pigm (pigm)


Basic Information

Item Value
gene id pigm
gene name pigm
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23038180 ~ 23044436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562736.2
TCGgacatgttgcagcagtgtgtagaaTGGAGATCCCGTGATGTGATAAATATGCAGATGGGCATAGTCAGAGGGAGTATACAGTTGGGggtagagaaaacactgtgtcTGTACTCATGCAGTTGGGGATCCGAAGTGCCCTGTGAGACAGGTTGAGATTGCCAAAATTCGAGTGGGGCTGAACGTTtctatgctgaggcagtgaataGATTAGAGGATAGCGCAAGGGTGAGCCGGGAGTCCCCCAGTGAGTAGGCCTGAAGAGAGAGATCCAGAGAGGATGTGTTTTAGTAAGGTTGGATTTATTGCGTTTATAGCCATGGTGATCAACTGCACTGCACTGATGCAGCGGAAATCACATAAAATAGATGTGGTAGTTGCAGCAGCAGAGAAATATTTTGGGGTGAGAGATTTTACTCTAGATCTACAGGGCGTTTTGAGAGGTGGTGCCATCCTCCCAGGCCGACAGCCTAGTGTAGGATCGTTTAGGGCCAAAGTAGCGGGATGGGGTGCTGGGTTTTTGGGGATAGTGTATATGTGCAGGATTAGATGGTGGTACAATTTAGGATTTCCCATTCCCCTTTTCTTTTTGGGACCAAAATTTGCAATCTGCACTCCAAACTACGAAAGGCAGCAACACAGCGTCTAGTCTACCGGGAAAGCCACACGAAGAAGAAAACACTTCCTAGTTAACAACAGGAGCAGCAGCAACTTCTATTGCTAGTCAAATCGTGAAAAGTATTACACAATTGATAAAATGGGCAAGCGATCTAGTAAGATGTGAATGTATCTAACGTCAGCTTGCTAGCTACATGATAAGAAAATGACACGGCATGGCTTCATCCCTTGCATTACCTACCTAGCAATAGTGTAACGTTAATTACAGTAGCTAGCTTAGCTGCTAGCTGATTTATTGTCGAACAGGTTGGACAACTAACGCTATGGCTTCTATCATGGAACGTGTCCTGTCCAAGCTTATGAATAAAAATGTACTTTTCACTGTGTCGTTTCTCGTACGACTTGTTTTGGTCAGTTTTGGTGTCTATCAGGACAGAACTATGGTGGTGAAATACACTGATGTTGATTATCACGTGTTTACAGATGCGTCGAAGTTCATCACGCAGGGCCAGTCTCCATACCACAGATCCACCTACCGCTACACCCCTCTACTAGCATGGATCCTGACCCCTAATGTCTACCTCAGCCATGTCTTCGGGAAGCTTCTCTTCATCACATGCGACGTGCTCTCAGGCCACCTGATCTACCTTATCCTTCGCCAGCGGGGACTTAGCTGCAAGGCTGCCTGCCGTGTCTGCTCCCTGTGGCTACTCAACCCATTACCGGCCGGTGTGTCCAGCCGAGGCAACGCCGAGTCGGTCCTAACAGCCCTGGTTCTGGCCACACTGCTCTGCCTGGAGCTGAGGCAGATCCCCATGGCAGCCATCTTGTACGGCCTGGCCGTCCACATGAAAATTTACCCGGTGACTTATGCCCTGCCTATTGCCCTATCCCTACAGAGAAAGGAGaatgtggaggagaggggagtggggtggtggaggagagctCTTGGGTTTCCCCTCAGGCTATTGAATAAGGAGCTGTTTCTGTTTGCCGGTGTGGCCGGAGTGGTGTTCTGTGGATTGACTGTCCTGTTTTATAACATGTACGGCTGGGACTTCCTCCAGGAAACCTACCTGTACCACCTGACGCGGAGGGACATCCGCCACAACTTCTCCCCTTACTTCTACATGCTGTACCTGACTGCAGACAGCCCCTGGAGCCTGGCCCTGGGTCTGGCTGCCTTCCTGCCCCAGGCCCTGCTGCTGTTCCTGGTCTCCCTGGccttccacacagacctagccttCTGCTGCTTCCTCCACACCGCCATCTTTGTCTCCTTCAACAAAGTCTGCACTTCCCAGtACTTCCTGTGGTATCTATGTCTGTTTCCTCTCGTCCTACCTCGACTGACCCTGTCACCAAAACAAGGAGTAGAACTCTTGGCTCTCTGGTTTGCTGGACAGGGTATATGGTTGGCCCCTGCGTACTACCTGGAGTTTGAGGGATACAACACCTTTCTGCTCATTTGGCTGGCTGGACTGATGTTCTTGATCATTAACTCATTCATAATGGTACAGATTATAACCCATTACAAACCACCAGACACTACGCAGAGATTGAAAGCAGAGTGATATCCGGACAACTACTTGAACACTTAATTCTACGCTCCTTGGATGTAAGGGATCAAGTGAAGACATTTCACTAGTAGACAACTTAGTTGCTGATAATTGCAATGCATTTGTTATTTTGTCTGTATGGGAATTTtgtatatataaaacaaaaatacctGGCATGGA

Function

symbol description
pigm Predicted to enable mannosyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of glycosylphosphatidylinositol-mannosyltransferase I complex. Orthologous to human PIGM (phosphatidylinositol glycan anchor biosynthesis class M).

NR:

description
GPI mannosyltransferase 1

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K05284 PIGM; GPI mannosyltransferase 1 subunit M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562736.2 True 2357 mRNA 0.48 5 23038180 23044436
Loading

Neighbor

gene id symbol gene type direction distance location
LOC100136251 LOC100136251 coding upstream 1670 23028943 ~ 23036510 (+)
LOC110489808 LOC106590291 coding upstream 9614 22962812 ~ 23028566 (+)
lancl2 lancl2 coding upstream 822730 22152830 ~ 22215450 (+)
tgfbr1b LOC106590284 coding upstream 912810 22061784 ~ 22125370 (+)
LOC110489805 LOC106590283 coding upstream 984120 21996818 ~ 22054060 (+)
LOC110489812 rdh12 coding downstream 88392 23132828 ~ 23146739 (+)
LOC110489816 LOC106590246 coding downstream 113521 23157957 ~ 23162305 (+)
LOC110489814 LOC106590296 coding downstream 118259 23162695 ~ 23172409 (+)
LOC110489817 LOC106590247 coding downstream 144668 23189104 ~ 23203359 (+)
ptchd3a LOC106590298 coding downstream 160497 23204933 ~ 23211897 (+)
G1270416 NA non-coding upstream 134610 22903282 ~ 22903570 (+)
G1270414 NA non-coding upstream 137294 22900505 ~ 22900886 (+)
G1270390 NA non-coding upstream 176328 22861587 ~ 22861852 (+)
G1270389 NA non-coding upstream 176909 22860947 ~ 22861271 (+)
G1270489 NA non-coding downstream 5328 23049764 ~ 23049975 (+)
G1270541 NA non-coding downstream 78518 23122954 ~ 23127564 (+)
G1270595 NA non-coding downstream 143267 23187703 ~ 23187954 (+)
G1270565 LOC106590299 non-coding downstream 167685 23212121 ~ 23218465 (+)
G1270563 NA non-coding downstream 215821 23260257 ~ 23260808 (+)
slc12a7b LOC106590280 other upstream 1243927 21729755 ~ 21794253 (+)
G1267949 pck2 other upstream 2196782 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 3358075 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 4175669 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 7144016 15885437 ~ 15895996 (+)
G1270643 NA other downstream 332872 23377308 ~ 23377560 (+)
G1270652 NA other downstream 362224 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 401402 23445838 ~ 23451494 (+)
LOC110489839 LOC106590236 other downstream 622035 23666471 ~ 23836438 (+)

Expression

pigm(pigm) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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pigm(pigm) Expression in each Bioproject

Bar chart with 21 bars.
pigm(pigm) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network