LOC110489814 (LOC106590296)


Basic Information

Item Value
gene id LOC110489814
gene name LOC106590296
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23162695 ~ 23172409 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562740.2
ggtgcgtggGGCTATcgtaatcaacatccacgtcttcggcgcccggggaacagtgggaacgaattttaccttgtcagctcggggattcgagtaacctttcggttactagcccaacgctctaatcgCTTGACTATTATAAGGAAACCCAGAGAAGTACCTTCCATAGCTACAATAAGTAAACTGGATAGGTAACCACCTTATTTGTTAATATGTAACCATATGTATTGCCCTGACGCAGTCATCGTGGTTGTTAAAAGATCACATCCAGTGCTGTCAGATCTATTGCTGATTAGAGCTCTTCAGAGGAACGTTATCATGTTGCTATGTTCAGATGAAGTATAGTTTATGGCTGTGATGCCAACAGAGATGCAGATATATTTCAAGCCAAGTTTTTTTTCTCATAGTACGACTTGAAAAAGAGAATATAAAATGGCTAGGTGCAAAACGGACTGCGTTGAAAAGCCTATAGCTAGGGGATTTGAAATACTTGGGGGCTTTGTTGGTAGACACCCCTGGTGGTTTTTGATTCTTCCCATGTTCATTTCTGCGGGTCTTGGCGGAGGATTTTACTTCCTTGCGGACAGAGAAGCAAATGGCATTGAAGAGATGTTTACTCCTATGGATGGACCTGCCAAACATGAACGACAAGTAGTCAAACAGTACTTTCCACAGAGTGATAGTGACTTCTCTCGTTTGCGACTCTATACTGAAGGGACCTTTGCATCTCTCATAATTGTGACGCCTGGACAAAATATCCTCACATTTACTGCtttaaaaaacatatttgaaatgGACAGAAATGTAACAAACATGAGAATTGGTGCATTGGCTTTTAAAGATCTATGTGTTGAGAAAGGTGGTGGGTGTGTGTCAAATTCAATCTTTGATATTGTAAAAACTCCTAGTGATGTCAGCACAACAACGATTAACTACCCATATCATGGCACAATTTTCATTGCATCTGAAATTGGTGGTGTGAAACTGAAAAGTGGATCAACTCAAATTGAAAGTGCAGAGGCAATTAGACTATTTTACTTCTTAAAAGAAGACAACCAAACTATAAATACCATGTGGCTAAAGAAGTTTATAGAGGCTGCTTCCAAGATGAAAAAAGAAGAAGGCATGACAATATCTTACTTTACATCCATATCAAGGGATGAAGAGTTTGAGAAGAGCTCTGACTCAATCATTCCTCTCTTCTCATTGACATATGCCCTGGCCATCAATTTTTCTATCATATCTTGTTTGAGGTTGGACTGTGTGAGGAACAAGGTGTGGGTGGCAACCTTTGGTGTCCTCTCAGCTGGTATGGCAGTGCTGTCCAGTTTTGGGTTGTTGCTGTACTGTGGGATGCCCTTCGCTATGACTGTGGCAACAGCCCCATTCCTGATTCTGGGAATTGGTGTTGACGACATGTTCATCATGATTTCCTGCTGGCAGCAGACTCAAGTTCATGACAACGTAGAGGACCGTATGGCAGCTACATACAAAGAGGCAGCTGTCTCTATCACCATCACAACACTAACTGATGCCCTGGCCTTCTATATTGGTCTGTTAACTCCCTTTGGTTCTGTACAATCATTTTGTATGTATACTGGCACAGCTGTCCTGTTCTGTTACTTGTACAATATTACCTTCTTTGGTGCATTTCTGGCATTGAATGGGAGTCGTGAAAAGGGCAACAGACACTGGCTGACATGCATGAAGGTTCCAGAACCAGAGGAGAACTCTAAAAAGTACAACCTCTGCTGTGTAGGAGGAGCTTATGATCATGAAACAGGAAAAGAGGAGCCAATGCCCattaacaacttctttaagatgTACTATGGGCCATTTCTAACAAATACTTGGACCAAGGTGTTTGTGATCCTGCTCTATGCTGGATATTTGGGCTCAAGTATCTATGGTTGCTTCCAAATACAAGAAGGCATAGACCTTAAAAACCTAGCAGCTGATAGCTCATATGTGGGTAGCTATTACGATAATGAGGACCAATACTTTTCAGAGTATGGTCCAAATGTTATGGTTGTTGTGACTGACAGTAAGTTTCAATATTGGGACCAAACTGCTCGAAAGCGTCTTGATACTTGTCTTGAACGTTTTGAGAGTCTAACGTTGGATGGTCGATCATTGGTTGCTAAAGATATGACTCTTTCTTGGCTTAATGAATATGTGAAAGTTATAAATCCAAATAACCAAAACATTTTCATGGATAATTTACCTGCGTTTTTACAACGATCAGACTTCACACAAGATGTGAATATTTCAAACAAAGTCATAATTGCCTCGCGAATGTTTATTCAGACAATCAACGTCAGTACAGCTGTTGATGAAAAGAACATGTTGAATAAGCTTCGAGAGACAGCTAATGGTTGTTCAGAAAAGTTGGTTGTTTACCACCCTGCTTTCATATACTTTGACCAGTATGCAGTCATTGTTAGTAATACCATCCAAAACATTGTAGTTGCCACTCTTGCCATGCTGGTGATCTCCCTCATGTTGATCCCCAACCCCATATGTTCTCTGTGGGTGACCTTTGCTATTGCCTCTGTCATAGTGGGTGTTGCTGGTTTCATGGCATTATGGGATGTCAATCTAGACTCTGTATCCATGATCAATCTTGTAATCTGCATTGGTTTCTCAGTGGATTTTTCTGCTCACATTTCCTATGCTTTTGTCTCTAGCAAAGAGGTCACTGCTAATAAGAAGGCTGTAGATGCTGTCTATCACTTGGGGTATCCCATCATACAGGGAGCTGTGTCTACTATTTTAGGAGTGGTGGTGCTATCTGCAGCTGAGAGCTACATCTTCAGAACCTTCTTTAAGATCATGTTCTTGGTCATTTTGTTTGGGGCGGTCCATGGTGTGGTGTTTATCCCAGTGTTTCTGACCTTCTTTGGAATCTGCGGAGGCAAAGTCAGTGATAAAAAAGATGATGGTAGGTCTAACACCTTGTCTCAAAATGGTCACATGTGGGTCTCCCAAACCACAGGTGATTTCAACTTGAAGAATACGCATGAATTAAGGGCTGTAGCAGCTAATTCACATGTATGGTCAATCAGTTCTAACCAAAGCTTTCACAACGGGAAAACTAATAGTGCTTACGAAAACATTGAAGACTGTCCCTAAAACTGTTGTCTTGAGGCCAGATTTACAAGGCATTTCCACTGTACCTGTTTTTATGGAATTAATTAAATATTAAAGGTAGAACAAATGGGTTAAAACTGTACAAATAACGTGTACAAGCGAGAATAACCTATTATGGTCAAGTGTAAATGAACACACATTCATGTTTTACCTTTCATTCAGCTCCATGCTGATGGGACCTGTACAGTAGTTCAAATCAGATGTTAATTGTCAcattcgccgaatacaacaacaatgcccttaaccaacaacgcggttttaagaaaatccctaaataagtaagagataagaataacaaataattaaagagcagcagttaataacaatagcggggctatatacagggggtaccggtacagagtcaatgtgtcaatgtgcgggtgtCGAGGTATTATGTACATTATGTAACGACattatgtaggtagagttattaaagtggctatgcatagataataacggagagtagcagtagcgtgggtgggggaatgcaaatagtctaggtagtcatttgattagctgttcaggagtcttatggcttg
>XM_036944077.1
ggtgcgtggGGCTATcgtaatcaacatccacgtcttcggcgcccggggaacagtgggaacgaattttaccttgtcagctcggggattcgagtaacctttcggttactagcccaacgctctaatcgCTTGACTATTATAAGGAAACCCAGAGAAGTACCTTCCATAGCTACAATAAGTAAACTGGATAGATGACAATATCTTACTTTACATCCATATCAAGGGATGAAGAGTTTGAGAAGAGCTCTGACTCAATCATTCCTCTCTTCTCATTGACATATGCCCTGGCCATCAATTTTTCTATCATATCTTGTTTGAGGTTGGACTGTGTGAGGAACAAGGTGTGGGTGGCAACCTTTGGTGTCCTCTCAGCTGGTATGGCAGTGCTGTCCAGTTTTGGGTTGTTGCTGTACTGTGGGATGCCCTTCGCTATGACTGTGGCAACAGCCCCATTCCTGATTCTGGGAATTGGTGTTGACGACATGTTCATCATGATTTCCTGCTGGCAGCAGACTCAAGTTCATGACAACGTAGAGGACCGTATGGCAGCTACATACAAAGAGGCAGCTGTCTCTATCACCATCACAACACTAACTGATGCCCTGGCCTTCTATATTGGTCTGTTAACTCCCTTTGGTTCTGTACAATCATTTTGTATGTATACTGGCACAGCTGTCCTGTTCTGTTACTTGTACAATATTACCTTCTTTGGTGCATTTCTGGCATTGAATGGGAGTCGTGAAAAGGGCAACAGACACTGGCTGACATGCATGAAGGTTCCAGAACCAGAGGAGAACTCTAAAAAGTACAACCTCTGCTGTGTAGGAGGAGCTTATGATCATGAAACAGGAAAAGAGGAGCCAATGCCCattaacaacttctttaagatgTACTATGGGCCATTTCTAACAAATACTTGGACCAAGGTGTTTGTGATCCTGCTCTATGCTGGATATTTGGGCTCAAGTATCTATGGTTGCTTCCAAATACAAGAAGGCATAGACCTTAAAAACCTAGCAGCTGATAGCTCATATGTGGGTAGCTATTACGATAATGAGGACCAATACTTTTCAGAGTATGGTCCAAATGTTATGGTTGTTGTGACTGACAGTAAGTTTCAATATTGGGACCAAACTGCTCGAAAGCGTCTTGATACTTGTCTTGAACGTTTTGAGAGTCTAACGTTGGATGGTCGATCATTGGTTGCTAAAGATATGACTCTTTCTTGGCTTAATGAATATGTGAAAGTTATAAATCCAAATAACCAAAACATTTTCATGGATAATTTACCTGCGTTTTTACAACGATCAGACTTCACACAAGATGTGAATATTTCAAACAAAGTCATAATTGCCTCGCGAATGTTTATTCAGACAATCAACGTCAGTACAGCTGTTGATGAAAAGAACATGTTGAATAAGCTTCGAGAGACAGCTAATGGTTGTTCAGAAAAGTTGGTTGTTTACCACCCTGCTTTCATATACTTTGACCAGTATGCAGTCATTGTTAGTAATACCATCCAAAACATTGTAGTTGCCACTCTTGCCATGCTGGTGATCTCCCTCATGTTGATCCCCAACCCCATATGTTCTCTGTGGGTGACCTTTGCTATTGCCTCTGTCATAGTGGGTGTTGCTGGTTTCATGGCATTATGGGATGTCAATCTAGACTCTGTATCCATGATCAATCTTGTAATCTGCATTGGTTTCTCAGTGGATTTTTCTGCTCACATTTCCTATGCTTTTGTCTCTAGCAAAGAGGTCACTGCTAATAAGAAGGCTGTAGATGCTGTCTATCACTTGGGGTATCCCATCATACAGGGAGCTGTGTCTACTATTTTAGGAGTGGTGGTGCTATCTGCAGCTGAGAGCTACATCTTCAGAACCTTCTTTAAGATCATGTTCTTGGTCATTTTGTTTGGGGCGGTCCATGGTGTGGTGTTTATCCCAGTGTTTCTGACCTTCTTTGGAATCTGCGGAGGCAAAGTCAGTGATAAAAAAGATGATGGTAGGTCTAACACCTTGTCTCAAAATGGTCACATGTGGGTCTCCCAAACCACAGGTGATTTCAACTTGAAGAATACGCATGAATTAAGGGCTGTAGCAGCTAATTCACATGTATGGTCAATCAGTTCTAACCAAAGCTTTCACAACGGGAAAACTAATAGTGCTTACGAAAACATTGAAGACTGTCCCTAAAACTGTTGTCTTGAGGCCAGATTTACAAGGCATTTCCACTGTACCTGTTTTTATGGAATTAATTAAATATTAAAGGTAGAACAAATGGGTTAAAACTGTACAAATAACGTGTACAAGCGAGAATAACCTATTATGGTCAAGTGTAAATGAACACACATTCATGTTTTACCTTTCATTCAGCTCCATGCTGATGGGACCTGTACAGTAGTTCAAATCAGATGTTAATTGTCAcattcgccgaatacaacaacaatgcccttaaccaacaacgcggttttaagaaaatccctaaataagtaagagataagaataacaaataattaaagagcagcagttaataacaatagcggggctatatacagggggtaccggtacagagtcaatgtgtcaatgtgcgggtgtCGAGGTATTATGTACATTATGTAACGACattatgtaggtagagttattaaagtggctatgcatagataataacggagagtagcagtagcgtgggtgggggaatgcaaatagtctaggtagtcatttgattagctgttcaggagtcttatggcttg

Function

NR:

description
patched domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562740.2 False 3686 mRNA 0.41 4 23162695 23172409
XM_036944077.1 True 2752 mRNA 0.41 4 23162695 23172409
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489816 LOC106590246 coding upstream 390 23157957 ~ 23162305 (+)
LOC110489812 rdh12 coding upstream 15956 23132828 ~ 23146739 (+)
pigm pigm coding upstream 118259 23038180 ~ 23044436 (+)
LOC100136251 LOC100136251 coding upstream 126185 23028943 ~ 23036510 (+)
LOC110489808 LOC106590291 coding upstream 134129 22962812 ~ 23028566 (+)
LOC110489817 LOC106590247 coding downstream 16695 23189104 ~ 23203359 (+)
ptchd3a LOC106590298 coding downstream 32524 23204933 ~ 23211897 (+)
mastl LOC106590301 coding downstream 75686 23248095 ~ 23253786 (+)
LOC110489823 LOC106590302 coding downstream 103104 23275513 ~ 23342095 (+)
LOC110489828 LOC106590304 coding downstream 177999 23350408 ~ 23368812 (+)
G1270541 NA non-coding upstream 35131 23122954 ~ 23127564 (+)
G1270489 NA non-coding upstream 112720 23049764 ~ 23049975 (+)
G1270416 NA non-coding upstream 259125 22903282 ~ 22903570 (+)
G1270414 NA non-coding upstream 261809 22900505 ~ 22900886 (+)
G1270595 NA non-coding downstream 15294 23187703 ~ 23187954 (+)
G1270565 LOC106590299 non-coding downstream 39712 23212121 ~ 23218465 (+)
G1270563 NA non-coding downstream 87848 23260257 ~ 23260808 (+)
G1270639 LOC106590307 non-coding downstream 202381 23374790 ~ 23375273 (+)
G1270640 NA non-coding downstream 202986 23375395 ~ 23375630 (+)
slc12a7b LOC106590280 other upstream 1368442 21729755 ~ 21794253 (+)
G1267949 pck2 other upstream 2321297 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 3482590 19598284 ~ 19680110 (+)
LOC110489737 LOC106590377 other upstream 4300184 18859697 ~ 18866106 (+)
G1270643 NA other downstream 204899 23377308 ~ 23377560 (+)
G1270652 NA other downstream 234251 23406660 ~ 23408002 (+)
G1270669 psme2 other downstream 273429 23445838 ~ 23451494 (+)
LOC110489839 LOC106590236 other downstream 494062 23666471 ~ 23836438 (+)
G1271852 LOC106584099 other downstream 1074014 24246423 ~ 24250283 (+)

Expression

LOC110489814(LOC106590296) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110489814(LOC106590296) Expression in each Bioproject

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LOC110489814(LOC106590296) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network