LOC110489813 (LOC106590295)


Basic Information

Item Value
gene id LOC110489813
gene name LOC106590295
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23146869 ~ 23156952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562739.2
TCGAGCACCTTCTATCTGAGCTGAGTTTACACTTGAAGTTAAGAAACAAGTGCATGCATTTCAGTGTCCAGCTGGTGTGACAGACAGCCAGGatgaggatggaggaggaagagggagccATTGCAGTGGTTGGCATTGGATGCAGCTTCCCTGGAGGTGAGGGGCTTGACaatttctggaaggttcttctgGAAGGAAAGAACTGTGCATTGCCAATCCCTAACGAGAGGTTTAACAGTACTTACTGGTATGATGCTGACAACAGCAAACCTGGAAAGTCTCACACTAGCAAAGCTGCTCTCATAGACGGCTTTAACGAACTAGACCTGAGGTTTTTTGGTGTCACCGATGCTGAGGCCGACTACATGGACCCCCAGCAGAAACTCTTGCTGCATTGCACCTATAGGGCACTAGAGAATGCTGGGATGCCAATGGAGAAAGCTAGCGGAACTAGAACTGGAGTATACCTagGACTAATGAACAGAGACTACGATCTCACAACTGCTCAGTACAATCCAGGCTTGACTAACCATTGGAGTGGCACTGGTAAAGCCATGAGTATTGCAGCCAACCGGATATCCTACACCTTCAACCTCACTGGTCCATCAGTTGCCATAGACAGCGCCTGCTCATCATCTCTTGTGGCTCTGCACTTTGCTTGTCAAGCCATAAAACAAGGTGACTGTGAAATGGCTCTCTGTGGCGGTGTCAGCTGTATCATAGAGCCACAAGTCTTTGTCGCTCTCAGCAAGGCAAAGATGATTTCCCCTGAAGGCACCAGCAAACCTTTCTCCAGCAGAGCAGATGGCTATGGCAGAGGAGAGGGCTGTGGGATTATTCTGCTGAAGCCACTGAAACAAGCCTTGAAAGACTGTGACCATGTATGGGGCATCATAAGCAAAACTGCAGTAAACCAAGATGGCCACACTGTCTCTCCAATCACCAAGCCATCCATGGTCCAGCAAGAGGAGCTTCTCCGCAGAATCTATTCACAGTCTGACCTGTCAACTGTCCAGTACATAGAGGCTCATGGGACTGGAACTCCAGTGGGGGATCCCATAGAAGCAGGCAGCATCTCCAAAGTCATTGCCAAAGCCAGACCCCCAGGTTCAGAAACACTCCGCATCGGCTCTGTGAAAGGCAACATTGGACACACAGAATCTGCAGCTGGAGTGGCAGGTCTAATCAAGGTACTCCTAATGATGAAGCATGAAATCATTGTCCCTTCACTGTTCTACTCTGAGGACAGTGCCAGTATAGACGCTAAAGCCTTAAACATAAAAGTTCCCACTAAAGCAGAAAAGTGGGGAAATGCAGGCTCGGTCGAACGGATTGCAGGGATCAATAATTTTGGTTTTGGAGGCACAAATGCCCACACAATTGTCAAACAGTACAACAACTCTCACACCCAAACAGCCGGGGTTGATAGGTCTTATGAGTATTTTATCCTCTCAGCAGCCTCAGAAAAATCCCTTACCATGATGGTACAGGACACAGCTGAACAGATAAGTGGAGACAAAACAGTGGAACTCCAGGGTCTGTCATATACATCAGCCTGTAGAAGAAGCCACATGAAACATAAATACAGGAAGGCATTCACAACATCCTCTCTTGTTGATCTGAGAAACCAGCTGAAATCTGCTTTGAACAAAAAGATTGCCCCCTCCAAACTAGATCCAAAGTTAGTGTATGTTTTCTGTGGGAATGGTGTGGCCTACCAAGGCATGTGCAAGCAGCTCCTGAAACAGGAACCAGTGTTCAGAGAAAAGATCAAGGAGGTTGAGGCGCTTTTTCAAATGTACCAAAGAATGTCcatcacagagagactggaaaGTGCATCAGTTGATGACGACTTTTCAAAACCAGATGTTGTCCAGCCCCTCCTCTTTGCCATTCAGGTTGGCATTGCCAGTCTCTTCAAGCACTGGGGCATCAAACCAGATGCCATTCTTGGCCACTCTGTTGGAGAGGTTGCTGCTGCCCACTGCTCTGGTCTGTTGTCCCTTGAGGATGCAGTGAAGGTGATTTATTTCCGCAGTACTCTGCAGAATAAAGTCACAGGAGGGAAAATGCTTGTGGTCAGTAACATGGCCGTGTCAGAGGTCTTGAAACTCCTTCCCTCCTACTTAAATAAGGTTTGCCTGGCTGCCTCCAACAGCCCACAGTCCTGCACCCTTGCAGGTGATGCTGATGCTATAGACAATCTGTATCAAAAGCTAAGCAGTTCAGTCAACAGTAAGAATCTGTTCCTCCATGTTCTGGATGTCCCTGCTGCATACCACAGCCAAATGATGGATCCCATCCTCTCTCAAATAGAGGACAGTATTGGCTCTTTACAGGTGAATCATGTTGAGACAGAATTGTTCTCCACCGTGACAGGAAAGGCAGTAGAGCAGCCAGACTTTAGCACAGGCAAATACTGGGCCAGGAACATTCGAGAGCCTGTTTCATTTGAACAGGCAGTGAGATCAGCAACCAAAGACAAGAAGAATGTGGTCTTTGTAGAGATAGGCCCTAGAAGGGCTCTACAAAGGAACATCCAGGAGACTCTGGGAAATGAGACACAAGTGCTCACGTCAGTGCAGCAAAATAAAGACCATGAGACAATGCTGGACACTGTATCCAAACTGTTTGAGTTGGGGGTTCAGGTAGATTGGGACAAGTTCTACAGAGGTTATGAGACATCCCCAACACCTACCCCAAGGTATCAGTTCGATTGTGTGAAGAAAGATGTCATCTTTGAGGCAGCACAGAAAGGTACATCGGGCAGTCATCCTGTGTTAACTCAGACAGGCAATGATGGAAAAACCTTCAGTTGTGATCTGGCCTCAGCCTCAGTGGCTTACCTGCAGGACCATAGAAACAATGATGTTGCCATTGTCCCTGGTGCCCTCTACGCGGAGTTGGGTTTGGCTGCCTTCATGGCCAGTTCCAAATCAAAGGTGCCACTCAACATGCTGCAACTCAGTGTCAGTTTTCAGAGTCCATTTATCATTGCACCAAATTCTCCTGAGATGAGTGTCAAACTGGATCACTTTGAAAACGAGACAACGTTTAAGATACAATCTCCTACAGCAACGTATGCATCAGGCAGCATATCATGCAAGCAAGGGAGGTTGGCTGAGGAACAGTACATCTCTCTAGACTCAGTTTACAAGCGATGCACATCAACTATGAGTACTGATTACTTTTATGATTACCTAAGTAAGAGAGGGTTTCAGTATGGTTCTGTTTTCAGAAACAGGGGAGATGTGCACTATGGTGCAGACTTGATGGAAGCCATCTCTGTTGTAACTGTCCCTGAAGAACTACTGCCTCAGTTGCATGATTTCTGCATTCACCCTGTAGTGCTAGACTACTTGCTACAACTGACTCCAATCACAATAGTGAATGCATTCATGGCAAGGCCTGGCTTCCCTGCAGAAATAGGCAGTTTGACTGTTCACGAACCCCTGCAGCCTGAAATGGTTCTTTATTTGAGAGCCGCAAATGTTGCAGCAGACCATTTCGAAGTATCTGGCTGTTTCACCGACAAAGCAGGTCGGGTCTTGGTTGAACTGAAGCATGTCATAGTCAAGTATCTTGGGAGCCAATCTAATGTTGTTGAAGAGTACTTCTTCCACAATGACTTCAGTGTTGTCTCTGATGACTACAAGCCCATTAATAAACCCAAGGCATTGGTTTTCGCTGACCAGATAGGTGTATCTGAAGCCATGCAAAAACATTTGAGCTCACAGTCGCAATACATCTCTTTCACACATGCCAATGATCTCTTGAGCCGTGGATTCAAAGCGCTGTTGTCAAAATTCAAAATCTCAGACTTGAAAAGCTTTGCAGAAATCTTGTTTGTGTGGAGCAATGACAATGTTACCTCTCATGAAACAGAGGCTATCCTGGAGAACATGGTAAACTGCTGTGAGATGTTCAGACAAATAGTCTTGGAACTGAAGGCTATGAAATTTCCAAATTCCATCAGAGCAATAACCTACCGGTCAGCAGAGAACACAGTGGACCGCATCAGCGCAGGCTTTGCCCTCTCAGGCATGACTAGATCATGCGCTGCAGAAATGTCAGATCTTTCCTTCCAGCTGATTGACATCAGCTCTGTCTCTACAGAGGACATCagagctctgtctcaggttcttgACTCATTCCCATGCAGCCAATACCCAGAATTGGTGGTGAAAGATGGACAGATTCTAAAACCTTACATAGTGCACACTCCCACTGAAAGCAGTGACAACTCACAGGAAAATGTCCACTCTTTGAAGTCTGAGGAGTTCATCCttcagactgctaacccctaCAGAATGACTAGCTTGTCTGCCATTCCTTGTGATGTTGAGCATAAGCACATTGAGGAGAATTCAGTTGAGATTCAGCTCAGTAAGATTTGTGTTCATTCTTCTGACTACTTTCCGGTCAGTGTCTCTGACATGAACTATGGCCCGACAATGTACTGGAACAAACACACATCTCAGGACCACCAGCTTTTTGCTCTAGACTTCAGTGGCACTGTCACAGCTGTAGGGAAAGAGGTGAGCAAACTGAAAGTGGGGGAGCATGTAGTTTCATGTTATCCGACTGCTGCATCTTCTAAGATTGTGATTCCTGAAGCAGCGTGCTACAAGACAAAGAGGCTCACTTTTCTGAAGGAGGCACCCTGTGTGTCCTACTTTGTACTTGCATGGGAAGTCTTGCATCGTGCATTACCCAAAGTCAAACAACAGAGGTTGGGCATCATCTCATCCGTTCCTGACTCAGGTTTGACAAAGGTCTTAGCCCAAACTGCAACAAAATCAGGATGGAATAACATTGTTCTGCCACAGTTTAGTGATCAGCTTCAAAATGTGAACAAGCTTGATGCATTTGTCCTTTTacctccatttgacaaatctcAGTTTGAAAAAGCATGCAATGTTTCCGGTGTGAGACACATTGTTGCTGTATGTGAAAATGAGTGGCAATCCTCCATCTCACAAAATGGCTTCAGATGTGGCAATGACAATGTTCGCATTCAGACTGTTCAAATGTCTAGTACATTGGAAAAGGGATCTATCAGAGCAGAGAAGTCTCACATTTACCATTGGCTCAAATCAATGCATTTGGACAAGAAGTCTTTAGATTTCGAAACCACCATCTTTCAGAGAGTGTCATCCGGTAGCATTGACTTCCTGCCTGTTGAAGAGTCTGAATCATACTTCAGCTCAAAAACCCTGCCTTTTGTGGCACTGAGTAAAGATGATTCCAAAGGCACACTGTCCAACATTAAGTTGTTGCCTAAACCAAACCAGCTTTTCCAGAAAAACTCTGTGTACATTGTCACAGGTGGTCTAACTGGACTAGGGTTTGAAACAGTGAAGTTTATTGCACAGCGAGGAGGAGGGTATATTGTCATTCTTTCCAGAAGCAGTCCCTCGACCGACTTACAGCAGGAGATAAGTAACATTGAGAGTCAGTCTGGCGCCACAGTTGTCAGCTTGCAGTGTGATGTTTCAATCTCTGCACAAGTAGTAAATACCGTTATTGCGATTAAGGAACGTTTCCCCTCTTGTCCAATCAGAGGGGTCTTCCACAGCGCCGTCGTCCTGCATGATGGCCTGATTGAAATTCTTGACAAATCTCTCTATGAGAAAGTCCTGAAGCCCAAAGTGAATGGAGCTCTGAATCTGCATCACGCCACAAAACTCTGCAAGTTAGATTACTTTGTGTGTTACTCCTCCATCTCTGCCTTTATTGGCAATGCAGCACAAACAAACTATTGTGCAGCCAACTCCTTCTTGGACACATTCTGTCAGTACAGGCGAAACATTGGACTTGCAGGACAGTCCATAAGCTGGGGAGCTTTGAACCTTGGTCTCTTGCTGGACAAAGACCATTTCCAAAGATTTCTGGCGGCAAAGGGGATGATGGTCATGGGGGTAGCAGAAATCCATGAGAGCCTAGAACAATGCCTTCTGCTGAACAGACCACAACAGGTTGTCTGCAAGTTCAGTTTCAAAAACCTGATGCGTCATGTTCTTGCTCATAATGCCTCCCTAAACATACGTTTAGGCGCACTGGTGGATGAGGGGATAACAAAAGAAAAGGGGGAAGTTGCAGGATATGACCAAACTACCGTGTCCATGTCACCAAGTGACTACGTCAAGTCGGTGCTCAGGGAAACGCTTGGTGTTGAGAATGATGAGCTGAATGACGATTCTTCTCTCACCGCATTAGGCATAGACTCAATGCTAGCCATGACTTTGCAGAATCTTCTCTTTCAAGACAGGGGTGTGAATGTTCCCCTGGTTAAATTACTGGACCCCAACAGCACACTGTCTACTTTGGTAGCAATGCTAAAAGAGGGTGCAAACCAGGAATCTGAGCTTGGTGATGACCTTGCCTTGGATCTGATGGAAAAGAATGAGGAAGAAAGTTACATGTCTACTGTACTTTAGAGATCAATCAAATTTGATTATTCAATCAAATGTGAATTATTTAAAGCCCCCATGCAGTCTTTATGATTACATTTTTTGAATCACTGTATGTCTAATatatcactgtgtgtgtttgtttcatgaCAATAACTCCAAACATATCTTTTTTTAATCATTGATTTCCCTGAGCCTCCTTTTGCCATTGAAATGCTCAGTCAGATAGTGTAGGCGTCTTGATTTGGTCTTGATGTTTAGCCATACAGAAGGTTAACCTTAGAAATGTTCATATTATTTGAATGATTAAATATCAATACTGCATACATTGTTACTTGAATAAAAATAATTTATGGAAAACTAGTGCAATATAATATGGGATATTTACAAGAGAAGACAAGTGTTCAAAATTCCTATATCAGGCTGaattattttcactatttttctTTCATGGTAAAACGTTGGCAAtctttcaaatatatattttaaattttgACAAAATACATATGTATTATCCTGACATTATCAACTTTTGTTATGTTTTAATTATAGTTTAATCTGCCATTTTTATTTCAACCTTTCTGAGTATCATAGTCAATGTTAGATAATCTTAGAAGTAGTGTATAATGCTTCGTTCATCTCATGCTATTCTTGTTCATTCTGGTTGTGTTCAATAATCTATGTAGTGTGCAGCAGGTGGAGTAGCAATGAAATATCAGTCAAATATGACAACTAAAGATTGGAATGTTAAAAATGGAGCAGAGGTTTAGTGATCTGGAAAAG

Function

NR:

description
probable polyketide synthase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562739.2 True 7196 mRNA 0.44 6 23146869 23156952

Neighbor

gene id symbol gene type direction distance location
LOC110489811 LOC106590294 coding downstream 24043 23060684 ~ 23122826 (-)
si:dkey-225n22.4 LOC106590290 coding downstream 191105 22907916 ~ 22955764 (-)
LOC110490829 LOC106590245 coding downstream 247628 22898112 ~ 22899241 (-)
LOC118938910 NA coding downstream 349890 22795564 ~ 22796979 (-)
LOC110489807 LOC106590288 coding downstream 470483 22644341 ~ 22676386 (-)
pks1 LOC106590299 coding upstream 55165 23212117 ~ 23221568 (-)
LOC110489819 LOC106590300 coding upstream 64740 23221692 ~ 23242314 (-)
acbd5a acbd5 coding upstream 96934 23253886 ~ 23275145 (-)
LOC118938792 NA coding upstream 178520 23335472 ~ 23337723 (-)
LOC110489827 NA coding upstream 180930 23337882 ~ 23339790 (-)
G1271201 NA non-coding downstream 120073 23023305 ~ 23026796 (-)
G1271085 NA non-coding downstream 303040 22843598 ~ 22843829 (-)
G1271082 NA non-coding downstream 305957 22840486 ~ 22840912 (-)
G1271074 NA non-coding downstream 312499 22833205 ~ 22834370 (-)
G1271047 NA non-coding downstream 341294 22801315 ~ 22805575 (-)
G1271285 NA non-coding upstream 18918 23175870 ~ 23176099 (-)
G1271287 NA non-coding upstream 21040 23177992 ~ 23178191 (-)
G1271297 LOC106590247 non-coding upstream 39500 23196452 ~ 23203364 (-)
G1271299 NA non-coding upstream 47635 23204587 ~ 23204788 (-)
G1271370 NA non-coding upstream 213496 23370448 ~ 23370759 (-)
G1269265 NA other downstream 1343517 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 2186780 20958372 ~ 20960089 (-)
G1267452 NA other downstream 2856196 20290350 ~ 20290673 (-)
G1267414 NA other downstream 2878381 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3693099 19435018 ~ 19453770 (-)
G1271421 NA other upstream 556403 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 2889296 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3354573 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3398016 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3413326 26566351 ~ 26694581 (-)

Expression


Co-expression Network