LOC110489781


Basic Information

Item Value
gene id LOC110489781
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21018809 ~ 21037502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468621.2
GAAGTCAGCATACAGGATTCTGTTGGGGAAGCCCTTTCTGCAGATCCTGATGCCTTCCAGCACACCGTTACAGCGCAGCTGGTGCATGACCAGAGGATTCTCCATGGCCCCAGGAGTCTTGGTCTCATTGGGGATGATGCAACGCACAAAGTGGGGATGCAGGATGCCTCTTGCATTGGGTGAATTTCTGTCAGGGACAGCAAGCATGACCACACACAAGAGAGATGCTGATTCCTTTTGCTTTTAAGTTCCTTCTTCCCTCAACATCTGCACATCAGCCCCAACCAGGAGGCTCCAACCAAAAAATTATTAAAAATGTGGGCCCAGTGTACACTTGTAGATCACCGTCAATGTAGTCTCAggaaagtgttttctttccacagGGACCACAGAAGCATCTGAACAGGTGATGTATCGTTATTCTGAAAGGTATATTTGACCTCACTTCAAAAATATTAAGAAGGAATACAATCTGATACTTTTATAATAACACTACTACTCATAACCATTTTATGGCCAATTCACTATTCTAGGTCATTCTTGGAGTTGCCCCAACCTCCGGTCAATAACAGATTCTGCACGCAGCTCTTTACTGTGTAGAACTTTTGCATTGTGTAGAATTTTGCATTGTATGGACTTCTTGTTACATGCTTTATTTGATATAGAAAAACATTTAGTCTCTAGTGTAGCATTGCTAAGCAAGTGCACCTCTTGTTCTGAATGTACACTGCCTtcactatattattattattattattgcgtTCTCTAACTGGTTAGCATTACTCAAATTGATTTCAACAGAATATTGTCATAGAATAATGTTGTCATATGTATTCAAGGCTGTTAACAAGACACTGTTTGAATACAGTGGTCTAAAATGTAAGTACACTTCGGATGATGCAGATACGGAGGCTAAATTGTAATGACACGAAAAGGGTTACTGTTCAAGACAATGTATAGATACGGTCACACCTTTACCATTGTTGATGGCAAGAATTTCCCTCCCTCATATTCAGTGTCATCTTTGTTTTGTATATACAATTGGTAAATAACCCAATTAAATTTGAGACACACTGTAACTATTACTCACAATGTTATCCAAACTTAAACGAGGTGTTAAATGTTTGTCTTTTACTATGATACCATTTGACGTAtgttatctgtatttttttaaattaaaatcagTGTTTTTTTATATGATTGTGTTAAATAATAGTGCATTTTATTCTTCCAAAATGTCTAGAAATCCTATTCATAAGGGCATCAACACCAACCTTGATATCTATACCAGACGTGAAAAACCTTTGGCACAAAAGGTAACATATTACAAGCAATATACAGAGATGCAATTTAAATGTACTTTATTATTTATTCTGCTCAGTAACATTTAGAAAAACTAAAGCAATAAAGTCAGGAGATTTTCAGAAAAATCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468621.2 True 1434 mRNA 0.37 3 21018809 21037502

Neighbor

gene id symbol gene type direction distance location
LOC110489780 NA coding downstream 11537 21002118 ~ 21007272 (-)
ngdn ngdn coding downstream 64002 20948900 ~ 20954807 (-)
thtpa NA coding downstream 112333 20904229 ~ 20906476 (-)
dcaf11 dcaf11 coding downstream 116853 20884973 ~ 20901956 (-)
LOC110490944 NA coding downstream 138423 20879486 ~ 20880386 (-)
LOC110489787 LOC106579666 coding upstream 137091 21174593 ~ 21296726 (-)
kcnh2b LOC106590277 coding upstream 274717 21312219 ~ 21614730 (-)
scospondin sspo coding upstream 579917 21617419 ~ 21680364 (-)
LOC110489796 LOC106590244 coding upstream 816198 21853700 ~ 21864113 (-)
LOC110489804 LOC106590285 coding upstream 1177969 22215471 ~ 22311271 (-)
G1268618 LOC106579614 non-coding downstream 32131 20981780 ~ 20986678 (-)
G1268610 NA non-coding downstream 47166 20971336 ~ 20971643 (-)
G1268604 NA non-coding downstream 56484 20962089 ~ 20962325 (-)
G1268570 NA non-coding downstream 137009 20881451 ~ 20881800 (-)
G1268568 NA non-coding downstream 144228 20874361 ~ 20874581 (-)
G1268763 NA non-coding upstream 190402 21227904 ~ 21228745 (-)
G1268764 NA non-coding upstream 196975 21234477 ~ 21234903 (-)
G1268771 NA non-coding upstream 208371 21245873 ~ 21246537 (-)
G1268772 NA non-coding upstream 210515 21248017 ~ 21249031 (-)
G1268555 LOC106590243 other downstream 58720 20958372 ~ 20960089 (-)
G1267452 NA other downstream 728136 20290350 ~ 20290673 (-)
G1267414 NA other downstream 750321 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 1565039 19435018 ~ 19453770 (-)
G1266471 NA other downstream 1909452 19108559 ~ 19109357 (-)
G1269265 NA other upstream 765185 21802687 ~ 21803352 (-)
G1271421 NA other upstream 2675853 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 5008746 26046058 ~ 26048599 (-)
G1275015 NA other upstream 5474023 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 5517466 26554968 ~ 26562033 (-)

Expression


Co-expression Network