si:ch211-276f18.2 (gfod1)


Basic Information

Item Value
gene id si:ch211-276f18.2
gene name gfod1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21804152 ~ 21844069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562724.2
aattgccgcggcttttgtggagtgatgggtaactgttgttgacgtgtgcagagggtccctggttcaagcccgggtatgggcgaggagacggtttaaagttatactgttacaaatACAGCCATCTCGCTTTTCATTTGAACCATATTTTTATACGTCGCttgtttgtatcaattgcaaagacattggtAACGTTGTATTTGTTGTAGGCAACTTTGTTTTGAAGTTATCGGTGGTCACAGTGAGACGGATACACCGTGTGAGTTTAGCAGAGATCTTCGGTCTACAAATTGAAGCGGTAGGACAAAATAAAACACGACGCAtttagctgttctacgagtggtctgaggcaggtgttagatTACGAGAATTTTCAAATGCAACGTTATCATAACGATGGTTTTGGTTAACAGCTCGGAGATTTAACGATACTCCTAAGGTTCTAACGATGATCTTAGCCGTAAAATGCTTTTTGGAGACCAGGCCCTGGTCTTTAATAAACTATACTCCGTTATTGCACCTGCTGCGACTATGATGGGCGTCGAAATTGAATCACTTCATACCAGGAGCGAGAGGGTTAAAACTGGGAGGGGATCACTCGCCGGAGCCTGACGTATCCAGCACAGTCATTGCAGAACTGGGTTGCAACGTTATTAAAAGCAGCATAATACCGCTGGATCATCGGCGTTGCATGTATTTAAATACAGGCATCCTCCCAGGCCTATTGAAGGCGACTGGAATGCTTTTTCACACCTCTACAACGTTCAGGAAATTCGGACTTATTTTCTTGGTTTCTATATCTGTACAGGAGGGCGTTGCAGGAAAGACGAAAGTGACATGCCCTTCATTCGTAGCCGGACGCGGTTAATTCAGAATGGTGCATTTTAATTTGTGTATCTAGAATACGCGGATTTAGGTATTAATTGTTGTGATAACTGCGGATACGACAATATCTATTACAAATCGATCAAAACGGATGCTAAAATGCGAGGTGCCAGGTCGATTTGAGCGGGTGGATGGCCAATCTGATGTTAACAATTGCGTTTCTCCCCGCGTCTGCCGCGTTGCTATGCTGTGAAGCAAGTCGGGAAGACCGGGCACTCGAGCCATGCTTCCCGGGGTCGGCGTGTTTGGCACCAGCTTGACCGCGCGTGTGATTATCCCTCTTCTGAAGAACGAAGGATTCGCCGTCAAGGCTCTATGGGGACGGACTCAGGAGGAAGCAGAGGAGTTGGCCAAGGAAATGAATGTACCGTTTTATACCAATAGAATCGACGACGTTTTGCTGCATCAGGATGTGGATTTGGTGTGCATTAACCTGCCTCCACCTTTGACGCGGCAGATTGCTGTCAAAACATTAGGTATCGGTAAGAATGTGATCTGTGACCGAACCGCCACCCCACTGGATGCCTTTCGCATGATGTCGGCCGCCCAGTACTACCCCAAGCTGCTGAGCATCATGGGAAACGTACTGCGCTTCCTTCCCGCCTTCGTACGCATGAAGGAGCTAGTGGAGGAGGGCTACGTGGGGGAGCTGCTGGTCTGCGAGGCCCAGGTCCACAGCGGCAGCCTGTTGGGTAAGAAGTACAACTGGAGCTGTGACGACCTGATGGGCGGTGGGGGGCTGCACTCGGTAGGCAGCTACATCATTGACCTGCTCACCTTTCTCACGGGCCAGCGGGCGGCCAAGGTGCACGGCTTCCTCAAGACTTTCGTCAAGCAGACGGAGCACATCTGCGGCATCCGACAGATCACCAGTGACGACTTCTGCACCTTCCAGATGGTGCTGGAGGGCGGCGCCTGCTGCACCGTCACACTCAACTTCAACGTGCCTGGTGACTTCCGCCAGGAGGTGATCGTGGTGGGCACAGTGGGCCGGCTGACGGTCAGCGGCACGGACCTGTACGGCCAGAAGAACACCATGGAGGGAGGGCCGGAGCTActtctgaaagacagcacccctCTGGAGAAGGCCTCCCTACCGGAGAAGGCTTTCAGTGACATCCCTTCGCCCTACCTGACAGGAACCATCCGTATGGTGCAGGCGGTGCGTCAGGCCTTTGAGGACCAGGACGACCGGCGCACGTGGGATGAAAGGCCGCTGACTATGGCGGCCACATTTGAGGACTGCCTGTACGCACTTTGCGTGGTGGACAGCATCAAGAAGTCCAACCAGTGCGGCGAGTGGCAGAACATTGAGGTGATGAAAGAGGAGCCCGAGGTAAGCCCGGCGTACCTTATCAGCGAGGCCATGCGGCGCAGCAGGATGTCGCTCTACTGCTAGCACTGGCACCTAAATGGCTGTCTGGTGCTAGAGACTGGGGGTGAGAGAGCTGTCACTGTGCCCTCATTGGTTCGCTAAAAAAAAAGATGTGAACAGTGATGAACTCTCTCCAATCTCATTGTCCTCTCTTCTGCATGATCTATTCTGGAATCACTACGCCGTGCATCGTGACTCTGAGAAAGTGGAGGAATAAAGAGCACCTCCAAAAATAAAAAGGCGTTGCTATGGATGCTACACTCGGGACAACAGTGGTTTAACTGTACCTCTAGAGAGGTGAATGTTTAATCCCCAGGGGGCTTCGGACcctgtctctgtgtatgtctgcTGTGTGTGAAACCAGAGAAGAAAAACGCAGCGAAATCAATTGTTTGTCTGGTAGGGCTTTTAGTGAGGTCCACTCCTCCGGTTAAGTATGCAATAAATCCAATCAGAGCTCCAGGCTAGTGGAATTAAGTCATCCtaagcaaaaaaaaaagtgtgatgGGTCCACACTCATTCGCACTCAGAATTATGTCATCCTGCCTGAATCAAGGGAATGCCTTTTTTGCCTGCTTCTCGTTTTTGTAGTAACGTCCATATGCAATAGACCGACACATAATCTGTGGATGGTGGTGCAATCCCATGCTATGCTGTGAGTAAAACCTAGGCACATGTTTTCTATCCCCATGTTTTCAATCTCAAGGGCATGCCTGTTGCCAAGCTAATATCCTTAGCTTAGCCAGCTAGGTTAGCGGTGCATGCGATAAAGCTTCTTACACAACAGCAACGATGTAGAGTGAAACAATCAGTAATAGTGTCCCTCTGGGATAGTGCATGAATGGGACACTTCCACGCATGAAACATTCCCATCTGCTTGTAAAGGCTAGTGTTTTGTGACTCTTATAGTTTGTGTGAATATGTAGCTTAGTACTACTAACAGAAGGGCAAGTAGAACAtggcctatttttttttttttttttttgagaagaCCTCTGGTTTTCACCTCATCACTATCCACATCACTATCCACACAGGTTACAAGAGATAATGGTAGTACAGTAGCATAACTTCACGAAGCCAAAACATTTTTGTAATTTATTCAAGCTCGATCTTATTGTTTCCCCAATGTTGATTGTGTTCTCAAATGATGCTACTGTATATCACCATCTGCATTTGCCTACTTTTCCACGGTCTTGTATAATACAAAATAGTGAATATGGTTTAAAATGTGTCAtgatataaatgtactgtatgtatgttatTTGGTTTTAAACTATCTGCAAAAGACAGGAACTGGAACATGTTTTGATACACACACTGTTCAGtataaaattatttatttttaattttggaCTGATTTCGTACTGTGTCGGGAGAAGAAGTCTAGTTCGTGGGCGACAGTTGAGGTAAGAGAGGCCTTTTAGTATTCAGTTTCTCTGTGTGTTGGTCCATACTGTGGGATGTCTGAAGACAATGACTACTTTGGTTGGAGTATATAGACATTTTTTAATCATGTGATCCTAATTTGTAATAAATGTTGATAGGTGCAGCCATTTTAAGATTTGTAGCTATTTAATCGTTATCTGTCCAGTCGGCCATTTTGCCCTGTATTCATGTTTCATCGATGTGCTATATTGTGTTTGACAGTGGGCTTTGGAACGGTTCATATTTTTCTGACCATGCTCCAGTTAGTTTATTTGGCATTTGTGTTGtgcaagttatttttttcagtaGCTTTTCAGCCAACAAGACAAGCTTCTCACATGCCCGCTGACCTTTCCCAAGTTCTGTAAATACTATCTCACTCTGATGGGTGACCATGATGTGTTCTGCATAGAAACATGATAagatgtcacctgttatatcATTGCAGATCATAATAGCTTATCAATACTGTAGACTTTCCCCTTTGTCCACTGAGGACCTTTATACCATAAACATGCCTTGATCTTTTCAATGAAACCTGGAAAAAATTATACTGGAATAAACTCTCCAAAGTTGCACACTATGGTATAAGAACCCCCCCGGTTACTTGATGGACTTTGCCATTTAAAGGATGGAGATATAGAGCAACGTCTAAAGATGTGCTCTTTCCAACTCTCTCTGTTAGTCCCCTATATTCCTATCCCAGGTCAATGGCCTTGTTTCAAACAATGCTACTCTAAAGCTGCACCCAGAGAACAGGAGAAGAAGTCCCCCGTTGAGGCCTTATAGGGAGGACGTAGGAACCGTGGTTTAGTCCCCAGTCTTTCAGTCTGGATAAAACTCTATAGCTTTACATATATGACAGGAAAGAAATAGGGACTAAATTAAATCAAACACTTGAAGAAAACCCTTGTGAACACTTCACATTATAACATATGCTGAATCAAACTTATTATCATGGAATATCAATGTAGGGGAGAAAGGATCAATGCAAAGTAGAGAGGAGTCCCTTTGCCGATTTGATCCAGCACCCATGTGTATTTAGGCTTAATCCTACATCTTGCTACGGTGCTGTAGAGCAGTCctcctcaaacctctcctctggaaCCCCCAAATGTTTTCCTGATTCACCTCGTCAAGGGTTGTGTTTCTCTGCCCAGACATTGAGGACGCATGCCAGTTATTACAATGCCTGGATGGGTATTTTGCGTATCAGATAACCACATATGTTAGAGCAATCTGGTGCCCGACGGCACAGTTGATGAGGTGGCACGTGACCATTGGTTGAGTCATGCAACTTCTGACCAGGGGAATGCAACCAAGGGCTTGACGATTAGTTGATAAGTTGAATCAGGTGGAATAGATCAAATACGTGGAATGGCTGgtggtccccgaggagaggtttgaggatcactgctctagaggcaCCTTACCATTTtcttctacactgaacaaaaatataaacgcaacaattgcaaggattttactgagttataattcatggaa

Function

symbol description
gfod1 Predicted to enable oxidoreductase activity. Is expressed in brain and spinal cord neural tube. Orthologous to human GFOD1 (glucose-fructose oxidoreductase domain containing 1).

NR:

description
glucose-fructose oxidoreductase domain-containing protein 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562724.2 True 5191 mRNA 0.46 2 21804152 21844069
Loading

Neighbor

gene id symbol gene type direction distance location
slc12a7b LOC106590280 coding upstream 9901 21729755 ~ 21794253 (+)
aoc1 LOC106590278 coding upstream 91018 21707736 ~ 21713134 (+)
LOC110489799 NA coding upstream 154186 21648137 ~ 21649966 (+)
LOC110489784 LOC106590267 coding upstream 642337 21145517 ~ 21161815 (+)
LOC110489785 LOC106590267 coding upstream 673847 21107774 ~ 21130305 (+)
LOC110489791 LOC106590282 coding downstream 65563 21909632 ~ 21991990 (+)
LOC110489805 LOC106590283 coding downstream 152749 21996818 ~ 22054060 (+)
tgfbr1b LOC106590284 coding downstream 217715 22061784 ~ 22125370 (+)
lancl2 lancl2 coding downstream 308761 22152830 ~ 22215450 (+)
LOC110489808 LOC106590291 coding downstream 1118743 22962812 ~ 23028566 (+)
G1269119 NA non-coding upstream 1050 21802820 ~ 21803102 (+)
G1269117 NA non-coding upstream 3742 21799863 ~ 21800410 (+)
G1269116 NA non-coding upstream 4374 21799553 ~ 21799778 (+)
G1269113 NA non-coding upstream 6344 21797520 ~ 21797808 (+)
G1269161 NA non-coding downstream 24090 21868159 ~ 21883333 (+)
G1269171 NA non-coding downstream 41011 21885080 ~ 21885399 (+)
G1269330 NA non-coding downstream 55913 21899982 ~ 21900235 (+)
G1269333 NA non-coding downstream 58532 21902601 ~ 21902802 (+)
G1269340 NA non-coding downstream 61891 21905960 ~ 21906546 (+)
G1267949 pck2 other upstream 962754 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 2124047 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 2941641 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 5909988 15885437 ~ 15895996 (+)
LOC110489812 rdh12 other downstream 1288790 23132828 ~ 23146739 (+)
G1270643 NA other downstream 1533239 23377308 ~ 23377560 (+)
G1270652 NA other downstream 1562591 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 1601769 23445838 ~ 23451494 (+)
LOC110489839 LOC106590236 other downstream 1822402 23666471 ~ 23836438 (+)

Expression

si:ch211-276f18.2(gfod1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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si:ch211-276f18.2(gfod1) Expression in each Bioproject

Bar chart with 21 bars.
si:ch211-276f18.2(gfod1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network