LOC110489811 (LOC106590294)


Basic Information

Item Value
gene id LOC110489811
gene name LOC106590294
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23060684 ~ 23122826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562737.2
TCATTCAGAGGAATCCGCCACCTGAAACGCGAGGAAGTGAAGGCGACTCAATTCGGTATAAAGCATCAACCACATCTGCCTCGAGCTTTGAAAACATCAGTTCAGAGCTCTGGTAGACGTTCGCTGTATTTTCTCGAGGAATTATTATTGTTCACGTAGGAAGTGCCGTCTGTAAAATACCCATTCAATTTGAATGACCTATCTAACATTATACTGGAATTAAGTAATATTGACAGACCTTCTTGCGCACCTGTTACCTTAACGGAGCGCAAGACGATGATACCACCGGGAGACTGCATGTATGCGGgcaggaaaagaaggaagcccgTTCAAAAACAGAAACCGGCCACGGTGAGTGAGAAGTCCAACCCGTCAAAGAGGCACCGGGACCGCCTGAATGCGGAGCTGGACCGGCTGGCCAGCATGCTGCCCTTTTCCCCAGACATCATCTCCAAGCTGGATAAACTGTCTGTGCTGCGTCTCAGTGTCAGCTACCTCCGGGTCAAGAGCTTCTTCACAGTGACTCATGAGAAGCCGTCCAACAGAAAACATATCAGTCCATCCACCAACCCCCTCCCCGAGCCCAGAAAAGACAGCCTGCCTATGGCTATGGGCAACAGCATAACAGAGAGTGGGCTCCTTCTGGAGTCCCTGACTGGCTTTGCGCTGGTGGTGAGCAGCGATGGAATGGTCTTCTATGCCTCCTCCACCATCGTCGACTACTTGGGCTTCCATCAGacGGACGTGATGCACCAGAACGTCTTTGATTATATCCATGTAGATGACCGGCAGGAGTTCAGAAGACAACTCCACTGGGCCATGAACCCCAGCCAGCACGGCTCATCCCAGGACCACCATTCAGCCACAGAAACTGgaGAAGACTTTGTGGTGAGCAGCCTGTTCCATTCTCAGGAGGCGGGGGGAGTTGCTCCTGAGTTCTCTTCCTTCCTCAACCGCTGTTTCATCTCCCGTGTACGCTGCCTGCTGGACAGCACCTCTGGCTTTTTGACCATGCAGTTCCAGGGGCGGCTGAAGTTCCTCCAGGGACAGAAGAAGAAGTCGGGTTCGGGGGCCCTGCTACCCCCCCAGCTGGCCCTGTTCTGTGTGGCTGTGCCTCTTCTGCTGCCCTCCATCACAGAGATGAAGATGAAGGGCATGATGATGAGGGGCAAGCAGAAGAGCGGAGGGGGCATCATCCCTGCACTAGATCACGGtgagagagaggagcactTCAGGAGGCACTCTGGCAGTGTGGCGATGGTGGATGGCGGGGACCCGCTGCTCCTCAACTGCACCAGCCCCGGGGGGTCCCAGCAGCGCCTCAAGTACAAGTCGGAGGGGGGCTACTACGGCCAGGACGAGCCCCTCAACTACTGCAAGACCTCTATGGGCGGCGTCCCCCACCACAAAGGCCCAGGCCCGGACTCCCCGTGGCCCATGCGGCCTGCCTCAGGGACCGTCCGGGCTGGGCAGAGTGGCGGCTACATCCCCTCGAATCGACTCGGGAAGGCGGGCCACTACGGTAAGCCCTACCGCATGTCCCCCAGCATGTGTCATGGAGGAGGGCGAGGTGGTGAGGTCTACGTGCCCAAGATGTACGGGAGCCTCCAGACCCCCGACGGCTCGGACCCCTACTGCTTGGGAGAGGCGGTGAAGAGCGAGAATGGCTACGGCGAGTGCTACGATGGCCGCCTGCTGCCTGAGATGCCCATCAAGGTGGAGCAGGACTCTGACTCGGAGAACGGCTGTGACGCCTATGGCCGTCCGTGGACGTGCCGGGAGCCCGTGGACCGTCGCTACGGCAACGGCTACGGCGACAACAACAGCCTTCAGATGAAGTCGGAGGCGGACTACTACGAGCAGTACTCGCCGTGCCAGCGGGGCAAGGCGGGTATCAGCCCCATCAGCCCACCCTACAACAACGGCCACTTCCAGAACTATAATAATGTGGGGGGCGGCAGGCCCTTGAAGAGTGTGATTAACAAGGACCTGTCCCAGTTCAGTCCCCAGAGGCTGTCCCACTCAGACCCCCTCTGTAGCAGCCAGAGCATCAACTGCATGGACGTGTATGCAAGCGGCCCTGTGGAGCACAACAAGGGCTACATGCAGCAGGACTACAAGCAGGGCTACGAGTTCAAAGGTCACGGACTGCTCCATGCCATAAAGCGGGAACCCATGGACTCACCCCCGTGGTCGGATGGCAGCAGCAACGACATGAGTCACGCCATGGGGCACTCTCAGAGGAACGTTATGCCACACTGTGTGATGAACGCTGGGCAGCACAAAGCCAACCCCTATGTTTATATGCAATAGACATACATCCATCCCACACTTCCTCATTCACCAGCATAATACATTGGCAGAAGACATTCAGGATATGGCTCAGGTTTAAAGTCTAAGTGTTGAGACAATCAAAGAAAGGTATGGGGGGGATCCTGCCCCTGGATTTTGTTTTGATGAATGGAAGAAATTGTAGTTATTATCCGAAGCACTTTTGATGTAGTGATGCAAATGTTCTAGTCACATTtctgtttgtgttttgtgttgtctCCACCTGACTTCTCTGGTAGGCTGTTTAAAAATGTGATGGTAAACTGTATAAAATGTACACATTCGTGATGGGTGATACAATTTGCAATTATGTAAATATTTGTCCTCAAGAAATTATTTCCTGTCTAGAAGGTTTACCCAAAGAGGGTTGTGCATGCTCTTTTTAGTCAGGTTTTGTAAATCAATTGAAGGATCATTTGAATATGGTACGCATCAGTctgaatacactatatatacacaaaagtatgtggacaccccttcgaatttgtggattcggctatttcagccacacccgttgctgacaggtgtataaaatcgagcacacagccatgtaatctccatagacaaacgttggcagtagaatggccgtaCTGAAGGGCTCCGTGACTTTCAATGTTGCACCGTCATAGGgtgccacctttctaacaagtcaatttctgccctgctagagaaaCTTCAtaacaacagcacttacagttgatcagagcagctctagcagggcagaaatttgacgaggAAGAGAAGTAGGGAGATAATGGTCATATATTAGATCTCAAATCAAACCATTTTTGCAGCCCCAACTGTTTTAGGTCAGAGTTGTAATGATCTGATTACTTCTACAGATTATCCCTCCTGTTCATTACAGTACAAATaattgtgtttattttatttatgttcaTTCAACCTTCATTTCGACAGGGAGTCTAGCGAAATgttaagccacacaagctcacagaacgggaccaccaggTGCTGAAGTGGGTAGagcataaaaattgtctgtcctcggttgcaacactcactaccgagttccaaactgcctctggaagcaacgtcagcacaagaactgttcatggccgagcagctgcacacaagcctaagatcaccatgtgcaatgccaagtgttagctggagtggtgtaaagctcgccgccattggactctggagcagtggaaatgccttATCTGGAGTTttgaatcacgctttaccatctaGCAGTCCGGAGGACGAATCtgtgtttggcagatgccaggataacgctacctgccccaatgcatagttccaactgtaatgtttggtggaggaggaagaatggtctgtggctgtttttcatggtttgggctagtcCCCTTACGC
>XR_005036061.1
TCATTCAGAGGAATCCGCCACCTGAAACGCGAGGAAGTGAAGGCGACTCAATTCGGTATAAAGCATCAACCACATCTGCCTCGAGCTTTGAAAACATCAGTTCAGAGCTCTGGTAGACGTTCGCTGTATTTTCTCGAGGAATTATTATTGTTCACGTAGGAAGTGCCGTCTGTAAAATACCCATTCAATTTGAATGACCTATCTAACATTATACTGGAATTAAGTAATATTGACAGACCTTCTTGCGCACCTGTTACCTTAACGGAGCGCAAGACGATGATACCACCGGGAGACTGCATGTATGCGGgcaggaaaagaaggaagcccgTTCAAAAACAGAAACCGGCCACGGTGAGTGAGAAGTCCAACCCGTCAAAGAGGCACCGGGACCGCCTGAATGCGGAGCTGGACCGGCTGGCCAGCATGCTGCCCTTTTCCCCAGACATCATCTCCAAGCTGGATAAACTGTCTGTGCTGCGTCTCAGTGTCAGCTACCTCCGGGTCAAGAGCTTCTTCACAGTGACTCATGAGAAGCCGTCCAACAGAAAACATATCAGTCCATCCACCAACCCCCTCCCCGAGCCCAGAAAAGACAGCCTGCCTATGGCTATGGGCAACAGCATAACAGAGAGTGGGCTCCTTCTGGAGTCCCTGACTGGCTTTGCGCTGGTGGTGAGCAGCGATGGAATGGTCTTCTATGCCTCCTCCACCATCGTCGACTACTTGGGCTTCCATCAGacGGACGTGATGCACCAGAACGTCTTTGATTATATCCATGTAGATGACCGGCAGGAGTTCAGAAGACAACTCCACTGGGCCATGAACCCCAGCCAGCACGGCTCATCCCAGGACCACCATTCAGCCACAGAAACTGgaGAAGACTTTGTGGTGAGCAGCCTGTTCCATTCTCAGGAGGCGGGGGGAGTTGCTCCTGAGTTCTCTTCCTTCCTCAACCGCTGTTTCATCTCCCGTGTACGCTGCCTGCTGGACAGCACCTCTGGCTTTTTGACCATGCAGTTCCAGGGGCGGCTGAAGTTCCTCCAGGGACAGAAGAAGAAGTCGGGTTCGGGGGCCCTGCTACCCCCCCAGCTGGCCCTGTTCTGTGTGGCTGTGCCTCTTCTGCTGCCCTCCATCACAGAGATGAAGATGAAGGGCATGATGATGAGGGGCAAGCAGAAGAGCGGAGGGGGCATCATCCCTGCACTAGATCACGGtgagagagaggagcactTCAGGAGGCACTCTGGCAGTGTGGCGATGGTGGATGGCGGGGACCCGCTGCTCCTCAACTGCACCAGCCCCGGGGGGTCCCAGCAGCGCCTCAAGTACAAGTCGGAGGGGGGCTACTACGGCCAGGACGAGCCCCTCAACTACTGCAAGACCTCTATGGGCGGCGTCCCCCACCACAAAGGCCCAGGCCCGGACTCCCCGTGGCCCATGCGGCCTGCCTCAGGGACCGTCCGGGCTGGGCAGAGTGGCGGCTACATCCCCTCGAATCGACTCGGGAAGGCGGGCCACTACGGTAAGCCCTACCGCATGTCCCCCAGCATGTGTCATGGAGGAGGGCGAGGTGGTGAGGTCTACGTGCCCAAGATGTACGGGAGCCTCCAGACCCCCGACGGCTCGGACCCCTACTGCTTGGGAGAGGCGGTGAAGAGCGAGAATGGCTACGGCGAGTGCTACGATGGCCGCCTGCTGCCTGAGATGCCCATCAAGGTGGAGCAGGACTCTGACTCGGAGAACGGCTGTGACGCCTATGGCCGTCCGTGGACGTGCCGGGAGCCCGTGGACCGTCGCTACGGCAACGGCTACGGCGACAACAACAGCCTTCAGATGAAGTCGGAGGCGGACTACTACGAGCAGTACTCGCCGTGCCAGCGGGGCAAGGCGGGTATCAGCCCCATCAGCCCACCCTACAACAACGGCCACTTCCAGAACTATAATAATGTGGGGGGCGGCAGGCCCTTGAAGAGTGTGATTAACAAGGACCTGTCCCAGTTCAGTCCCCAGAGGCTGTCCCACTCAGACCCCCTCTGTAGCAGCCAGAGCATCAACTGCATGGACGTGTATGCAAGCGGCCCTGTGGAGCACAACAAGGGCTACATGCAGCAGGACTACAAGCAGGGCTACGAGTTCAAAGGTCACGGACTGCTCCATGCCATAAAGCGGGAACCCATGGACTCACCCCCGTGGTCGGATGGCAGCAGCAACGACATGAGTCACGCCATGGGGCACTCTCAGAGGAACGTTATGCCACACTGTGTGATGAACGCTGGGCAGCACAAAGCCAACCCCTATGTTTATATGCAATAGACATACATCCATCCCACACTTCCTCATTCACCAGCATAATACATTGGCAGAAGACATTCAGGATATGGCTCAGGTTTAAAGTCTAAGTGTTGAGACAATCAAAGAAAGGTATGGGGGGGATCCTGCCCCTGGATTTTGTTTTGATGAATGGAAGAAATTGTAGTTATTATCCGAAGCACTTTTGATGTAGTGATGCAAATGTTCTAGTCACATTtctgtttgtgttttgtgttgtctCCACCTGACTTCTCTGGTAGGCTGTTTAAAAATGTGATGGTAAACTGTATAAAATGTACACATTCGTGATGGGTGATACAATTTGCAATTATGTAAATATTTGTCCTCAAGAAATTATTTCCTGTCTAGAAGGTTTACCCAAAGAGGGTTGTGCATGCTCTTTTTAGTCAGGTTTTGTAAATCAATTGAAGGATCATTTGAATATGGTACGCATCAGTctgaatacactatatatacacaaaagtatgtggacaccccttcgaatttgtggattcggctatttcagccacacccgttgctgacaggtgtataaaatcgagcacacagccatgtaatctccatagacaaacgttggcagtagaatggccgtaCTGAAGGGCTCCGTGACTTTCAATGTTGCACCGTCATAGGgtgccacctttctaacaaggcagaaatttgacgaggAAGAGAAGTAGGGAGATAATGGTCATATATTAGATCTCAAATCAAACCATTTTTGCAGCCCCAACTGTTTTAGGTCAGAGTTGTAATGATCTGATTACTTCTACAGATTATCCCTCCTGTTCATTACAGTACAAATaattgtgtttattttatttatgttcaTTCAACCTTCATTTCGACAGGGAGTCTAGCGAAATgttaagccacacaagctcacagaacgggaccaccaggTGCTGAAGTGGGTAGagcataaaaattgtctgtcctcggttgcaacactcactaccgagttccaaactgcctctggaagcaacgtcagcacaagaactgttcatggccgagcagctgcacacaagcctaagatcaccatgtgcaatgccaagtgttagctggagtggtgtaaagctcgccgccattggactctggagcagtggaaatgccttATCTGGAGTTttgaatcacgctttaccatctaGCAGTCCGGAGGACGAATCtgtgtttggcagatgccaggataacgctacctgccccaatgcatagttccaactgtaatgtttggtggaggaggaagaatggtctgtggctgtttttcatggtttgggctagtcCCCTTACGC

Function

NR:

description
uncharacterized protein LOC109899381

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K09094 AHRR, AHH; aryl hydrocarbon receptor repressor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562737.2 False 3687 mRNA 0.52 9 23060684 23122826
XR_005036061.1 True 3617 mRNA 0.52 10 23060684 23122826
Loading

Neighbor

gene id symbol gene type direction distance location
si:dkey-225n22.4 LOC106590290 coding downstream 104920 22907916 ~ 22955764 (-)
LOC110490829 LOC106590245 coding downstream 161443 22898112 ~ 22899241 (-)
LOC118938910 NA coding downstream 263705 22795564 ~ 22796979 (-)
LOC110489807 LOC106590288 coding downstream 384298 22644341 ~ 22676386 (-)
LOC110489790 LOC106590241 coding downstream 613989 22367531 ~ 22446695 (-)
LOC110489813 LOC106590295 coding upstream 24043 23146869 ~ 23156952 (-)
pks1 LOC106590299 coding upstream 89291 23212117 ~ 23221568 (-)
LOC110489819 LOC106590300 coding upstream 98866 23221692 ~ 23242314 (-)
acbd5a acbd5 coding upstream 131060 23253886 ~ 23275145 (-)
LOC118938792 NA coding upstream 212646 23335472 ~ 23337723 (-)
G1271201 NA non-coding downstream 33888 23023305 ~ 23026796 (-)
G1271085 NA non-coding downstream 216855 22843598 ~ 22843829 (-)
G1271082 NA non-coding downstream 219772 22840486 ~ 22840912 (-)
G1271074 NA non-coding downstream 226314 22833205 ~ 22834370 (-)
G1271047 NA non-coding downstream 255109 22801315 ~ 22805575 (-)
G1271285 NA non-coding upstream 53044 23175870 ~ 23176099 (-)
G1271287 NA non-coding upstream 55166 23177992 ~ 23178191 (-)
G1271297 LOC106590247 non-coding upstream 73626 23196452 ~ 23203364 (-)
G1271299 NA non-coding upstream 81761 23204587 ~ 23204788 (-)
G1271370 NA non-coding upstream 247622 23370448 ~ 23370759 (-)
G1269265 NA other downstream 1257332 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 2100595 20958372 ~ 20960089 (-)
G1267452 NA other downstream 2770011 20290350 ~ 20290673 (-)
G1267414 NA other downstream 2792196 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3606914 19435018 ~ 19453770 (-)
G1271421 NA other upstream 590529 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 2923422 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3388699 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3432142 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3447452 26566351 ~ 26694581 (-)

Expression

LOC110489811(LOC106590294) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110489811(LOC106590294) Expression in each Bioproject

Bar chart with 21 bars.
LOC110489811(LOC106590294) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network