LOC110489812 (rdh12)


Basic Information

Item Value
gene id LOC110489812
gene name rdh12
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23132828 ~ 23146739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944075.1
TTCCGCATTCATCAAATTATCTGCTAATGAGTAGAATTTTACTGTTGACATGCTGTCGAAGCTTGGCTGTAAATCAGATGCGAAATATTGGATGCAAATGCGGGTGTATTGATTTCAGTATAGGCGAATCAATTGAGGATTAAGAGTTCGGAATTATTTCAGTACCATCATTTGTAGCTCTGCTTCGAAATGCCGTTTGGATATCTCTTCCGGAGAACATGGTCATCCACAGACAGACTTGATGGCAAAACAGTGCTCATAACTGGAGCCAACACTGGTATTGGCAAAGAGACAGCGCTGGACCTGGCAAAGAGAGGGGCCAGGATAATCATGGCCTGCAGAGACATGGAGAAAGCAGAGGGGGCCCTGAAAGAAGTCATAGAAGGCTCTGGCAGCCAAAATGTTGTCATCAAGAAGCTTGATTTGTCAGACACCAAGTCCATCCGCCAGTTTGCAGAGACCATTAACAAGGaaAGGAGACAACTCAACATCCTCATCAACAATGCTGGCGTCATGGTGTGTCCGCATGGGAAAACAGCTGATGGATTTGAAATGCAGATTGGCGTCAACCACATGGGTCACTTCCTGTTGACCCACTTATTGGTTGACCTGATCAAAAGGTCGACCCCGGCCAGGATCATCAATGTGTCCTCCATGGCTCATTCCTGGGGCACCATCAACCTGGACGACATCAACAGTGAGAAGGGCTATGACAAGAAGAAAGCGTACAGCCagagcaagctagccaatgtccTTTTCACCCGCTCCCTGGCCAAGAAGCTACAAGGCACTGGTGTGACTGCATACTCCCTCCACCCTGGCGTGGTTCAGACTGACCTGTGGCGGCACCTGAGCGCACCTCAGGCAGCTATCATGAAGATGATCAGTCCCTTCACCAAGACATCCGTGCAAGGAGCTCAGACCACTATCTACTGTGCTGTGGCACCTGAACTGGAAACCGAGAGTGGTGGAtattacagTGACTGTGCACCAGCCAACTGCTCAAGCTCTGCTTCAGACGATGACACGGCCCAGAAACTGTGGGAGCTAAGCTGCCGGATGCTTTCTCTGTCATGGGATTGAATAACTCTGAAAAGGTGTATGGTTTACATTTTGAGATGTATGAGCACTGAAGAATACAACAAATGTACAGCATCTTAAATGAAAGTCCTTTGTCCCacgcaaagcaccatcacacctcatccATACTTcatggtgagaaccacacatgagATTATTCACCTACTCTTGTGTTTCACAAAGAcctggcagttggaaccaaaaatctcaaatttggactcatcagaccaaaggacagatttccactggtctaatgtccattgctggtgtttcttggcccaagcaagtctctttttattattggtttctttgcagcaatttgaccatggccTGATTCACACcgtatcctctgaacagttgatttggagatgtgtctgttactgaggtgcagttaactctaatgaaattattctctgtagcagaggtaactctgggtcttcctttcctgtggcggtcctcatgagagccagtttcatcattgcgctttATGGTTTATGCGACTGCACATTAAGACattttaaaagttcttgaaatgttcagaattgactgaccttcatgtcttaaagtaatgatggactgtcatttcactttgcttatttgagctgttcttgccgtaatatggacttggtcttttaccaaatagggctattttctgtataccaccctaccttgtcacaacacaactgattggttcaaacgcagtaagaagaaaataaattccacaaatgaacttttaacaaggcacacctgttaattgaaatgcattccaggtgactaccccatgaagctggttgagagaatgtgaaaagctgtcatcaaggcaaagggtggctactttggacaatatcaaatcaaaaaatacattttgatttgtttaacacttttttggttgctacataattccatgtgtgtcatttcatatgtcttcactattattctacaatgtagaaaatagtaaaacaattaagaaaaaccctggaatgagtaggtgtgtccaaactttttaatgGTACTGTATACCCAATATAACTTGAATGCCTAATGAGCTCAGTTCAACTGCCGAACACCCGGCAAAACCAAAAATATGAGATTGTTTTACTCTAATgcttgtaaacaatgtaatttttaacaaacactgtatagcctcaaaccatggttaaaactataatattGATACTATGGGTGGTCAGTCCTTGCAAATAGCTCTGAATTTGAGAATGGTGACATtaacccagccccatccctcagctcttTACTAAATCAGTGGCGGGATTGTTGCTTTCTTACTGTTTCAAATAGACTTCCCCTTTAGGGGTATTTACCTACTTCGGATTTCATAATGAGTTTCCACTGTATAGTGGctttcaaataatattttatacgtttttaaaaaaaaacattctaacTAAAACAGTTTTCTAAAATGATGCAATAATTTTTCTAAACACTTACAATTACAAAGGGCTGCCTTTAGCATCATGTCATTTCCTTGTTAAATGTGGTCTATTTttctattatgacagagcatTAAAATATCTATGTACCAGGA
>TU1451171
TAGAATTTTACTGTTGACATGCTGTCGAAGCTTGGCTGTAAATCAGATGCGAAATATTGGATGCAAATGCGGGTGTATTGATTTCAGTATAGGCGAATCAATTGAGGATTAAGAGTTCGGAATTATTTCAGTACCATCATTTGTAGCTCTGCTTCGAAATGCCGTTTGGATATCTCTTCCGGAGAACATGGTCATCCACAGACAGACTTGATGGCAAAACAGTGCTCATAACTGGAGCCAACACTGGTATTGGCAAAGAGACAGCGCTGGACCTGGCAAAGAGAGGGGCCAGGATAATCATGGCCTGCAGAGACATGGAGAAAGCAGAGGGGGCCCTGAAAGAAGTCATAGAAGGCTCTGGCAGCCAAAATGTTGTCATCAAGAAGCTTGATTTGTCAGACACCAAGTCCATCCGCCAGTTTGCAGAGACCATTAACAAGGGTGAGGCAGAATAAGACATGACTTGAAACTTTTTTCAGTTGCTTAGTTACTCCACATGGAATCTCTATAGGGAAAATGCATTTGATTTCATAAACTTTTT

Function

symbol description
rdh12 Is expressed in several structures, including brain; eye; gut; heart; and skeletal muscle cell. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 13 and Leber hereditary optic neuropathy. Orthologous to human RDH11 (retinol dehydrogenase 11) and RDH12 (retinol dehydrogenase 12).

NR:

description
retinol dehydrogenase 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944075.1 False 2629 mRNA 0.42 8 23132828 23146739
TU1451171 True 541 TUCP 0.43 3 23132859 23136721

Neighbor

gene id symbol gene type direction distance location
pigm pigm coding upstream 88392 23038180 ~ 23044436 (+)
LOC100136251 LOC100136251 coding upstream 96318 23028943 ~ 23036510 (+)
LOC110489808 LOC106590291 coding upstream 104262 22962812 ~ 23028566 (+)
lancl2 lancl2 coding upstream 917378 22152830 ~ 22215450 (+)
tgfbr1b LOC106590284 coding upstream 1007458 22061784 ~ 22125370 (+)
LOC110489816 LOC106590246 coding downstream 11218 23157957 ~ 23162305 (+)
LOC110489814 LOC106590296 coding downstream 15956 23162695 ~ 23172409 (+)
LOC110489817 LOC106590247 coding downstream 42365 23189104 ~ 23203359 (+)
ptchd3a LOC106590298 coding downstream 58194 23204933 ~ 23211897 (+)
mastl LOC106590301 coding downstream 101356 23248095 ~ 23253786 (+)
G1270541 NA non-coding upstream 5264 23122954 ~ 23127564 (+)
G1270489 NA non-coding upstream 82853 23049764 ~ 23049975 (+)
G1270416 NA non-coding upstream 229258 22903282 ~ 22903570 (+)
G1270414 NA non-coding upstream 231942 22900505 ~ 22900886 (+)
G1270595 NA non-coding downstream 40964 23187703 ~ 23187954 (+)
G1270565 LOC106590299 non-coding downstream 65382 23212121 ~ 23218465 (+)
G1270563 NA non-coding downstream 113518 23260257 ~ 23260808 (+)
G1270639 LOC106590307 non-coding downstream 228051 23374790 ~ 23375273 (+)
G1270640 NA non-coding downstream 228656 23375395 ~ 23375630 (+)
slc12a7b LOC106590280 other upstream 1338575 21729755 ~ 21794253 (+)
G1267949 pck2 other upstream 2291430 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 3452723 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 4270317 18859697 ~ 18866106 (+)
mcmdc2 mcmdc2 other upstream 7238664 15885437 ~ 15895996 (+)
G1270643 NA other downstream 230569 23377308 ~ 23377560 (+)
G1270652 NA other downstream 259921 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 299099 23445838 ~ 23451494 (+)
LOC110489839 LOC106590236 other downstream 519732 23666471 ~ 23836438 (+)
G1271852 LOC106584099 other downstream 1099684 24246423 ~ 24250283 (+)

Expression


Co-expression Network