LOC110489807 (LOC106590288)


Basic Information

Item Value
gene id LOC110489807
gene name LOC106590288
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22644341 ~ 22676386 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562728.2
GTTGCTTTGAGTGACAGCTCTCTCAGTCTCTTCAATTATTTGGCATTTTTTGGTTGCTGAGAAAAGTGTGGAGCTATTTTGTTCTCCTCACACAAATCTGGGCTTAAATGCTAAAATTATTACTGGGTTTAAAAGTCGCCACTCCTGCTGCTGTACTTGATAATAATTTTCAATCTATAATGTTTAATATCTTTACGTTTATTTACATTTGAAAGGAATGTGAACAACGGGGTTTACAGAGGTGTAAAAAGGTGTGTAGACTTACGAACATATCCGTTGAGTCCAGCTCTACTTGTCGCTAGAGCACCAGGCACGCAATCAGCACGCAATAGGGGAGCTGGACACTGACGTTGCATCAACAGCCACGTACCGAGAGCTGGGAACAGAGGCTATTCTTTTACATACTTCACAACACCTTGTGCAGAGCGCGCAGTCGTCAGTCTCTATCCGCAAAGCCCGTGGCAGCGCACATAAAGAACTTCAGAAGCCTTGCTATAGTTCCAGCATGTTACATATTCGGCATTTTGTATCCAAGCATATCCGCATGGCAACAGTTTAATTTGCTGAGCAGTTTTGGAAGATCGTTTTTTCCTCGGCTGATGTGACATTATCCCTTTGGAATGATGTGGACCTCTCATGACTCTATTGGATTTGTTTTCCTGTCCAGTTTATGTATCCAATTTGGATTCTCCTTTGAAGGAAAGTTTACGGATATCCCCTCCAATCTAACAGTTAAAGAAGGTCAAAACATTGAAATGGCGTGCGCCTTCCAGAGTGGAACCGCATCAGTTTACTTGGAGATTCAGTGGTGGTTTATTAGAGCGCCAGAAGAACCGAGCAACagcgaggaggaggatgatgacgaAGAAATGGAAATGATACCAGAGCCTGATCCAGACGACGAAGGGACTAAAATAAGTACGGTGAAGGTACAGGGAAACGACATCTCCCACAAACTGCAGATCTCCCGGGTGGGGAAGAGTGACGAGGGCCTGTATGAGTGCAGAGTCACCAACGCCAACTACGGAGAGCTGCTGGAGTACAAGGTCCAGGCCTACCTGAATGTGAACAGCACCAGGCCCCGCATCAGACCGGTCAAGAAGACGTCCCCCCTGTCCCACCTGACAGCAGATAAGAAGCCCCGCAAGACAGGCTCCACAGCAGCACAAGACGGCATGAGCGCCGACCAAAGGGTCCGCTCTACCTCCAGCTCTCAGACTTCATCAGCCAAGACAGTCAAACACAGTTCAGGTACTAGGATAGCTACAAGCTACGGACTTGCCATCCTGATTCTTGGCTGTGGCTTTATGAGGGATACCTTGCTATAGTTTCAAGAACGGACTTTTCCTCCCAGTATCACTATGTATGGCCTATTATTACCACCAAGCAGACAGCACAGTTGGCCCTTTTTTCCCCCCACCGCTACTCTGCACCCAATGAATTCTTATTACCCATTGTACACAAGAGCCACCTTCTCAAAGGCCAGCTGCGGGATTACCTGTTGTGCCAATGTTTCTTCAGCACTCCCAACAATTGAAACAAAATGGAAACCGACAGTGTCTACTTGGAATATCTTTCACAAATACTCTTTATTTTGGTTTCCTGCAATACATTTATTGTGTCAAAGTAGAAAACAAAAGGATCTATATTTGTGTAATATATGAgtatataattgttttatttcaaaCTCCTTGAACTGTTTATAGCTTACATTCACTTTGTTGATCATGTAACTACATTGTACAAGGGTATTCATGCCCCACCCAAAACAAAAGAACTACTAAAATACAACAAAATGATGTATAGGCCTAGTTGGATTGCTAAATTAGGGCAACTCGACATTGTATTATTTTAAAATCTGCATATGTATAATCTGCAACTACAATTCTTGAACTTTGTTATTATGGATCTGTTCTTATTCATTCTCACATTCTTTACTTTTGTACGGTATTTCCTTTGGTATACAAAAACAATACTTCCATCTCTTGTAATTTCCTGATGTGCAACAGCTTCACATGTTATGAAGCATAATAATGTCAATGTTTATATGTGACTGTGCCAGCAGACCATTCGTTAAAATTTGGCTGCACTAATATTGTAAAAAGCCATTAAGAAATGGAATGCTTCACTTAGAGCACAGCTCTAATATTCAAATATGCTCCATTACTGAAAAGAAGAATCTAGGTACTGCTGTAGCCTAATGCTCAGGGGCATTGTCTTTGTGTAAAGAATCTCACATTAGCCAAGAAGAGTTCTTATGCCATTTGATGGTGCAATGATGCCCCAACGGTATCTATAGTATACGAGGAAACAGTTTAAAGGTCTTGTGATTAAGAAAATGGTTTTAAATTGTTCTCGCTCTTGTCCATTCTCAATGTTCATCGACACAACGCTTTGACAATCTGACCTCTTGTTTCAGAACCCGTTAGCAGAAGTCATGGATTCTACTGTTATACTAAACTGTTAATATATATAGAATCTTTCTAAATGTCTATCTGCAATGTTCCATAGACATTCACCACTTGGAATCATTTCAATTCACTATATGGATGCACCTATTTTATGTAGCGTCATTGTTAAGTGCAATGACCACTGGACATATTATGCCACCATAGCTAAGGTATGAATAGGTGGTATTGGTAATCGTGCAGCAACAGTGCTTCAGATCTGCCTTTCAGTTGAGTTGAAGAGGGTATCCATAGACTGAAGAGAGTCTCCATTTTAAAATGTATCATGTGACCAAAGACCGTGGCTATGGCCATACAATATTGACGCTCACCAACATCGATCTCTTTGCACATTGCTTATACTGTAGCCTAGTGTTCTCACATATTGTGCCCCTTTATTCCCTATCTTTTTACAATCTCAGAACGAGGCGGACAATCTGCCCAGATTCACAAAGCACCATCTGTCCATTTCTTCAAATCGTATTTAAAATAACAGCACTTTGGATGGAATAATTACATGTATTGGCAGTACAAAAAAATTACTGGGGCCACTAAGAAGCAGGATTTTGCTTAAGGTCTCCACCGTAAACAGTCTACAGTCTTCTGTAGATAGCGCTGCTGAACTCAGTGAGGGATCTTAACCTGTTGATACAGCAGTTGGAGTTAGCTGACAGAGCAAATAATACAGAGGAATCCAGCTAGAGACATATCCTGATCAGCAAGTCTTGTCAGGGTACAAAATGtgtgggctatatacagtatttaatCTGCGCTGGTTCCCGGGATGAGAACAGTTAATCTAGCAGAGCTGTGTCATGCTGCTTAACCTCAAATCAATATTAGGCTATTGTCCATTGAGTAAAAGTTATTTTATGACTATTATCACAAATCCTAACTGTTCAGTTTTGAGGAAGAAGATTTTGAGAACTTGACATCTGCTAGTAGAATGTTTATCACATACTTCTCCAAGCAGGTAAAATGGATAGCATATCTGTGTGCACAGTAAAAGAATGCCTTCAGTTTATCAAATCCCTGtataaaatgttaaaaataaaataaaaaatctgtaAAACTTGTAAAGTAATCAGCATGTAACCTTTTTTATCCAAATGTTTAAAAGCAGAGACAAGTTATGTTCTGTATTTGTAACAATGTTGTCATATTCGTTGTGAAGCACTAACAACAGGAAATGGAATTTAAAAACAACTTTATTGACAGTCTGTTAAGGAGGACCACTTGCCATGGCAGTGCACACCTGTTGCAAGGCCAATTACTTCAACACGAAATGGAATCACTACAGAGTACAAGTTCAAGCAAAGTGGATATATAATTTAAAGGATCGACAACAGTCGTCTGATAAGGGAATTGCAACGTCTGACAATTGTGGTGGCTAACAAGCAACGAAGTCTCAGTCCATCAAACAAGatactatattatgacatttgAGCAACACAAATCCATGGATATTGTTTCAGAAACAACACAGCAGTTATGTTTTGTTTATGACGCCGATGTCCATTGTTTCAGCTCCACATAGATGAATTGTTTCCTTATTACGCTTCATCTCAATGCAGTCTTATCTGTTTGTTGAGCTGTCAAAAATGTTatgacctgtaattttcattttatttggTACTGTGTGAAGCTTCTGTACTGGAACGTTGCAGCAGTTTGTATTATAATGATGATATCagaaaaatatttaaataaatcattttcaCAGATGGGATTCAAACACCGCTTCCTCTGCTGGATTCCATCTGTTAAATCGGTAACACATTATGACTTGACTTAGTGAGTACATTGGATGTAGTTCACTGGGCGATCATAGTGTGGCACATAATGGGGCACGTACTGCGCATTCAACCATTCCGAGTGGATATCAGGACAAAGCTTAACGCTGTCTGGTCAAAACACCACTGAAGGTTTTAGAGAGGTCCAAACCACAAAAAGTATCTTTACCCTGGTTGCAATTATAACAACTAAAATGTTTTATCCAATAAGATTGCAAGGATGCCAACTGGATATTCGTATTTTCAATTAGTTGTGTCTattggctcacaacaccatctgTGGCATTGCTATCATTAAAGTCTGCTGTAGGAGAAACTGTTTTCTGCACAGGTTGCGACGTTGTTACAACTATACAGTGTACACAATATGGACACACGAGTACGCATGTCCTACTATGTACACTGTACAGCTATAAAAACATACTTTTTTTATAGAAGAGATCTATCTTTAGTTACTGTATGCAAGATTGTGTTCACCCTTGTATCATATAAATGTAATTTAGTAAATAGTTATCAGAGTTATGAGGGGGTGATCAAACAGATTCCCGGTTCCTGCTAAAGATACCCACAAATTCTCTacaacgacgttggaggcagcttatggtagagaaataaacataacattctctggcaacagctctggtggacattcctgcagtcagcatgccaattgcatgctcccttagaacttgagacatctgtggcattctgttgtgtgacaaaactgcacacttTGTGGCAGTTGTTTGTGGCCTTTTAATGTCTccagcacctgtgtaatgatcatgctgtttaatcagctttttgacatgacacaaaatctgagagaaataagcctttcgtgcatgtggaacatttctgggatctttaatttcagctcatgaaacatgggaccaacacatataaacatgttgcgtttatatttttgttcagtggtaGTTTGAAAATAAAGATGATAAATGTACTTTGGTGCTAA

Function

NR:

description
V-set and transmembrane domain-containing protein 2A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562728.2 True 5216 mRNA 0.40 5 22644341 22676386

Neighbor

gene id symbol gene type direction distance location
LOC110489790 LOC106590241 coding downstream 197646 22367531 ~ 22446695 (-)
LOC110489802 LOC106590287 coding downstream 284835 22312796 ~ 22359506 (-)
LOC110489804 LOC106590285 coding downstream 333070 22215471 ~ 22311271 (-)
LOC110489796 LOC106590244 coding downstream 780228 21853700 ~ 21864113 (-)
scospondin sspo coding downstream 963977 21617419 ~ 21680364 (-)
LOC118938910 NA coding upstream 119178 22795564 ~ 22796979 (-)
LOC110490829 LOC106590245 coding upstream 221726 22898112 ~ 22899241 (-)
si:dkey-225n22.4 LOC106590290 coding upstream 231530 22907916 ~ 22955764 (-)
LOC110489811 LOC106590294 coding upstream 384298 23060684 ~ 23122826 (-)
LOC110489813 LOC106590295 coding upstream 470483 23146869 ~ 23156952 (-)
G1270184 NA non-coding downstream 58754 22585343 ~ 22585587 (-)
G1270181 NA non-coding downstream 60506 22583528 ~ 22583835 (-)
G1270139 NA non-coding downstream 93109 22550994 ~ 22551232 (-)
G1270119 NA non-coding downstream 98870 22545265 ~ 22545471 (-)
G1270105 NA non-coding downstream 106128 22537977 ~ 22538213 (-)
G1271047 NA non-coding upstream 124929 22801315 ~ 22805575 (-)
G1271074 NA non-coding upstream 156819 22833205 ~ 22834370 (-)
G1271082 NA non-coding upstream 164100 22840486 ~ 22840912 (-)
G1271085 NA non-coding upstream 167212 22843598 ~ 22843829 (-)
G1271201 NA non-coding upstream 346919 23023305 ~ 23026796 (-)
G1269265 NA other downstream 840989 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 1684252 20958372 ~ 20960089 (-)
G1267452 NA other downstream 2353668 20290350 ~ 20290673 (-)
G1267414 NA other downstream 2375853 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3190571 19435018 ~ 19453770 (-)
G1271421 NA other upstream 1036969 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 3369862 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3835139 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3878582 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3893892 26566351 ~ 26694581 (-)

Expression


Co-expression Network