LOC110489796 (LOC106590244)


Basic Information

Item Value
gene id LOC110489796
gene name LOC106590244
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21853700 ~ 21864113 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562714.2
AACACTGACACGTTCATCTGGAAAATGTTTCTTTCATTGTAGGTCAAATTAATGAGGGAAAGGAGTGGCGCGCGTTCACCGGTATGATAATCGAAATGACAGAACACGCTTTGTGACGCGATGAATGTAAAGAACGTTGTTGACGTTCCTTCCAAATTGCTAACAGATGACTATCAACACGCTTGCCAAACGCCTCCTGTCCCCCTCCGTCCTCATGGCTGAAGAAATCAGGAGAATAGCTGCTCTTATTGAGAGAGACCAAGAGCTCATCACTTACATCAAGCACAAGTTTACCACCGACTTCAAAAAAGCGCACAGCTACTTACCTGAGAAGGTTGTCACCCGCAGTGACACAAAGTATGTCCTCATACAAAATGGCCAGGCCAAGAAGAACTatgacaggagacaggagatgcTCAGAAGAGGCCTTTTCTCCCCTGTTAACAAACCATACAAAACAGTGGGAATGCTTTCCTCTGACAACGTTGATCTCTTCTCAACCTGGTTAACGTCAGAGGATCAGGAGTCACTGAAGACACACTGGGACAAGAAGTTTGGCAAAAAGTCAGGAGGTGGAGTGATCTCCAGCAAATTCACTCAGGAGAAGGCtaaaaagGAGAACGTCACAGCCCCTCCAATGGAGAGCCAGACCCTGGATGGCTTCCTCCAGCTGAAGCACTACCTGAGGGAGATGGCCTCCATTAGACGTGCTCTCCACGCTGGACGCCCCCTCATATGTTGCCTCAGGGACCAGGATAAACAGTCATCGCTAATGACATCATGTGACCGAGCCATGTCAGCTGATAAAGAGACTGTGCCACCAACCCCCATGACCATGAACCAACAGGCACTGGacccagaggaagaggagaacctACAGAGGATACAGTACAGGAAGCAGAAGCTGTTCTCAGAGAAACTGCAGTGGATCTACATGGTCCTGTGTGGCATCTCTCACATGAGAAACAAAGACCTAAAGACACTGGTTCCTCTCAACAGCAACTATGTGAATGTCATCATGAAGGACACAGAGAAGACCAAAATCATCCTGAAGCAGTCACACAGCTACTACAACCCTCCAGTGAATGCCATCGGACGCCTGGTGTCTCTGGCCCCCGATGACCGTCACAACGGCACCCCTGACGTGTGGGACACCTTCATCGGTCACCAGGATGCCGCAGAGACCTCAAAGATGACAACCATCCGAACCACAGGATATAAAGCTCTGCAGTCTGGGCCCAGGCGTAAGGTTGGCCAGCGAGATCCAGACGGAGATGGAGACATACCCCCAtggctactactgctgctggatgAGAACACATCCCTAGAGAAGAAAACAGTCAAGCCTAGAGTAGACCAGTCAGCCATGCTGGAGAGAGCCAAGGTCCAATACCTGAATGTGAAGAAGGTTCTTAACATCCAGGTCAAGTCAGGAGTGTTTGAAAAGAAAAAGTACCGTGAGGAAAGGATGAGAACTCTTTTCGATGCTCTAATGGCTTCCAAGACCGATGCTGGTCTGTCTTCGCTCCTTGCCTCTCTGAAGAGTGAGCTGAAGGAGCCCAAATCCACCACTGGTCTCTGGTTTGCAACACTGCAGAGTGAGGCCACAGAACTGTCCGGAGACAGAGACCCCAAATATAACAGCATACTGCAGAAGATCTCAGCATTTCAAAGCTTCTCCAACAAAAGGGTCCCCTACTCCCAGcctaatgaacatgacccggTCTCTCATCTACCTCTGAAGGAGAAATTATGTCTCCTGGTCCTCTCCATGCCAGCCAATCAGCTGCTTCGACCAGCCATACAGGAAGCACTGCTCTTCCTCACCGAGAAAGTCCTGCTGCTGTTGCCGCGGCAACTCAAACAGTGGTACCAGTACCTGAAGCTGCCCTTCCCCACCAAGGAATCCTCCTCCTAAAAACAAATAATATCCTGATATCTTTACTTCACTGCCTGTCTACAATGTGGGCCTTGGACTGAGAAGCCTGGGCTCTTGGTGGTATAGCTGATGTTGAGGGCTCAGGAAAAGGCTTCATGAAATATGTTTGCTGGTTCTGTCAATAAAACACCTTAACATTTA
>XM_036944058.1
CAACACTGACACGTTCATCTGGAAAATGTTTCTTTCATTGTAGGTCAAATTAATGAGGGAAAGGAGTGGCGCGCGTTCACCGGTATGATAATCGAAATGACAGAACACGCTTTGTGACGCGATGAATGTAAAGAACGTTGTTGACGTTCCTTCCAAATTGCTAACAGATGACTATCAACACGCTTGCCAAACGCCTCCTGTCCCCCTCCGTCCTCATGGCTGAAGAAATCAGGAGAATAGCTGCTCTTATTGAGAGAGACCAAGAGCTCATCACTTACATCAAGCACAAGTTTACCACCGACTTCAAAAAAGCGCACAGCTACTTACCTGAGAAGGTTGTCACCCGCAGTGACACAAAGTATGTCCTCATACAAAATGGCCAGGCCAAGAAGAACTatgacaggagacaggagatgcTCAGAAGAGGCCTTTTCTCCCCTGTTAACAAACCATACAAAACAGTGGGAATGCTTTCCTCTGACAACGTTGATCTCTTCTCAACCTGGTTAACGTCAGAGGATCAGGAGTCACTGAAGACACACTGGGACAAGAAGTTTGGCAAAAAGTCAGGAGGTGGAGTGATCTCCAGCAAATTCACTCAGGAGAAGGCtaaaaagGAGAACGTCACAGCCCCTCCAATGGAGAGCCAGACCCTGGATGGCTTCCTCCAGCTGAAGCACTACCTGAGGGAGATGGCCTCCATTAGACGTGCTCTCCACGCTGGACGCCCCCTCATATGTTGCCTCAGGGACCAGAATTTTAGGACCACTTGCTGTAACACGAAGAATACATGTCTCTACTATGTTCTCATTGTAAAGGATAAACAGTCATCGCTAATGACATCATGTGACCGAGCCATGTCAGCTGATAAAGAGACTGTGCCACCAACCCCCATGACCATGAACCAACAGGCACTGGacccagaggaagaggagaacctACAGAGGATACAGTACAGGAAGCAGAAGCTGTTCTCAGAGAAACTGCAGTGGATCTACATGGTCCTGTGTGGCATCTCTCACATGAGAAACAAAGACCTAAAGACACTGGTTCCTCTCAACAGCAACTATGTGAATGTCATCATGAAGGACACAGAGAAGACCAAAATCATCCTGAAGCAGTCACACAGCTACTACAACCCTCCAGTGAATGCCATCGGACGCCTGGTGTCTCTGGCCCCCGATGACCGTCACAACGGCACCCCTGACGTGTGGGACACCTTCATCGGTCACCAGGATGCCGCAGAGACCTCAAAGATGACAACCATCCGAACCACAGGATATAAAGCTCTGCAGTCTGGGCCCAGGCGTAAGGTTGGCCAGCGAGATCCAGACGGAGATGGAGACATACCCCCAtggctactactgctgctggatgAGAACACATCCCTAGAGAAGAAAACAGTCAAGCCTAGAGTAGACCAGTCAGCCATGCTGGAGAGAGCCAAGGTCCAATACCTGAATGTGAAGAAGGTTCTTAACATCCAGGTCAAGTCAGGAGTGTTTGAAAAGAAAAAGTACCGTGAGGAAAGGATGAGAACTCTTTTCGATGCTCTAATGGCTTCCAAGACCGATGCTGGTCTGTCTTCGCTCCTTGCCTCTCTGAAGAGTGAGCTGAAGGAGCCCAAATCCACCACTGGTCTCTGGTTTGCAACACTGCAGAGTGAGGCCACAGAACTGTCCGGAGACAGAGACCCCAAATATAACAGCATACTGCAGAAGATCTCAGCATTTCAAAGCTTCTCCAACAAAAGGGTCCCCTACTCCCAGcctaatgaacatgacccggTCTCTCATCTACCTCTGAAGGAGAAATTATGTCTCCTGGTCCTCTCCATGCCAGCCAATCAGCTGCTTCGACCAGCCATACAGGAAGCACTGCTCTTCCTCACCGAGAAAGTCCTGCTGCTGTTGCCGCGGCAACTCAAACAGTGGTACCAGTACCTGAAGCTGCCCTTCCCCACCAAGGAATCCTCCTCCTAAAAACAAATAATATCCTGATATCTTTACTTCACTGCCTGTCTACAATGTGGGCCTTGGACTGAGAAGCCTGGGCTCTTGGTGGTATAGCTGATGTTGAGGGCTCAGGAAAAGGCTTCATGAAATATGTTTGCTGGTTCTGTCAATAAAACACCTTAACATTTA
>XM_036944059.1
CAACACTGACACGTTCATCTGGAAAATGTTTCTTTCATTGTAGGTCAAATTAATGAGGGAAAGGAGTGGCGCGCGTTCACCGGTATGATAATCGAAATGACAGAACACGCTTTGTGACGCGATGAATGTAAAGAACGTTGTTGACGTTCCTTCCAAATTGCTAACAGATGACTATCAACACGCTTGCCAAACGCCTCCTGTCCCCCTCCGTCCTCATGGCTGAAGAAATCAGGAGAATAGCTGCTCTTATTGAGAGAGACCAAGAGCTCATCACTTACATCAAGCACAAGTTTACCACCGACTTCAAAAAAGCGCACAGCTACTTACCTGAGAAGGTTGTCACCCGCAGTGACACAAAGTATGTCCTCATACAAAATGGCCAGGCCAAGAAGAACTatgacaggagacaggagatgcTCAGAAGAGGCCTTTTCTCCCCTGTTAACAAACCATACAAAACAGTGGGAATGCTTTCCTCTGACAACGTTGATCTCTTCTCAACCTGGTTAACGTCAGAGGATCAGGAGTCACTGAAGACACACTGGGACAAGAAGTTTGGCAAAAAGTCAGGAGGTGGAGTGATCTCCAGCAAATTCACTCAGGAGAAGGCtaaaaagGAGAACGTCACAGCCCCTCCAATGGAGAGCCAGACCCTGGATGGCTTCCTCCAGCTGAAGCACTACCTGAGGGAGATGGCCTCCATTAGACGTGCTCTCCACGCTGGACGCCCCCTCATATGTTGCCTCAGGGACCAGAATTTTAGGACCACTTGCTGTAACACGAAGAATACATGTCTCTACTATGTTCTCATTGTAAAGGATAAACAGTCATCGCTAATGACATCATGTGACCGAGCCATGTCAGCTGATAAAGAGACTGTGCCACCAACCCCCATGACCATGAACCAACAGGCACTGGacccagaggaagaggagaacctACAGAGGATACAGTACAGGAAGCAGAAGCTGTTCTCAGAGAAACTGCAGTGGATCTACATGGTCCTGTGTGGCATCTCTCACATGAGAAACAAAGACCTAAAGACACTGGTTCCTCTCAACAGCAACTATGTGAATGTCATCATGAAGGACACAGAGAAGACCAAAATCATCCTGAAGCAGTCACACAGCTACTACAACCCTCCAGTGAATGCCATCGGACGCCTGGTGTCTCTGGCCCCCGATGACCGTCACAACGGCACCCCTGACGTGTGGGACACCTTCATCGGTCACCAGGATGCCGCAGAGACCTCAAAGATGACAACCATCCGAACCACAGGATATAAAGCTCTGCAGTCTGGGCCCAGGCGTAAGGTTGGCCAGCGAGATCCAGACGGAGATGGAGACATACCCCCAtggctactactgctgctggatgAGAACACATCCCTAGAGAAGAAAACAGTCAAGCCTAGAGTAGACCAGTCAGCCATGCTGGAGAGAGCCAAGGTCCAATACCTGAATGTGAAGAAGGTTCTTAACATCCAGGTCAAGTCAGGAGTGTTTGAAAAGAAAAAGTACCGTGAGGAAAGGATGAGAACTCTTTTCGATGCTCTAATGGCTTCCAAGACCGATGCTGGTCTGTCTTCGCTCCTTGCCTCTCTGAAGAGTGAGCTGAAGGAGCCCAAATCCACCACTGGTCTCTGGTTTGCAACACTGCAGAGTGAGGCCACAGAACTGTCCGGAGACAGAGACCCCAAATATAACAGCATACTGCAGAAGATCTCAGCATTTCAAAGCTTCTCCAACAAAAGGGTCCCCTACTCCCAGGAGAAATTATGTCTCCTGGTCCTCTCCATGCCAGCCAATCAGCTGCTTCGACCAGCCATACAGGAAGCACTGCTCTTCCTCACCGAGAAAGTCCTGCTGCTGTTGCCGCGGCAACTCAAACAGTGGTACCAGTACCTGAAGCTGCCCTTCCCCACCAAGGAATCCTCCTCCTAAAAACAAATAATATCCTGATATCTTTACTTCACTGCCTGTCTACAATGTGGGCCTTGGACTGAGAAGCCTGGGCTCTTGGTGGTATAGCTGATGTTGAGGGCTCAGGAAAAGGCTTCATGAAATATGTTTGCTGGTTCTGTCAATAAAACACCTTAACATTTA

Function

NR:

description
uncharacterized protein LOC110489796 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562714.2 False 2080 mRNA 0.49 17 21853700 21864112
XM_036944058.1 False 2144 mRNA 0.49 17 21853700 21864113
XM_036944059.1 True 2105 mRNA 0.49 17 21853700 21864113

Neighbor

gene id symbol gene type direction distance location
scospondin sspo coding downstream 173336 21617419 ~ 21680364 (-)
kcnh2b LOC106590277 coding downstream 238970 21312219 ~ 21614730 (-)
LOC110489787 LOC106579666 coding downstream 556974 21174593 ~ 21296726 (-)
LOC110489781 NA coding downstream 816198 21018809 ~ 21037502 (-)
LOC110489780 NA coding downstream 846428 21002118 ~ 21007272 (-)
LOC110489804 LOC106590285 coding upstream 351358 22215471 ~ 22311271 (-)
LOC110489802 LOC106590287 coding upstream 448683 22312796 ~ 22359506 (-)
LOC110489790 LOC106590241 coding upstream 503418 22367531 ~ 22446695 (-)
LOC110489807 LOC106590288 coding upstream 780228 22644341 ~ 22676386 (-)
LOC118938910 NA coding upstream 931451 22795564 ~ 22796979 (-)
G1269264 NA non-coding downstream 53281 21799864 ~ 21800419 (-)
G1269256 LOC106590280 non-coding downstream 64862 21786522 ~ 21788838 (-)
G1269252 LOC106590280 non-coding downstream 75790 21776553 ~ 21777910 (-)
G1269193 sspo non-coding downstream 161502 21691814 ~ 21692198 (-)
G1269191 sspo non-coding downstream 162399 21689787 ~ 21691301 (-)
G1269331 NA non-coding upstream 35916 21900029 ~ 21900228 (-)
G1269337 NA non-coding upstream 39432 21903545 ~ 21904016 (-)
G1269387 LOC106590282 non-coding upstream 45713 21909826 ~ 21951219 (-)
G1269434 NA non-coding upstream 126733 21990846 ~ 21991885 (-)
G1269588 NA non-coding upstream 261597 22125710 ~ 22130051 (-)
G1269265 NA other downstream 50348 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 893611 20958372 ~ 20960089 (-)
G1267452 NA other downstream 1563027 20290350 ~ 20290673 (-)
G1267414 NA other downstream 1585212 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 2399930 19435018 ~ 19453770 (-)
G1271421 NA other upstream 1849242 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 4182135 26046058 ~ 26048599 (-)
G1275015 NA other upstream 4647412 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 4690855 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 4706165 26566351 ~ 26694581 (-)

Expression


Co-expression Network