LOC110490829 (LOC106590245)


Basic Information

Item Value
gene id LOC110490829
gene name LOC106590245
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22898112 ~ 22899241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945575.1
CACACCAAGCAATGGAAATGGACATGAACTCCTCGTTTGGGGAGACAACAGCGGGCTACGCAGACTACAGCTCAGAGACTGACGCTCCGCTCTGCAACAGAGAAACGAACCACAACTTTGGGGTCAAACTCTCCACCTTCTACCTGCTGATTTTCACACTGAGTGTGGTGGGAAACAGCTTGGTCCTCTATATCATCTGCAAGTTCGAGAAACTCAACACGGTGGGGAACATCTTCCTCCTCAACCTGGTGGTGTCGGACCTGGTCTTCATGTCCAGTCTGCCCTTCTGGGCCGTATACCACCACAAGTCCAGCTGGATCTTCGGCCGGGTCTGGTGTAAGATTGTGGGCAGCGCCTACTTCCTGGGTTTCTACAGCTCGATCCTGTTCCTCACCCTAATGACCTTTGACCGGTACCTGGCAGTGGTCTACGCCGTGCCGTCCACCAGGCTACGTCGGAGGAGCTACGCCCTCGCCTCATCCGCCGCTGTGTGGGGCATCAGCCTCCTGGCGTGTATCAAGCCGTTTCTACTCTATGACCAGGCCGAGCATTACTACCAGGGGTTGGTGTGTGAGGAGGTTGGTACCCCAGAATCGATTGTCTCTGAGGAATTGGAGCTGTCGGGGCCATATCTCCAGTTAGGTTTATTTTTCCTATTTCCTCTCATTGTTGTTTTTTACTGCTACGTTAGGATTGCCGTGACGGTCATCTCCTCCAGGATGACCAACAAGTACAGGACGGTGAGACTCATATTTGTCATAGTACTGCTGTTCTTTGCATGCTGGACTCCTTATAATGTGGTGGTGATGCTTCAAGCAGCTGAAGTCGACTGTGTGAAACTCCGTAAGCTTGACTATGCGCTGCATGTTACTCGTATGGTCACATATCTGTACTTCTGTATCAATCCTGCCTTCTACACCTTTGTGGGGAGAAAATTCCAGAACCACTTCCGGATTCTGCTGCAGAAACATATGCCGTGTTTAAAGAACCATGTCTCAATCAATGGTAGCCGGACACTGTCACATATTAGAAACCCTCAAGTGGGCATAACTAGTCAAACAGATGTTCTGGTATGATATAGGAGCCCTGTGGCACAGGAATGCACATTCATTCATGTCTAGGAGTCTCAT

Function

NR:

description
C-C chemokine receptor type 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945575.1 True 1130 mRNA 0.50 1 22898112 22899241

Neighbor

gene id symbol gene type direction distance location
LOC118938910 NA coding downstream 101133 22795564 ~ 22796979 (-)
LOC110489807 LOC106590288 coding downstream 221726 22644341 ~ 22676386 (-)
LOC110489790 LOC106590241 coding downstream 451417 22367531 ~ 22446695 (-)
LOC110489802 LOC106590287 coding downstream 538606 22312796 ~ 22359506 (-)
LOC110489804 LOC106590285 coding downstream 586841 22215471 ~ 22311271 (-)
si:dkey-225n22.4 LOC106590290 coding upstream 8675 22907916 ~ 22955764 (-)
LOC110489811 LOC106590294 coding upstream 161443 23060684 ~ 23122826 (-)
LOC110489813 LOC106590295 coding upstream 247628 23146869 ~ 23156952 (-)
pks1 LOC106590299 coding upstream 312876 23212117 ~ 23221568 (-)
LOC110489819 LOC106590300 coding upstream 322451 23221692 ~ 23242314 (-)
G1271085 NA non-coding downstream 54283 22843598 ~ 22843829 (-)
G1271082 NA non-coding downstream 57200 22840486 ~ 22840912 (-)
G1271074 NA non-coding downstream 63742 22833205 ~ 22834370 (-)
G1271047 NA non-coding downstream 92537 22801315 ~ 22805575 (-)
G1270184 NA non-coding downstream 312525 22585343 ~ 22585587 (-)
G1271201 NA non-coding upstream 124064 23023305 ~ 23026796 (-)
G1271285 NA non-coding upstream 276629 23175870 ~ 23176099 (-)
G1271287 NA non-coding upstream 278751 23177992 ~ 23178191 (-)
G1271297 LOC106590247 non-coding upstream 297211 23196452 ~ 23203364 (-)
G1271299 NA non-coding upstream 305346 23204587 ~ 23204788 (-)
G1269265 NA other downstream 1094760 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 1938023 20958372 ~ 20960089 (-)
G1267452 NA other downstream 2607439 20290350 ~ 20290673 (-)
G1267414 NA other downstream 2629624 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3444342 19435018 ~ 19453770 (-)
G1271421 NA other upstream 814114 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 3147007 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3612284 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3655727 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3671037 26566351 ~ 26694581 (-)

Expression


Co-expression Network