si:dkey-225n22.4 (LOC106590290)


Basic Information

Item Value
gene id si:dkey-225n22.4
gene name LOC106590290
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 22907916 ~ 22955764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562733.2
GTCTCCCTCTAGTGACGATACAGAGAATTTCTATTTGTACAATAAATCTTTTTGTCTTAAGTTTGTCTCTGGAGAGGGACAGTTTTTACTGTGCTAGTCTCCTGGAATTGAAAAGACTGTGAAGACTGGACCGGGACACCTCTTAAAGAACAATGGCATGGACATTAAGGTCACTGACTATGCTGCTGTTTCTGGCATATCTACAGGCAATAGAGGAGGAGGATATCAGAGctgGCTGCAGCACGGCGGTGAATGACCTAGTCTACATCATAGATGGCTCGTGGAGCGTGGGCCACAGTGACTTCAAAAAGGCCAAGAGCTGGCTCGTCAACATCACCAGCGGCTTCGACATCAGCTCCCACTACTCACAGGTGGCCGTGGTGCAGTACAGCGACACCCCTCGTCTGGAGATCCCCCTGGGGAAGCACCACGGTGGCCCGGACCTCATCCAGGCCATCGAGGGCATCAGCTATCTAGGCGGGAACACTCAGACGGGCCGAGCCATCAAGTTCGCCGTAGATCACGTGTTCCCGTCCTCGCAGCGCACCAGCACCGTCAAGAACCGCATTGCGGTGGTGGTGACGGACGGAAAGTCCCAGGATGATGTGGTGGATGCTAGCGTGGAAGCACGGGCGCAAGGCGTCATTGTGTTCGCCGTGGGAGTGGGCACCGAGATCACCACCTCAGAGCTGATGTCCATCGCCAACAAGCCGGGGGGGACCTACGTGTTGTATGCCGAGGACTACGCCAACATAGACCGAATCCGAGACTCCATGGAGCAGAGACTGTGTGAGGAGTCTGTGTGTCCTACGCGTATCCCAGTGGCCTCCAGGGATGAGAAGGGCTTTGAGTTGATGCTGGGCATGAATATCCACCAGAAGACCAAGAAGATCCAAGGCTCTCTGGTGTCTGAGACAGCCTTCTCCTTGACCACCTCAACAGACATCACAGAGAACACAAGGGAGATCTTCCCAGAGGGTCTGCCTCCATCCTATGTGTTTGTGGCCACGGTCCGCCTCAAGGGTTCAGCCAAACAGGACAAGTTTGACCTGTTGAGGATCCTTTCTAAAGATGGCGTCACCCAGGCAGCAGTGACACTGAACGGAGCGGACAAGTCTGTCACTTTCACGACCACCAGCACCACCAATGAGAAGCAGCTGGTCACCTTTAATGTGCAGGGCATTGGGAGTTTCTTTGATGAAGGCTGGCACCAGCTGAAGCTGCTCGTGAGGCCCCGGCAAGTAACCGGTTTCCTGGACGATGAGGAGATCCAGGAAGTGGCGCTACTGGAGCCGGTGGAGCCAATCTACATCAACGGCAAGACGCAGGTCGCCAAGAAGTTTGGGGCGGAGACCACAGTCCCTGTGGAGATACAGAAACTGCGCCTTTATTGTGACCCTCatcaaagcgagagagagacagcctgtGAAATCTACTCTGTGGATGATGAGAGGTGTCCCCTGGACCGTGAGCCCACAGTGGAGGAAGTGGAGTGTGACTGTGCTAATGGCAGCCCAGGACCACCTGGCCCTCCTGGACCTATGGGTCTCCGAGGCGAGATAGGAAGAGCAGGACCACCAGGCCCTGACGGTAAGCCTGGAACCCAGGGTGAGCCTGGTGGGTCTGGAGAACCTGGGTTTCCTGGCGAGACGGGTGAATTGGGCCAACTAGGACCCAGCGGGGCTCCAGGTCTGACAGGTGGCAAGGGCGAGAGAGGGGATCCAGGACTGCCGGGGAAACCGGGCCCGCCAGGACCAAAGGGTCCTGCCACCTCACAATTAAACCTGGGTTCTGTTGGAATGCCAGGGAAAAAGGGACTTCCGGGTGAGAGGGGACAAACCGGACCTCCGGGTGAGATTGGACCAATGGGGGGACCAGGAGTGCAGGGCAAAGATGGAATGATTGGGCCGGTGGGACCAAAGGGAGACAAAGGAGATATTGGAATGTCTGGTGCTGATGGacaacagggggtaccgGGGATCCGGGGGCTTCCTGGAGGGGCGGGGCCAACAGGACCTCAGggagagagaggagcacttGGGCAGAAGGGATCGACAGGTCCAAAAGGTCCACAGGGAATTCAAGGCCCCCAGGGAGACCCTGGAGCCAGTGGACGCGATGGCCCAAAGGGAAGCGAGGGGGAGCGAGGTTCCGATGGCTCTCCAGGAATGCCAGGCCAAAAGGGCACACCAGGAGAGGCAGGCTTCCTTGGGTCCCCGGGCACTAATGGCCTACCTGGGTTCAAAGGTCCCAAGGGAGAAACTGGAGAGGCGGGTCCCAGAGGAAGTCAGGGCGAACGAGGCACCGATGGGGCCCTTGGGAACCCCGGCTTACCAGGTGAAGCTGGACCCAGGGGAGGCAAAGGACAGAAAGGCATCACGGGGGATATCGGTGTCAGAGGCACCGATGGGAAGAAAGGGGGCATGGGACACGTGGGGGCCGCTGGCCCACGGGGATCTCCCGGCGAGGACGGGTTGCCTGGGCAACCGGGAACGCCGGGCTACCCTGGGAAGCCTGGGAAGCCTCCCTCTGACGACCACATGATGAAGCTCTGCGGCGATGTGTTGCGGAATCAGCTCCCCCAGCTGCTGCAGACACTATCCCCTCTCAGCAGATGTGAGCCGTGTGAGACGGTGAAGGGACCCCCGGGACAGCCTGGAGCACCAGGACTCAAAGGTTCCTCAGGAACCCCGGGCTATCCCGGTAGAATCGGCTCACCAGGATATCCAGGAACCCCCGGCATGCAGGGGCCCCAGGGAGTCAAAGGTGACACTGGACCAAGAGGACTCAAAGGCACCAAAGGAGAGGGCCGTCCAGGGTCACCAGGCCCTACTGGACAGTCAGGAGTTCAGGGGCCTCGCGGATCGGATGGCATCGGACGCCCGGGCACTCAGGGGATGCCTGGGAAGTCAGGAAGTCCCGGAATGCCAGGGAAACAAGGGTCATCAGGACTACCAGGAGTTTGTGACATGTCTTCTTGCTACCAGGCCTACAACCTCAGGAATGACCCCTACAGCAAAGGGCCCAACTTCTGAGAGGAAGGGGCCCCTAGAGGGGAGGACGGGCTTCAATGTCGGGGTCAAGATGCAACGTCATACAGTACTTTAAGACAGTGATGTCCAATCTTTTCGGCAAAGGGGAGTGTTTCgctgcaggcttttgctccagccaTACACTAACACACCTGAAAATGGAATAAAGGTCTGCACCCACACTGGCTCTTTGCAGATAAGATTGGACACCAATGCTTAAAAGCCATCTCCTCGTGGACACCCAGACATTTCACATATTTGTTCTAGCCCTGAACTGGCACACCTGATTCCGTTAGTAAAGGGCTTGGTGATAATTGactaattgaatcaggtgtgccagtTTAGGGATACAACAAATATGTAAAAATACCTAtggtccctgaggagagggttGGGAAACCCTGTTTTAAGGCATATGGGAGTCCACTTTGCTGTTCAGTAGAAATATTTGTCCCGATTAACTGAAACTAGGTCTACGTATATTGAGACATAGTCTTGGTTTCGTATACTGTATGTTTGTAGGTTTCAGGATAAATGATAGAAACCATATGTTTTGGACTTTTAATGGTGATTGTCCAAAGAGAATCATCATAGTCCTTGGTACTGTAACACTACCTCGTTGCTGGACACAAGGCATTACATATAAGTACACCAGTGAAAAATGTTTTGTAAAACCAGGGTAtgaaacatatttaaaaaaatgtataccaTAAGATGTTGTTGTCAAGCCCTCCATATGTAAATATTTTACAGCATGTCAAAATGTAAATATGTTGCGGGCTGAGGTAAACACAGAGTAACTGCTAATTAGTACAATAACAGGCTACCTGGATTCAACCACAGAATGTgctactatagtaagtgcctggTGCATTTTTACAAGACAACATTGTGAGAATTTCGGCTTAAAATGTATCCCAACTACGAAAACGGTACTGTAGATAATATATTAATTCATCTTGTACCTTTATAAACCCATACCATAAATGAAATTAAACCTCAGGAACTGCTTCAAA
>XM_021562735.2
GTCTCCCTCTAGTGACGATACAGAGAATTTCTATTTGTACAATAAATCTTTTTGTCTTAAGTTTGTCTCTGGAGAGGGACAGTTTTTACTGTGCTAGTCTCCTGGAATTGAAAAGACTGTGAAGACTGGACCGGGACACCTCTTAAAGAACAATGGCATGGACATTAAGGTCACTGACTATGCTGCTGTTTCTGGCATATCTACAGGCAATAGAGGAGGAGGATATCAGAGctgGCTGCAGCACGGCGGTGAATGACCTAGTCTACATCATAGATGGCTCGTGGAGCGTGGGCCACAGTGACTTCAAAAAGGCCAAGAGCTGGCTCGTCAACATCACCAGCGGCTTCGACATCAGCTCCCACTACTCACAGGTGGCCGTGGTGCAGTACAGCGACACCCCTCGTCTGGAGATCCCCCTGGGGAAGCACCACGGTGGCCCGGACCTCATCCAGGCCATCGAGGGCATCAGCTATCTAGGCGGGAACACTCAGACGGGCCGAGCCATCAAGTTCGCCGTAGATCACGTGTTCCCGTCCTCGCAGCGCACCAGCACCGTCAAGAACCGCATTGCGGTGGTGGTGACGGACGGAAAGTCCCAGGATGATGTGGTGGATGCTAGCGTGGAAGCACGGGCGCAAGGCGTCATTGTGTTCGCCGTGGGAGTGGGCACCGAGATCACCACCTCAGAGCTGATGTCCATCGCCAACAAGCCGGGGGGGACCTACGTGTTGTATGCCGAGGACTACGCCAACATAGACCGAATCCGAGACTCCATGGAGCAGAGACTGTGTGAGGAGTCTGTGTGTCCTACGCGTATCCCAGTGGCCTCCAGGGATGAGAAGGGCTTTGAGTTGATGCTGGGCATGAATATCCACCAGAAGACCAAGAAGATCCAAGGCTCTCTGGTGTCTGAGACAGCCTTCTCCTTGACCACCTCAACAGACATCACAGAGAACACAAGGGAGATCTTCCCAGAGGGTCTGCCTCCATCCTATGTGTTTGTGGCCACGGTCCGCCTCAAGGGTTCAGCCAAACAGGACAAGTTTGACCTGTTGAGGATCCTTTCTAAAGATGGCGTCACCCAGGCAGCAGTGACACTGAACGGAGCGGACAAGTCTGTCACTTTCACGACCACCAGCACCACCAATGAGAAGCAGCTGGTCACCTTTAATGTGCAGGGCATTGGGAGTTTCTTTGATGAAGGCTGGCACCAGCTGAAGCTGCTCGTGAGGCCCCGGCAAGTAACCGGTTTCCTGGACGATGAGGAGATCCAGGAAGTGGCGCTACTGGAGCCGGTGGAGCCAATCTACATCAACGGCAAGACGCAGGTCGCCAAGAAGTTTGGGGCGGAGACCACAGTCCCTGTGGAGATACAGAAACTGCGCCTTTATTGTGACCCTCatcaaagcgagagagagacagcctgtGAAATCTACTCTGTGGATGATGAGAGGTGTCCCCTGGACCGTGAGCCCACAGTGGAGGAAGTGGAGTGTGACTGTGCTAATGGCAGCCCAGGACCACCTGGCCCTCCTGGACCTATGGGTCTCCGAGGCGAGATAGGAAGAGCAGGACCACCAGGCCCTGACGGTAAGCCTGGAACCCAGGGTGAGCCTGGTGGGTCTGGAGAACCTGGGTTTCCTGGCGAGACGGGTGAATTGGGCCAACTAGGACCCAGCGGGGCTCCAGGTCTGACAGGTGGCAAGGGCGAGAGAGGGGATCCAGGACTGCCGGGGAAACCGGGCCCGCCAGGACCAAAGGGTCCTGCCACCTCACAATTAAACCTGGGTTCTGTTGGAATGCCAGGGAAAAAGGGACTTCCGGGTGAGAGGGGACAAACCGGACCTCCGGGTGAGATTGGACCAATGGGAGACAAAGGAGATATTGGAATGTCTGGTGCTGATGGacaacagggggtaccgGGGATCCGGGGGCTTCCTGGAGGGGCGGGGCCAACAGGACCTCAGggagagagaggagcacttGGGCAGAAGGGATCGACAGGTCCAAAAGGTCCACAGGGAATTCAAGGCCCCCAGGGAGACCCTGGAGCCAGTGGACGCGATGGCCCAAAGGGAAGCGAGGGGGAGCGAGGTTCCGATGGCTCTCCAGGAATGCCAGGCCAAAAGGGCACACCAGGAGAGGCAGGCTTCCTTGGGTCCCCGGGCACTAATGGCCTACCTGGGTTCAAAGGTCCCAAGGGAGAAACTGGAGAGGCGGGTCCCAGAGGAAGTCAGGGCGAACGAGGCACCGATGGGGCCCTTGGGAACCCCGGCTTACCAGGTGAAGCTGGACCCAGGGGAGGCAAAGGACAGAAAGGCATCACGGGGGATATCGGTGTCAGAGGCACCGATGGGAAGAAAGGGGGCATGGGACACGTGGGGGCCGCTGGCCCACGGGGATCTCCCGGCGAGGACGGGTTGCCTGGGCAACCGGGAACGCCGGGCTACCCTGGGAAGCCTGGGAAGCCTCCCTCTGACGACCACATGATGAAGCTCTGCGGCGATGTGTTGCGGAATCAGCTCCCCCAGCTGCTGCAGACACTATCCCCTCTCAGCAGATGTGAGCCGTGTGAGACGGTGAAGGGACCCCCGGGACAGCCTGGAGCACCAGGACTCAAAGGTTCCTCAGGAACCCCGGGCTATCCCGGTAGAATCGGCTCACCAGGATATCCAGGAACCCCCGGCATGCAGGGGCCCCAGGGAGTCAAAGGTGACACTGGACCAAGAGGACTCAAAGGCACCAAAGGAGAGGGCCGTCCAGGGTCACCAGGCCCTACTGGACAGTCAGGAGTTCAGGGGCCTCGCGGATCGGATGGCATCGGACGCCCGGGCACTCAGGGGATGCCTGGGAAGTCAGGAAGTCCCGGAATGCCAGGGAAACAAGGGTCATCAGGACTACCAGGAGTTTGTGACATGTCTTCTTGCTACCAGGCCTACAACCTCAGGAATGACCCCTACAGCAAAGGGCCCAACTTCTGAGAGGAAGGGGCCCCTAGAGGGGAGGACGGGCTTCAATGTCGGGGTCAAGATGCAACGTCATACAGTACTTTAAGACAGTGATGTCCAATCTTTTCGGCAAAGGGGAGTGTTTCgctgcaggcttttgctccagccaTACACTAACACACCTGAAAATGGAATAAAGGTCTGCACCCACACTGGCTCTTTGCAGATAAGATTGGACACCAATGCTTAAAAGCCATCTCCTCGTGGACACCCAGACATTTCACATATTTGTTCTAGCCCTGAACTGGCACACCTGATTCCGTTAGTAAAGGGCTTGGTGATAATTGactaattgaatcaggtgtgccagtTTAGGGATACAACAAATATGTAAAAATACCTAtggtccctgaggagagggttGGGAAACCCTGTTTTAAGGCATATGGGAGTCCACTTTGCTGTTCAGTAGAAATATTTGTCCCGATTAACTGAAACTAGGTCTACGTATATTGAGACATAGTCTTGGTTTCGTATACTGTATGTTTGTAGGTTTCAGGATAAATGATAGAAACCATATGTTTTGGACTTTTAATGGTGATTGTCCAAAGAGAATCATCATAGTCCTTGGTACTGTAACACTACCTCGTTGCTGGACACAAGGCATTACATATAAGTACACCAGTGAAAAATGTTTTGTAAAACCAGGGTAtgaaacatatttaaaaaaatgtataccaTAAGATGTTGTTGTCAAGCCCTCCATATGTAAATATTTTACAGCATGTCAAAATGTAAATATGTTGCGGGCTGAGGTAAACACAGAGTAACTGCTAATTAGTACAATAACAGGCTACCTGGATTCAACCACAGAATGTgctactatagtaagtgcctggTGCATTTTTACAAGACAACATTGTGAGAATTTCGGCTTAAAATGTATCCCAACTACGAAAACGGTACTGTAGATAATATATTAATTCATCTTGTACCTTTATAAACCCATACCATAAATGAAATTAAACCTCAGGAACTGCTTCAAA

Function

NR:

description
collagen alpha-1(XXI) chain-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562733.2 False 4048 mRNA 0.54 31 22907916 22955764
XM_021562735.2 True 3994 mRNA 0.54 30 22907916 22955764

Neighbor

gene id symbol gene type direction distance location
LOC110490829 LOC106590245 coding downstream 8675 22898112 ~ 22899241 (-)
LOC118938910 NA coding downstream 110937 22795564 ~ 22796979 (-)
LOC110489807 LOC106590288 coding downstream 231530 22644341 ~ 22676386 (-)
LOC110489790 LOC106590241 coding downstream 461221 22367531 ~ 22446695 (-)
LOC110489802 LOC106590287 coding downstream 548410 22312796 ~ 22359506 (-)
LOC110489811 LOC106590294 coding upstream 104920 23060684 ~ 23122826 (-)
LOC110489813 LOC106590295 coding upstream 191105 23146869 ~ 23156952 (-)
pks1 LOC106590299 coding upstream 256353 23212117 ~ 23221568 (-)
LOC110489819 LOC106590300 coding upstream 265928 23221692 ~ 23242314 (-)
acbd5a acbd5 coding upstream 298122 23253886 ~ 23275145 (-)
G1271085 NA non-coding downstream 64087 22843598 ~ 22843829 (-)
G1271082 NA non-coding downstream 67004 22840486 ~ 22840912 (-)
G1271074 NA non-coding downstream 73546 22833205 ~ 22834370 (-)
G1271047 NA non-coding downstream 102341 22801315 ~ 22805575 (-)
G1270184 NA non-coding downstream 322329 22585343 ~ 22585587 (-)
G1271201 NA non-coding upstream 67541 23023305 ~ 23026796 (-)
G1271285 NA non-coding upstream 220106 23175870 ~ 23176099 (-)
G1271287 NA non-coding upstream 222228 23177992 ~ 23178191 (-)
G1271297 LOC106590247 non-coding upstream 240688 23196452 ~ 23203364 (-)
G1271299 NA non-coding upstream 248823 23204587 ~ 23204788 (-)
G1269265 NA other downstream 1104564 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 1947827 20958372 ~ 20960089 (-)
G1267452 NA other downstream 2617243 20290350 ~ 20290673 (-)
G1267414 NA other downstream 2639428 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3454146 19435018 ~ 19453770 (-)
G1271421 NA other upstream 757591 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 3090484 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3555761 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3599204 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3614514 26566351 ~ 26694581 (-)

Expression


Co-expression Network