Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489808 |
| gene name | LOC106590291 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 22962812 ~ 23028566 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021562729.2 | False | 6669 | mRNA | 0.49 | 14 | 22962812 | 23028566 |
| XM_021562730.2 | False | 6721 | mRNA | 0.49 | 14 | 22962812 | 23028566 |
| XM_021562731.2 | False | 6712 | mRNA | 0.49 | 14 | 22962812 | 23028566 |
| XM_036944073.1 | False | 6727 | mRNA | 0.49 | 14 | 22962812 | 23028566 |
| XM_036944074.1 | False | 6655 | mRNA | 0.49 | 13 | 22962812 | 23028566 |
| TU1451376 | True | 1704 | lncRNA | 0.38 | 1 | 23026861 | 23028564 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lancl2 | lancl2 | coding | upstream | 747362 | 22152830 ~ 22215450 (+) |
| tgfbr1b | LOC106590284 | coding | upstream | 837442 | 22061784 ~ 22125370 (+) |
| LOC110489805 | LOC106590283 | coding | upstream | 908752 | 21996818 ~ 22054060 (+) |
| LOC110489791 | LOC106590282 | coding | upstream | 970822 | 21909632 ~ 21991990 (+) |
| si:ch211-276f18.2 | gfod1 | coding | upstream | 1118743 | 21804152 ~ 21844069 (+) |
| LOC100136251 | LOC100136251 | coding | downstream | 377 | 23028943 ~ 23036510 (+) |
| pigm | pigm | coding | downstream | 9614 | 23038180 ~ 23044436 (+) |
| LOC110489812 | rdh12 | coding | downstream | 104262 | 23132828 ~ 23146739 (+) |
| LOC110489816 | LOC106590246 | coding | downstream | 129391 | 23157957 ~ 23162305 (+) |
| LOC110489814 | LOC106590296 | coding | downstream | 134129 | 23162695 ~ 23172409 (+) |
| G1270416 | NA | non-coding | upstream | 59242 | 22903282 ~ 22903570 (+) |
| G1270414 | NA | non-coding | upstream | 61926 | 22900505 ~ 22900886 (+) |
| G1270390 | NA | non-coding | upstream | 100960 | 22861587 ~ 22861852 (+) |
| G1270389 | NA | non-coding | upstream | 101541 | 22860947 ~ 22861271 (+) |
| G1270386 | NA | non-coding | upstream | 105096 | 22857235 ~ 22857716 (+) |
| G1270489 | NA | non-coding | downstream | 21198 | 23049764 ~ 23049975 (+) |
| G1270541 | NA | non-coding | downstream | 94388 | 23122954 ~ 23127564 (+) |
| G1270595 | NA | non-coding | downstream | 159137 | 23187703 ~ 23187954 (+) |
| G1270565 | LOC106590299 | non-coding | downstream | 183555 | 23212121 ~ 23218465 (+) |
| G1270563 | NA | non-coding | downstream | 231691 | 23260257 ~ 23260808 (+) |
| slc12a7b | LOC106590280 | other | upstream | 1168559 | 21729755 ~ 21794253 (+) |
| G1267949 | pck2 | other | upstream | 2121414 | 20840295 ~ 20841398 (+) |
| epb41l3a | LOC106590342 | other | upstream | 3282707 | 19598284 ~ 19680110 (+) |
| LOC110489737 | LOC106590377 | other | upstream | 4100301 | 18859697 ~ 18866106 (+) |
| mcmdc2 | mcmdc2 | other | upstream | 7068648 | 15885437 ~ 15895996 (+) |
| G1270643 | NA | other | downstream | 348742 | 23377308 ~ 23377560 (+) |
| G1270652 | NA | other | downstream | 378094 | 23406660 ~ 23408002 (+) |
| G1270669 | psme2 | other | downstream | 417272 | 23445838 ~ 23451494 (+) |
| LOC110489839 | LOC106590236 | other | downstream | 637905 | 23666471 ~ 23836438 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00019106 | NA | coding | CM030124.1 | CM030124.1 | 4268251 ~ 4282752 (+) |
