATTGCGAGTTTACGCCCGCAGTACGTAACTCCACCCCCGACTTCCATTTCTGAACTGAGGACACAGCACTCGCGAAGAGAATATTTTAGGTTATGTATATTTCTTAATGTAAATAAACTGTAACGTTAGGCTCTCCGCTGAAACtttgatatacacacacacaactgaagTAGCCTTTGCAATTGTAGTTGGAACCCGTTCGGACAGTGGCTAGAGTCGAAGCTGGCCTTTTATTTCACGTTTTAACTTTCCTAAGCGGCGGTTTCCGCCGTTTTTTTTCTTTCGCCCCACTCACTCTCCCGCTGTGTGAGTAGGGGCCTGTAACGTTGGTTTAAGCCACGAGGCGCGTCGGATAAACCGGAATTGGGAGATGGCGGAGTTCGGTAACGGAATGGACTCAGGGATGACGGAAGAATCTCTGCTGGACTCAGACCCAGGGCACCCAGAACTAGAAGACCCGGGTGTTGGCGATGAGGAACCTGGATTAGAGGAGGGAGAGGCCGCGATCGAGGACCCGGAGCTGGAGGCGATCAAAGCTCGGGTgcgagagatggaggaggaagcaGAAAAGCTGAAGGAGTTACAGAACGAGGTGGAGAAACAGATGAATCTTAGCCCTCCACCAGCCGGTCCCGTCATCATGTCCATCGAGGAGAAAATGGAAGCTGACGCGAGATCTATCTATGTTGGAAACGTTGATTACGGCGCCACGGCGGAGGAGCTAGAAGCCCACTTCCACGGTTGCGGCTCCGTCAACAGAGTCACCATCCTGTGTGACAAGTTCACAGGGCATCCCAAAGGGTTTGCCTATATCGAGTTTTCAGACAAGGAGTCTGTGAGGACGGCCATGGCATTGGACGAGTCTCTGTTCAGAGGAAGGCAGATTAAGGTGGGTGTGAAGAGAACAAACAGGCCAGGTATCAGCACCACAGACCGCGGGTTTCCTCGGGCCCGCTTCCGCTCACGAGGAGGGAACTTTAACCCGTCGCGCGCACGTTACTACAGTGGCTACACACCGCCCAGAGGCAGAGGACGGGCCTTCAGgGGCCGAGGGCGAACAACATCGTGGTATTCCCCTTACTAATACCCCCAAACACCCTTACTATCACCTCCTTGTCCCCATACAAAAAAAAGAATGAAAAAAGTCCCCCAATAAAGGAAGGAACCCTGAGaagaaaaaagacaaaaaaaaagacaaaaaatatatataaatatatcctGGACAGACAAACTGGCCGCAGTGTGCGattgtgtgtgagcgtgcgtgtgcGGAGTTGGTGCGGTCACCCTGGTAAGGTATATGATGGCCGTTGGGGAGATTTGGTGGCATTTCTTTTGAGAAGATGTTATCTCAGGCTGCAGATGTGTCTCCTTTGTCTGGGTGTGAGGGTCACAGCCAACACAGCCCCCAAATGCTTACATTTGAAAAGCAAACATCGAGGATAAGTCAATCTTTTTTGCTTTTTTTTATGTACCGTACATGTGAAACTTCCAATAGCAAAAATGTTAATTTTTTAGGTTGTGGTATTGGAGTTCTCATATTCCCTTGTCTCGCTGACCAGTTGCCACTTACCCTGTTCCATCCTTTAACTCATCACTTTTGTTACCATCTCCCTTTGGTTCCATCCCATGCTCTCTTGTTTTCAGTATCTGACAGCGATTGCCTTTCAGtgggtaaataaataaatgtaatctcATTTTAGCCCATGGCATTCACCCCAAGAAAGCATGGCCAGAGCTCTGCCAACTTTACTTTATTTTGTGGGTCTGGTACTTTTTCCCCCTCCTTGCACCCCTCTGCCTTTCTGTGCTGCTTCTCCTCCCATTTGTCCTTCACCTCATCTCCATGTCCTTCACCTCCTCTCCGTGtccctcttctttctccccctctcctctctctgtatattAGACCACTTCTTGTCGTTTCAGGTTTCAGGACCAGTGGAGGCTGACAACCCCTGCTCCGGTGGCCGCGGCGCCCCCCAATGTCTCggcagggtctctctctctcactgctcctgCTATGCACACTCACCCCATCCTTtctgtgtgggggggagggggccAGGGCGATCACAGGGCTACCGCAGGGGGCATTTACTACAACAAGCGTTGAgctgtcttacacacacacacacactaggcccACACACTTTGCAGACACTACACAACCAACCACCACACATATTTATAGAGTGAGTTAATGTCAAGATGACAGCAGCTGTTTTAGTTGGGAGAGTGAGAAAGATGGGACCAGAGAAGGGGCGGTGGGGGACCAGAGAAGGGGCGGAGGGGTAGGGGACCAGGGCCCTGGCCCCGTTTCGGACAGTGGCACAGGGGCTAAAGTAATTCATTAAAGAGTGGAGCTTTTATTTTAAGGGGGGTGGGTTTGTGTGGAGGGGATTGGTTTTTGGAAAAAGGAgtgggtttaaaaaaaaaaaactttagcttttttatttttaacccATAAGTCTgtaattagaaaaaaaaataaagactGTAAAAAAT
>XM_036944047.1
GCAGACACTGCGAGAGCTCACGGAGCTGGAGGCGATCAAAGCTCGGGTgcgagagatggaggaggaagcaGAAAAGCTGAAGGAGTTACAGAACGAGGTGGAGAAACAGATGAATCTTAGCCCTCCACCAGCCGGTCCCGTCATCATGTCCATCGAGGAGAAAATGGAAGCTGACGCGAGATCTATCTATGTTGGAAACGTTGATTACGGCGCCACGGCGGAGGAGCTAGAAGCCCACTTCCACGGTTGCGGCTCCGTCAACAGAGTCACCATCCTGTGTGACAAGTTCACAGGGCATCCCAAAGGGTTTGCCTATATCGAGTTTTCAGACAAGGAGTCTGTGAGGACGGCCATGGCATTGGACGAGTCTCTGTTCAGAGGAAGGCAGATTAAGGTGGGTGTGAAGAGAACAAACAGGCCAGGTATCAGCACCACAGACCGCGGGTTTCCTCGGGCCCGCTTCCGCTCACGAGGAGGGAACTTTAACCCGTCGCGCGCACGTTACTACAGTGGCTACACACCGCCCAGAGGCAGAGGACGGGCCTTCAGGTTTCAGGACCAGTGGAGGCTGACAACCCCTGCTCCGGTGGCCGCGGCGCCCCCCAATGTCTCggcagggtctctctctctcactgctcctgCTATGCACACTCACCCCATCCTTtctgtgtgggggggagggggccAGGGCGATCACAGGGCTACCGCAGGGGGCATTTACTACAACAAGCGTTGAgctgtcttacacacacacacacactaggcccACACACTTTGCAGACACTACA

Function

NR:

description
PREDICTED: polyadenylate-binding protein 2-B-like isoform X2

GO: NA

KEGG:

id description
K14396 PABPN1, PABP2; polyadenylate-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944043.1 False 1322 mRNA 0.54 7 20927320 20943349
XM_036944044.1 False 1291 mRNA 0.54 8 20927320 20943349
XM_036944045.1 False 1292 mRNA 0.54 8 20927320 20943349
XM_036944046.1 False 2535 mRNA 0.49 7 20927332 20943689
XM_036944047.1 True 788 mRNA 0.57 7 20928239 20943349

Neighbor

gene id symbol gene type direction distance location
zfhx2 zfhx2 coding upstream 7057 20906870 ~ 20920263 (+)
LOC110489770 psme1 coding upstream 48087 20874867 ~ 20879233 (+)
LOC110490943 LOC106590259 coding upstream 111810 20812409 ~ 20815510 (+)
LOC110490942 NA coding upstream 122338 20801241 ~ 20804982 (+)
nanog LOC106590258 coding upstream 132284 20792087 ~ 20795036 (+)
cebp1 LOC106590243 coding downstream 14726 20958415 ~ 20960083 (+)
slc22a17 slc22a17 coding downstream 28115 20971804 ~ 20983450 (+)
LOC100136149 LOC100136486 coding downstream 86968 21030657 ~ 21046564 (+)
LOC110489782 LOC106590268 coding downstream 111969 21055658 ~ 21074100 (+)
LOC110490945 LOC106589989 coding downstream 140701 21084390 ~ 21092435 (+)
G1267965 NA non-coding upstream 22801 20904265 ~ 20904519 (+)
G1267962 NA non-coding upstream 24613 20902493 ~ 20902707 (+)
G1267867 NA non-coding upstream 148822 20777986 ~ 20778498 (+)
G1267877 NA non-coding upstream 186480 20738895 ~ 20740840 (+)
G1267986 NA non-coding downstream 25593 20969282 ~ 20969935 (+)
G1268075 NA non-coding downstream 228273 21171962 ~ 21172222 (+)
G1268081 NA non-coding downstream 311572 21255261 ~ 21257850 (+)
G1268151 NA non-coding downstream 343942 21287631 ~ 21289238 (+)
G1267949 pck2 other upstream 85922 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 1247215 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 2064809 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 5033156 15885437 ~ 15895996 (+)
G1261980 NA other upstream 5190903 15735930 ~ 15736417 (+)
slc12a7b LOC106590280 other downstream 842532 21729755 ~ 21794253 (+)
LOC110489812 rdh12 other downstream 2189170 23132828 ~ 23146739 (+)
G1270643 NA other downstream 2433619 23377308 ~ 23377560 (+)
G1270652 NA other downstream 2462971 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 2502149 23445838 ~ 23451494 (+)

Expression


Co-expression Network