LOC110489805 (LOC106590283)


Basic Information

Item Value
gene id LOC110489805
gene name LOC106590283
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 21996818 ~ 22054060 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944063.1
CCagttctccatctcctccactattCGGCCTGTATATGAGCGGATCACGAGAGAGAGCCGCATACGCTAATGTAGCCGACACAGAGGGTCTCATGGAGCTTGTCAAAGCGGCAGTGTTTTATTTGTCTTTTCGTTCACAATGCACTTTAGGATTTCAATAAGATGTATGTGTGTTTTGAGATAGTGACTTTTCTTCTCGCCTTCAACTTCTACGATTTGGTTCTTACTCAGGATTCGTCCTGCTGCCACCATGCTGCGGAACTCACACCATGTAGGGAAGCATGCGATCAGCTCGCCACCATAAAAAGTGAATCTCGTTTGAAGCACCTACTACAGCGATTACCAAGCTACTGCCCTGAGTCTATGAATGAGCTTTGGATTTGCATCAACTCCACACTACCTGGAGCGTCCAGGAAGTCTGATGGTTGGGTTGGCCTTGGCTGCTGTGAGCTGGCCATCTCGGCAGAGTGCCGCAGAGAGTGCAAGCAGGCATCATCCAAGAACGACATcacaaaaatatgcaaaaaagaCACAGAGAAACCACTCTACAGCTGTATCATCAAAAATGAGATGGGCTCGGTGTGCTGCAGCTACGCAGGGAGACACACCAACTGCAGAGAGTACTGCCAGGCTATCTTCCGGACAGACTCCTCCCCCACCGTCTCTCAAATCAAAGCTGTCAAGGAATACTGCCAGAGCATCAGCCCAGAGCTCATTGGCTGTGTGGGCAACTACACCAAGTCTTACCCTATTAGAAGCCCTATAGACAGCCTGTACTGCTGCGACCGGGCAGATGAGCCCCACTGCCAGGTGGCATGCCGGCGTATCCTTCGCACCATGACCACAGAGCATGAGATCATGGAGGGCCTGATCGATGAGTGCGGCAGCCAGCCACTGCCCCAGGACCCACTGTGGCAGTGCTTCCTGGGCAGCGCCCACCCCCCAACCAAGAGCGAGACGGAGACCTCCCCCACCGCCAAGATGGACGGCGCCAAGCTGCACTGCTGCTCCAAAGCCAATACCTCATTGTGCAGGGATATGTGTCAGGAGATCAGCACCAACTGGGGCACTCAGACATGGCAGGAGTTTGACCAGATGTGCGAATACAACCCTGTGGAGACGGATCTGATCACCTGTTTGGCCGACGTCAGGGAGCCCTGCCAGCTAGGCTGTAAGGACCTGGCCTACTGCACCAACTTCAACAACAGGCCCACTGAGCTGTTCCGTAGCTGTAACATCCAATCAGACCAGGGCGCCATGAACGACATCAAGCTGTGGTCCAATGGGACGATCAAGATGCCCTTTATGAACATCCCCGTCCTGGACATCAGGAAGTGTCGTCCGGAGATGTGGAAGGCTGTGGCCTGCGCCCTGCAGATCAAACCCTGCTACAGCAAGTCCCGCGGCAGCGTCATCTGCAAGTCGGACTGTGTAGACATCCTGAcacagtgtggtgaccacaaacGCTTCCACGAGGGACAGACAGCCGAGCGCATCTGTGAGATCCTGTCCCCCATAGACGACCCTGAACGCTGCATCCCCCTGGAGAGATATCTCACTCCTAGCTCCCTGGGTAACATCATTGAGGAGGTCATCCACCCCTGTAACCCCAACCCCTGTCTCAGCAACCACCTGTGTGAGGTGAACAGGAAGGGCTGTCAGCCAGGACAGGACTGCCTGCCCTACTTCTGTGTGCCTGgctgtAAACTGGGCGAAGCCTCAGAGTTCCTGGTCCACCTGGAAGCCCGTATCCAGGTGCCCATGCGTAATGGGCAGGCGGGTTGCTTCGAGGTGTGTACCTGTGGCCAGAGTGGAAGGCTGGAGAACTGTGCTGAGATGCCCTGCATAGACACCTCCAAGACTTGCATTGTTGGGGGACAAAGAAAAAACCATGGGACGTCCTTCAGGGTAGACTGCCACCCCTGTTCCTGCTTCGCTGGAGAGACCATCTGCTCCACCCGCCAGTGCCTCAGCACCGACAGCTCAGACGAGGACCGCCGCCGcttcactgGGCTCCCATGTGGCTGCCCTGACCGCTTCGTGCCAGTGTGTGCCCGTAATGGCCGCACCTACCCCAGTGCCTGTGTGGCCCGTTGCATGGGCTTCAAAGACAACCAGTTTGTGTTTGGCCACTGCCGCAGCAGCGACCCCTGTTCCCCCAACCCCTGCCAGAAGAACCAGAGGTGCATTCCCAGCCGTAGAGTGTGCCTTACAGACATGGTTGACTGCCACTGTCCCCAGTATGAGTGTGTTGGTCGTCCCTCCGGCTGTGGCAAGATTCACATGGACCTGGCCTGCGACACAGACAACGTGGAGCACCCCAACCTCTGTCAGCTCCTCCAGATGGACAAGACCCTGGCCTATATGGGCCACTGTCAGGATGCCTGTAAAAAGGCGCGGCCTGTGTGCGGCCACAACGGCGAGACGTACAACACAGTGTGCGAGGCCTACTCGGACCGCGTTGCCGTGGACTATCAGGGGCGGTGCCACGCCGTGGGGGCGGTGGCAGAGTTTGCCTCTGACTCAGGCTGTGACATGATCCCCTGCCCCGCCCTGTCCACCCCGGGTTGCATCCCTGTCACACCACCCGGTGCATGCTGTCCTCTGTGTGCGGGCATGCTGCAGATCCTGTGGAACAAGGAGCAGATTAACAACTTCGCTAAGTTGAACAGGAAGCAGCCAGTGACGGTCCATGACATCCTGAGGATCCTGCGTCTCCACATCTCCGTGCCGCAGTGTGACATCTTCGGCTACCTGAGCATCGACTCAGAGATCATCGTCCTCATCGTCCCAGTGGACCAGCAACCCACCCCACTGCAGATTGAAGCCTGCAGCATGGAGGCGGAGAAGATTGACTCGCTCATCAACTACGGCAGCCCCACCCTGGTCtcccatgttcctctgtctgcctTCCTCACCTCCGAGGTCTCCATCTCCACCATCAGGTCCGCGGGCCACGCCAGCTCAACGCCCTCCTCCCTGCCCATCTTCTTCTGCCTCGCCCTGGGCCTCCTCCTCACTTTGGCACCAGGCCTATCCGAGGCCACGCTAGCCTCTGCTAGCCAGCCAGGCCCCGCTGGCAGGAGGCTGGGTGTGTTGTGGAGTATTCTGACCCCTTCTCGGGTCATTGCCTGACAGGAAGCATCAGCCTGTAAAAGCCTTGACAATCAATCCCATTAACTCTACTGCACCAGCGTCAACACAATCATGGACGAGAAGCTATGAGATGAATCCTAATTGAACAAGAGAAGCGGAGACACAATCACATTCCAGCTTTGGTTCCACAGAGCTCTATATATATCGTTATAAGGAAGATGAGTTTTATCACACAGGGTTTTGTATCTGTTTTATTCTGCAACAgaagctctctcctcctctaaagCTGTGGAGTGGGGAGTTTGTGTGGGTTTTTGCCTGCGTGCTTGTGTTTATGCGTATGTGTacgcacacgtgtgtgtgtgtgtgtgtgcgtgacacagagagagagaggaaccaggtggTTAAGTCTCAGAGGGGGAGTAGGGTCTAGATGTCAGACAGGTGCGCTCCCAAACACTGACATTTGTCCCAGATAATCTCAGGGGTGTAATTaccctcctccgcctcctccccctctcctcccctttctcccacTCCCATTTTACATTTCTACTATTGTAAATAAAGAGCGAGTGGGGAGGTGCTGACTGAGACAGTAATACTGGAACGTGAAACAGGTCAAAGGCAAGCAAGCATTCCCGCTCCGTAGGCTGAAAGACACAAAAGGGATTCTTGTTGTTCCTCTAGTGTAGATAAGATATCAAATAAGGAGGAACGACAGccatgtttttaatgaaaatgaCAATCATCACTTTACCCATGATACACATGGGTAGGAACAAAAAAAATAGCAACAACATGCTTTGCATATAGTTCCTATGTGAAATAAATGCAATAACTTTATAATGTTGATAATAATTATTCCGAAACTATTCCGAAATGTTCTATATTTCAAATAAGATATGGATCGAGATGTGATTCAATATGTGCcattttctaaatgttttattCTTGCATGATGACAATTATGAAGTGTTTTTACTCCAGAATGTATTGTACTATGTTTGTCCTGTCCCCACGTTTGATTTTATGTTGTCTCTATGCCTACGCAACACGAAGTGTCCCCGTTTTCTACAGTATTATCGTGCTAGGCAGCTTTGTAGCAGCAAACCCTTCAAGGGTCCTTGTAGTATTGTATCTGTTTCCGAgggatttaaactcagttttttgttgtttttatgtTATCAAGTGTTCATATTGCCAATGTTTAGAAAGAGTATAGCTGTAGGCACTTAAGCATTATGTTAATCATCACTGTATTGCATCATTGTCTCGGTGGAGATGGCAGTACTTGCAATGTGTTTGTAAAATGCCAACAGAATGCATATTTTATAAAATATAAAGTCCTACAATCAAACAGAAG
>XM_036944064.1
CCTAGAGAGCCACGCCTGAGTGTGAATAGAGTTAAGATGAACTCTTCTGTCATTTGGGGACGATTTCTACTTTTCTCAGGCAAACGTTAGTCTTGTTAATTGAGTGCTCGCCACCATAAAAAGTGAATCTCGTTTGAAGCACCTACTACAGCGATTACCAAGCTACTGCCCTGAGTCTATGAATGAGCTTTGGATTTGCATCAACTCCACACTACCTGGAGCGTCCAGGAAGTCTGATGGTTGGGTTGGCCTTGGCTGCTGTGAGCTGGCCATCTCGGCAGAGTGCCGCAGAGAGTGCAAGCAGGCATCATCCAAGAACGACATcacaaaaatatgcaaaaaagaCACAGAGAAACCACTCTACAGCTGTATCATCAAAAATGAGATGGGCTCGGTGTGCTGCAGCTACGCAGGGAGACACACCAACTGCAGAGAGTACTGCCAGGCTATCTTCCGGACAGACTCCTCCCCCACCGTCTCTCAAATCAAAGCTGTCAAGGAATACTGCCAGAGCATCAGCCCAGAGCTCATTGGCTGTGTGGGCAACTACACCAAGTCTTACCCTATTAGAAGCCCTATAGACAGCCTGTACTGCTGCGACCGGGCAGATGAGCCCCACTGCCAGGTGGCATGCCGGCGTATCCTTCGCACCATGACCACAGAGCATGAGATCATGGAGGGCCTGATCGATGAGTGCGGCAGCCAGCCACTGCCCCAGGACCCACTGTGGCAGTGCTTCCTGGGCAGCGCCCACCCCCCAACCAAGAGCGAGACGGAGACCTCCCCCACCGCCAAGATGGACGGCGCCAAGCTGCACTGCTGCTCCAAAGCCAATACCTCATTGTGCAGGGATATGTGTCAGGAGATCAGCACCAACTGGGGCACTCAGACATGGCAGGAGTTTGACCAGATGTGCGAATACAACCCTGTGGAGACGGATCTGATCACCTGTTTGGCCGACGTCAGGGAGCCCTGCCAGCTAGGCTGTAAGGACCTGGCCTACTGCACCAACTTCAACAACAGGCCCACTGAGCTGTTCCGTAGCTGTAACATCCAATCAGACCAGGGCGCCATGAACGACATCAAGCTGTGGTCCAATGGGACGATCAAGATGCCCTTTATGAACATCCCCGTCCTGGACATCAGGAAGTGTCGTCCGGAGATGTGGAAGGCTGTGGCCTGCGCCCTGCAGATCAAACCCTGCTACAGCAAGTCCCGCGGCAGCGTCATCTGCAAGTCGGACTGTGTAGACATCCTGAcacagtgtggtgaccacaaacGCTTCCACGAGGGACAGACAGCCGAGCGCATCTGTGAGATCCTGTCCCCCATAGACGACCCTGAACGCTGCATCCCCCTGGAGAGATATCTCACTCCTAGCTCCCTGGGTAACATCATTGAGGAGGTCATCCACCCCTGTAACCCCAACCCCTGTCTCAGCAACCACCTGTGTGAGGTGAACAGGAAGGGCTGTCAGCCAGGACAGGACTGCCTGCCCTACTTCTGTGTGCCTGgctgtAAACTGGGCGAAGCCTCAGAGTTCCTGGTCCACCTGGAAGCCCGTATCCAGGTGCCCATGCGTAATGGGCAGGCGGGTTGCTTCGAGGTGTGTACCTGTGGCCAGAGTGGAAGGCTGGAGAACTGTGCTGAGATGCCCTGCATAGACACCTCCAAGACTTGCATTGTTGGGGGACAAAGAAAAAACCATGGGACGTCCTTCAGGGTAGACTGCCACCCCTGTTCCTGCTTCGCTGGAGAGACCATCTGCTCCACCCGCCAGTGCCTCAGCACCGACAGCTCAGACGAGGACCGCCGCCGcttcactgGGCTCCCATGTGGCTGCCCTGACCGCTTCGTGCCAGTGTGTGCCCGTAATGGCCGCACCTACCCCAGTGCCTGTGTGGCCCGTTGCATGGGCTTCAAAGACAACCAGTTTGTGTTTGGCCACTGCCGCAGCAGCGACCCCTGTTCCCCCAACCCCTGCCAGAAGAACCAGAGGTGCATTCCCAGCCGTAGAGTGTGCCTTACAGACATGGTTGACTGCCACTGTCCCCAGTATGAGTGTGTTGGTCGTCCCTCCGGCTGTGGCAAGATTCACATGGACCTGGCCTGCGACACAGACAACGTGGAGCACCCCAACCTCTGTCAGCTCCTCCAGATGGACAAGACCCTGGCCTATATGGGCCACTGTCAGGATGCCTGTAAAAAGGCGCGGCCTGTGTGCGGCCACAACGGCGAGACGTACAACACAGTGTGCGAGGCCTACTCGGACCGCGTTGCCGTGGACTATCAGGGGCGGTGCCACGCCGTGGGGGCGGTGGCAGAGTTTGCCTCTGACTCAGGCTGTGACATGATCCCCTGCCCCGCCCTGTCCACCCCGGGTTGCATCCCTGTCACACCACCCGGTGCATGCTGTCCTCTGTGTGCGGGCATGCTGCAGATCCTGTGGAACAAGGAGCAGATTAACAACTTCGCTAAGTTGAACAGGAAGCAGCCAGTGACGGTCCATGACATCCTGAGGATCCTGCGTCTCCACATCTCCGTGCCGCAGTGTGACATCTTCGGCTACCTGAGCATCGACTCAGAGATCATCGTCCTCATCGTCCCAGTGGACCAGCAACCCACCCCACTGCAGATTGAAGCCTGCAGCATGGAGGCGGAGAAGATTGACTCGCTCATCAACTACGGCAGCCCCACCCTGGTCtcccatgttcctctgtctgcctTCCTCACCTCCGAGGTCTCCATCTCCACCATCAGGTCCGCGGGCCACGCCAGCTCAACGCCCTCCTCCCTGCCCATCTTCTTCTGCCTCGCCCTGGGCCTCCTCCTCACTTTGGCACCAGGCCTATCCGAGGCCACGCTAGCCTCTGCTAGCCAGCCAGGCCCCGCTGGCAGGAGGCTGGGTGTGTTGTGGAGTATTCTGACCCCTTCTCGGGTCATTGCCTGACAGGAAGCATCAGCCTGTAAAAGCCTTGACAATCAATCCCATTAACTCTACTGCACCAGCGTCAACACAATCATGGACGAGAAGCTATGAGATGAATCCTAATTGAACAAGAGAAGCGGAGACACAATCACATTCCAGCTTTGGTTCCACAGAGCTCTATATATATCGTTATAAGGAAGATGAGTTTTATCACACAGGGTTTTGTATCTGTTTTATTCTGCAACAgaagctctctcctcctctaaagCTGTGGAGTGGGGAGTTTGTGTGGGTTTTTGCCTGCGTGCTTGTGTTTATGCGTATGTGTacgcacacgtgtgtgtgtgtgtgtgtgcgtgacacagagagagagaggaaccaggtggTTAAGTCTCAGAGGGGGAGTAGGGTCTAGATGTCAGACAGGTGCGCTCCCAAACACTGACATTTGTCCCAGATAATCTCAGGGGTGTAATTaccctcctccgcctcctccccctctcctcccctttctcccacTCCCATTTTACATTTCTACTATTGTAAATAAAGAGCGAGTGGGGAGGTGCTGACTGAGACAGTAATACTGGAACGTGAAACAGGTCAAAGGCAAGCAAGCATTCCCGCTCCGTAGGCTGAAAGACACAAAAGGGATTCTTGTTGTTCCTCTAGTGTAGATAAGATATCAAATAAGGAGGAACGACAGccatgtttttaatgaaaatgaCAATCATCACTTTACCCATGATACACATGGGTAGGAACAAAAAAAATAGCAACAACATGCTTTGCATATAGTTCCTATGTGAAATAAATGCAATAACTTTATAATGTTGATAATAATTATTCCGAAACTATTCCGAAATGTTCTATATTTCAAATAAGATATGGATCGAGATGTGATTCAATATGTGCcattttctaaatgttttattCTTGCATGATGACAATTATGAAGTGTTTTTACTCCAGAATGTATTGTACTATGTTTGTCCTGTCCCCACGTTTGATTTTATGTTGTCTCTATGCCTACGCAACACGAAGTGTCCCCGTTTTCTACAGTATTATCGTGCTAGGCAGCTTTGTAGCAGCAAACCCTTCAAGGGTCCTTGTAGTATTGTATCTGTTTCCGAgggatttaaactcagttttttgttgtttttatgtTATCAAGTGTTCATATTGCCAATGTTTAGAAAGAGTATAGCTGTAGGCACTTAAGCATTATGTTAATCATCACTGTATTGCATCATTGTCTCGGTGGAGATGGCAGTACTTGCAATGTGTTTGTAAAATGCCAACAGAATGCATATTTTATAAAATATAAAGTCCTACAATCAAACAGAAG

Function

NR:

description
reversion-inducing cysteine-rich protein with Kazal motifs isoform X1

GO: NA

KEGG:

id description
K17461 RECK, ST15; reversion-inducing-cysteine-rich protein with kazal motifs

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944063.1 False 4462 mRNA 0.52 21 21996818 22054060
XM_036944064.1 True 4277 mRNA 0.52 20 22015387 22054060

Neighbor

gene id symbol gene type direction distance location
LOC110489791 LOC106590282 coding upstream 4828 21909632 ~ 21991990 (+)
si:ch211-276f18.2 gfod1 coding upstream 152749 21804152 ~ 21844069 (+)
slc12a7b LOC106590280 coding upstream 202567 21729755 ~ 21794253 (+)
aoc1 LOC106590278 coding upstream 283684 21707736 ~ 21713134 (+)
LOC110489799 NA coding upstream 346852 21648137 ~ 21649966 (+)
tgfbr1b LOC106590284 coding downstream 7724 22061784 ~ 22125370 (+)
lancl2 lancl2 coding downstream 98770 22152830 ~ 22215450 (+)
LOC110489808 LOC106590291 coding downstream 908752 22962812 ~ 23028566 (+)
LOC100136251 LOC100136251 coding downstream 974883 23028943 ~ 23036510 (+)
pigm pigm coding downstream 984120 23038180 ~ 23044436 (+)
G1269351 NA non-coding upstream 72311 21923345 ~ 21924507 (+)
G1269340 NA non-coding upstream 90272 21905960 ~ 21906546 (+)
G1269333 NA non-coding upstream 94016 21902601 ~ 21902802 (+)
G1269330 NA non-coding upstream 96583 21899982 ~ 21900235 (+)
G1269171 NA non-coding upstream 111419 21885080 ~ 21885399 (+)
G1269513 NA non-coding downstream 72508 22126568 ~ 22130052 (+)
G1269737 NA non-coding downstream 262287 22316347 ~ 22350514 (+)
G1270180 NA non-coding downstream 529504 22583564 ~ 22583772 (+)
G1270359 NA non-coding downstream 768601 22822661 ~ 22823010 (+)
G1267949 pck2 other upstream 1155420 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 2316713 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 3134307 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 6102654 15885437 ~ 15895996 (+)
LOC110489812 rdh12 other downstream 1078799 23132828 ~ 23146739 (+)
G1270643 NA other downstream 1323248 23377308 ~ 23377560 (+)
G1270652 NA other downstream 1352600 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 1391778 23445838 ~ 23451494 (+)
LOC110489839 LOC106590236 other downstream 1612411 23666471 ~ 23836438 (+)

Expression


Co-expression Network