LOC110490945 (LOC106589989)


Basic Information

Item Value
gene id LOC110490945
gene name LOC106589989
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21084390 ~ 21092435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110490945
ATGGTTACTCACGGCTGGCGAATTCTAGGAGTTAAAGACCTCCCAGGGAACCCACGTGCCTTGGTGAGGGAAGAGATGGTCTTAGCCTGTGTGGGAGCAGTAGAGATGGCCTGGCAGTCTGTTAATCTATGGAGACAAAGGATGACAGGAGAGAAGAGGAAGCTGGAGGATGAGTGCTCAGAACTCAAGAAGGACATTGATGATCTGGAGCTCACTCTGGCTAAAGTGGAGAAGGAAAAGCATGCCACAGAGAACAAGTTTGGAGGGAAGAGTAACGACACTGCTGTGCTGGAGGCTCATCAGCAAACTCTGGATGACCTGCAGAGTGAGGAGGACAAAGTCAACCCGCTGACCAAGGCCAAAGCCAAACTGGAACAGCAAGTTGATGATACAAACTTGGAGAAAATGTGCCGCACTCTAGAGGACCAGATGAGTGAATACAGGACGAAAGCTGAGGAAGGACAGCGATCCATCAATGATTTTACCATGCAGAAAGCAAAGCTTCAAAATGAGAATGATGAACTTGCTAGACAGTTGGAGGAGAAGGACTCTCTGATCTCTCAACTGACCAGAGGTAAGCAGTCCAACGTTCAGCAGATTGAAGACCTCAAGTGACAACTGGAGGAAGAAGTCAAAGTATTGAataatttaaaaaatgtcctTACCAGGCCAAGAATGCTGTTGAGGGAGCAGtatgaggaggagcaggaggccaAGGCTGAGCTGCAGTGCGACATGTCCAAGGCTAATGCTTAGGTGGCTCAGTGGAGAACCAAGTATGAAACTGATGACATCCAGAAGACTGAGGAGCTTGAGGACGCAAAGAAAAAGCTGGCTCAGCGTCTGCAGGATGCAGAGGAAGCTGTGGAAGCTGTAAATGCTAAATGTTCATCCCTAGAGAAGACTAAACACAGACTCCAGAATGAGATTGAAGATCTCATGGTAGATGTGGAGAGATCTAATGCAGCTGCTGCCTCTCTGGACAAGAAGCAACTAAATAAATTATTGGATACGCAAGTCCTGGATGAGTGGAAGCAGAAGTTTGAGGAGTCTCAGACTGAGCTGGAGAGCTCCCAGAAAGAGGCCAGATCTCTCAGCACTGAGCTCTTCAAACTCAAGAACTCCCATGAGGAGTTTCTGGATCACCTGCAGACCATGAAGACCGAGAACACAGCATCAGCATTATTGATGTCAATTAAAGATGAAATTTCTGATCTGACTGAGCAACTTGGTGAGGGAGGAAATCGCATCCAAGAACTGGAGAAAGTCCATAACCAGCTGGAGCAGCAGAAGGCTGAGCAACACTCTGCTCTAGAGGAAGCTGAAGGCTCCCTGGATCATGAGGAGGGCAAAATCCTGAGAGCTCAGCTGGAGTTCAGCCAGGTGAAAGCTGACATTGAACGGAAGCTGGTGGAGAAGGATGAGGAAATGGAGATGAATAAGAGGAACCAGCAGAGAGTTGTGGATACCCTGCAAAGATCCCTGGAGTCAGAGACTCGCAGCAGGAATGAAGCTCTCAGgctgaagaagaagatggagggagatctCAATGAGATGGAGATCCAGCTCAGCCAGGCCAACAGGCAGGCATCCGAGGCCCAGGAGCAACCAAAGGGTCCCCATTCCCATCTGAAGGATTCTCAACTGCAGCTGGATGATGCTCTTCGTGTCAGTGATGACCTGAAGGAGAACATTGCCATTGTGGAGAGACGTAACAACCTGATGCAGGCTGAACTGGATGAGCTGAGAGCCCtggtggagcagactgagagagGCCGCAAACTGGCTGAGCAGGAACTGCTGGATGTTAGTGAGAAGGTTAAATTAAAAGTAATTTGTCAAATATATGTGAGGAACTCCAGCCTGTTAAGCCAGAAGAAAAAGCTAGAGGGCGACACATCCCAGCTTCAGAATGAAGTGGAGGAGGCTGTGCAGGAGTGTAGAAATGCAGAGGAAAAGGCCAAGAAGGCCATTACTGATGCTGCCATGATGGCAAaggagctgaagaaggagcaggACCCCTCACCTGGAGCGCATGAAAAAGAACATGGAGCAGACCATCAAGGACCTGCAGCACCGCCTGGATGAAGCTGAACAAATCGCCATGAAGGGGGGCAAGAAGCAGATCCAGAAGCTGGAGGCCAGAGTAATAAGGGAGCTAGAGAGTGAAGTGGAAATGGAGTAAAGGAGGGGCAGTGATTCTGTGAAAGGAGTCCGTAAATATGAGAGACGCATCAAGGAGCtttgtGTGCAGACTGAGGAAGACCGTAAGAAACTGAGCTATATATAG

Function

NR:

description
myosin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110490945 True 2290 mRNA 0.49 15 21084390 21092435

Neighbor

gene id symbol gene type direction distance location
LOC110489782 LOC106590268 coding upstream 10290 21055658 ~ 21074100 (+)
LOC100136149 LOC100136486 coding upstream 37826 21030657 ~ 21046564 (+)
slc22a17 slc22a17 coding upstream 100940 20971804 ~ 20983450 (+)
cebp1 LOC106590243 coding upstream 124307 20958415 ~ 20960083 (+)
pabpn1 LOC106579615 coding upstream 140701 20927320 ~ 20943689 (+)
LOC110489785 LOC106590267 coding downstream 15339 21107774 ~ 21130305 (+)
LOC110489784 LOC106590267 coding downstream 53082 21145517 ~ 21161815 (+)
LOC110489799 NA coding downstream 555702 21648137 ~ 21649966 (+)
aoc1 LOC106590278 coding downstream 615301 21707736 ~ 21713134 (+)
slc12a7b LOC106590280 coding downstream 637320 21729755 ~ 21794253 (+)
G1267986 NA non-coding upstream 114455 20969282 ~ 20969935 (+)
G1267965 NA non-coding upstream 179871 20904265 ~ 20904519 (+)
G1267962 NA non-coding upstream 181683 20902493 ~ 20902707 (+)
LOC110490942 NA non-coding upstream 279628 20801241 ~ 20804982 (+)
G1268075 NA non-coding downstream 79527 21171962 ~ 21172222 (+)
G1268081 NA non-coding downstream 162826 21255261 ~ 21257850 (+)
G1268151 NA non-coding downstream 195196 21287631 ~ 21289238 (+)
G1268178 NA non-coding downstream 238641 21331076 ~ 21331425 (+)
G1268212 NA non-coding downstream 282451 21374886 ~ 21376176 (+)
G1267949 pck2 other upstream 242992 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 1404285 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 2221879 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 5190226 15885437 ~ 15895996 (+)
G1261980 NA other upstream 5347973 15735930 ~ 15736417 (+)
LOC110489812 rdh12 other downstream 2040424 23132828 ~ 23146739 (+)
G1270643 NA other downstream 2284873 23377308 ~ 23377560 (+)
G1270652 NA other downstream 2314225 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 2353403 23445838 ~ 23451494 (+)

Expression


Co-expression Network