pks1 (LOC106590299)


Basic Information

Item Value
gene id pks1
gene name LOC106590299
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23212117 ~ 23221568 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562748.2
TTCATGGTCAACACTGGATTTCAGCTCAAGTGCAAATTAACTTTAAAGGTAGAGTTTGCGATGCACGAAGTAAACGGCAATATTGGACTTCCCTAAAACAACTCGGTGCAAAGCACAAAGTAGAATTTCGGGTGTTTTCTCCCGCAGTTATCATGTTGCAGTGGAGTGCACATATACTGTGAGTGCATTGTCTTTCTATTCTTTGACCTTAATCGACCTGATGTTGGAAAGACGGACCTGAGACTGCACTCTTTCTGTTAGCCAAATTACCCTCAATCACAGAAAACGGTCTTGGATGTCTCCCATCATTTCCTGTCAATGTAGTCATCTTAGTATTGGTTCCCCTTGAGGGAGAAGCCTAGCTCTCCTTCCCCTCGTTAGATGCAATTGGTCTGATATTCTATAGACGACGATGGAACCGTTTTAGTCACCACATCTATTTTATCCGTGTAGTCTGTCTAGGTTTTGTAATAATGATAACTGAACAAAGAGATTTCAATAAAAAGTCTGGGCAACAGAAGAGAACATAAGCATCCATTGTATGCACCTGAACAACTTAACCTCATCTCAAGCCTGCAATTAGTGACTTCTGTTTCAAACTACCCTAATTAAAAATTGCTCAAAAGCTTCTCTAACAAATCAATCTATTGTTGGAGCCCCTGCTCCCTTTGTCTTGATGCATCTGACTGATCAGTGAGACGTTAGTTGATTTATAAAGAGGACCAGGGGTAGAATATGAAAGCTGTGGCAAGAGGACAAACACCGCTCCAACAGGAATGGTTCAGCTGCCAGTAAAGACTGTTTTGCAAAAAATGTGCTTTCGACAAAACTTTGAGGGACTTTGAAACAGCATCCTCCATTCATCACAGTCTTTGGACAGGTCAAACGCATGAAAGACTGTTCTCAAGGTCACATGATTTTACATTTTGTCAAAGGTTGTTTGTAATGAGGTGCAAAGATGGAGGACAACAAAGACGAAATTGCCATAGTTGGGATAGGATGCAATTTCCCAGGAGGTGAGGGGCTTGACaatttctggaaggttctattgGAAGGGAGGAACTGTGTAGTAGACATTCCAGACGAGAGGTTTGACAGCACTTATTGGTATGATCCTGATGATAGCAAACCTGGGAAGACGCAAACAACCAAAGCTGCTCTTATAGATGGGTTTAATGAGTTTGATCACAAGTTCTTTGGCATCACTGAGGCTGAAACGGATTTCATGGACCCTCAGCACAAGCTCCTACTCCAGTGTACATACAGGGCATTAGAGGATGCTGGAATGCCAATGGAGAAAGTCAGTGGGACCAGAACAGGTGTTTACATAGGTCTCATGAACAGGGACTATGAGACCCTCCTGAACAACAGACCCAGCACCATAACCCACTACAATGGCACAGGGACGGCTATGAGCGTGGCGGCCAACAGGATATCCTTCATCTTCAATCTCACTGGTCCCTCGTTTGCCATAGACAGTGCATGTTCCTCCTCCTTGGTGGCTCTCCATTCTGCCTGCCAGGCCATCAAGCAAGGAGACTGTGAAATGGCTCTCTGTGGCGGTGTAAGCTGTATCATAGAGCCGCGAGTCTTTGTCGCTCTCAGCAAGGCAAAGATGATTTCACCTGAAGGCACCAGCAAACCTTTCTCCAGCAGAGCAGATGGCTATGGCAGAGGAGAGGGCTGCGGGATTATTCTGCTGAAGCCACTGAAAAACGCTCTGAGGGACTTTGACAAGGTATGGGGCATAGTAAGAAGAACTGCAGTAAACCAAGATGGTCACACGGTCACTCCAATCACCAAGCCATCCATGGTCCAGCAGGTAGAGCTACTACACAGAATCTACTCGGCAGAGTCTGACCTGTCATCTGTCCAGTACATAGAGGCTCATGGGACTGGAACTCCAGTGGGGGATCCCATAGAAGCAGGCAGCATCTCCAAAGTCATTGCCAAAGCCAGACCTCCAGGTTCAGAAACACTCCGCATCGGCTCTGTGAAAGGCAACATTGGACACACAGAATCTGCAGCTGGAGTGGCAGGTCTAATCAAGGTACTCCTAATGATGAAGCATGAAACCATTGTCCCTTCACTGTTCTACTCTGAGGATAGTGCCAGTATCGATGCCAAAGCTCTCAATGTAAGAGTTCCGATCAAAGCAGAGAAGTGGGAAAAAACAGAGCCCATGGCAAGGCTAGCTGGCATTAATAGCTTTGGGTTTGGAGGGACAAATGCTCATGCGATAGTGAAGGAGTATGTGCAAGGCAACAACACCAGATTGACTACTTATGACAGTCCCAAGTTGTTTGTTTTGTCTGCAGCCTCTGAGAACTCATTGGCAATGTCTATCACAGACACATATCAAAGACTTAGCAGAGATAAGCAAACTGACATACTCACTTTGATGTTTACCTCAGCATGTAGGAGGAGCCATTTGAGACACAAATACAGGAAAGCATTTATGACGTCCTCTGTCCCCGACTTAGAGAATCAACTGCAGTGTGCGATGAACAGGAAGCTTGAGCCATCAAGGTCAGATAACAGGTTGATTTTTGTGTTCTGTGGGAATGGAGTGACCTACAGGGGAATGTGTAAGCAGCTTCTGAAAGAGGAGCCAGTGTTCAGAGAAAAGGTCAGAGAGGTTGAGAATCTCTTCCAGAATTACAAAAGTACTGGCATCTCACAAAAGATAGCAAACGATTTTGACAATGATGATTATACCAAGCCAGATGTTGTTCAGCCCCTCCTCTTTGCCATTCAGGTTGGCATTGCCAGTCTCTTCAAGCACTGGGGCATCAAACCAGATGCAATTCTTGGCCACTCTGTTGGAGAGGTTGCTGCTGCCCACTGCTCTGGTCTGTTGTCCCTTGAGGATGCAGTGAAGGTGATCTATTTCCGCAGTACTCTGCAGAGTAAGGTAACAGGAGGGAAAATGCTTGTGGTCAGTAACATGGTTGTGTCAGAGGTCCTGAAAATCCTTCCAATCTACTCTGGGAAGGTTTGCCTGGCTGCTTTCAACAGCCCACAGTCCTGCGCCCTCTCAGGTGATGCAGACGCTATAGACAATATCCATCAAAAGCTGACAGCTTTGTTTAGAGGAAAGAATCTGTTCCTCCGTGTACTGGATGTACCTGCTGCATACCACAGCCATATGATGGATCCCATAGTGGACCATATTGAGGAAAGTATTGGTTCTTTGACAGCGAACAAAATGGATTGTGAGCTTTTCTCAACAGTGACTGGAGACATGTACACCCATGGAGACTTTAGCACAGGGAGATATTGGGCTAGGAATAtccgagagccagtttcattcgAGCATACAATGAAAGCAGCGACCAAAGACCAGAAGAATGTGGTCTTTGTGGAAATAGGCCCTAGAAGGGCTCTACAAAGGTACATCCAGGAGACTCTGGGAAATGACACTATAGTTCTGTCCTCAGTGCAGCCAGAAAAAGATCATGTGACAATGCTGACCACTGTGTCCAAAGTGTTTGAACAGGGGGTCCATGTAGACTGGGACAAGTTCTACGAAGGCTGTGAGGCATCACCAACACCTCTTCCAAGATATCAGTTTGATAATCTGACAAAAGAGGTATATTTTGAGGCTGTAAGACAAGGAAATGAAAAAACAGCTTCCTCTCAACACCCACTGATATCTCAGACAAAGCATGAGAGCAAAGAGCACAAATGCAATCTTTCATCAGATACTGCAGCATATCTCTGGGAGCACAAAAACAATGGTGTTGCCATTGCTCCAGGTGCATTGTATGTTGAACTGGCTTTTGCCTCAATAATGGCAAGTTCAAGACCAAAGATGCCGATTTGCTCGATGCAGCTGAGTGTAACTTTTCACAGCTTGTTTACACTCAGCACAAACTCTCAGAGTTTGAAAGTAGTACTGGAGGCAACCGAGAATGAGACCATGTTTAAGATACAATCTCCCTCAGCAACACACGCATCAGGCACCATTTGTTGTCGAAGTGGACGAACATTGGTTGAGGAACAAACCATTTGCCCGGATGTCATTTTCAAAAGGTGCAAATCCGTGGTAAAGGGGGAGGAGATCTATTCATTCCTCTCCCGTGCAGGTTTTGAGTATGGTCCTATTTTCAGACAGCTGGATGATGTACATTTCGGCGATGAATTCAAGGAGGCGGTGTCAGCAATTAAGGTCTCGGGTGAGGTGCTGAAACAGCTTCATGAGTACTTCCTTCACCCTGTGGTGTTGGACTATTTTCTGCAAATGACTGCTATGGTAGCTGTTGGAGGACTGACCACCAGGCCGGTTTTCCCATCTGCCATTGGCAGTGTGGTAATAGCAGCACCTCTGCAGGAGGACATGATTATGTATCTGAGAGCAATTCAAGAAACCTCAGACTACTTAGATGTTTGTGGTTGCTTTTCCAATAAAGACGGACATGTTTTAGTGGAACTAAAGCATGTGAGGATCTCGTTTTTAGGAAATTGTTCACATGTTGCAGAGTCATTCTTCTTTCACAATGAACTTTTCACCATCACTGACAATACCCATGTAAGCCGTAAACCCAAAGCCTTGATCTTTGAGGACATCCTGGGAGTTGGCACAGCATTGAGGCCATACCTACACCAAACATCATTTTTTGTCTTGAACAGAGAGTTTGGAACCAACCCACAAGTTCGAGACTTAGTGTCTCACTCTCTTCAAGGTGATGCTGGTGTAGATTCACAGGAGGTACTGTTCATGTGGGGTGTACAAGACCTCAGTCATCTGTCGACTGAGATGGCATTGGAATGCTTGGTTGACTGCTGTGAGCATTATCGTCAGATTGTTCTTGCCTTGAAAGAAAACGAGTGTTCCTGCACAATCCGAGTCATAACCTACCGTTCAGCAGAGACGACCGTAGACCATGTCAGTCCTGGTTTTGTCCTGTCCGGCATGACAAGAGCCTGTGCTGCTGAGATACCAGGCCTCTCCTTTCAGCTGATTGACCTTGCTTCTGTGTCAAGTGAAGACATTCAGGCATTGGTTCATGTGATTAACACCAGCAAACACCCAGAGGTCATGATTAGCAGGGGCCAGATATATTCAACAGTGATAGTCCGTACGCCCATAAAAGGGATTGCCAGCTCTGAGGGAACTGTCTACTCTTTGAGTTCTGGGCAGTTCATCCTTCAGACTGCTGATCCATACAGAATGACTAGCTTGTCTGCCATGCCTTGTGATGTAAAGGATAACCACATCCAGGAGAAATCAGTTGAGATTCAGCTCAGTGAGATTTGTGTTCATTCCTCAGACTATTTTTCTGTCAGCGTCTCTGATCTGAACTTTGGCCAGACAATGTACTGGAACAAACATGCTTCTCAGAACCACCAGCTTTTGGCCCTTGACTTCAGTGGCACTGTCACAGCTGTAGGGAAAGGTGTGAGCAAACTGAAAGTGGGAGAGCATGTAGTTTCATGTTATCCTATTGCTGCATCTTCTAAGGTTGTGATTCCTGAAGCAGCATGCTACAACCCGAAGAGGCTCCCATTTCTGAAGGAGGCTCCATGTGTGTCCTACTTTTTGCTGGCATGGGAAATCTTGTACAAAGCGTTACCCAGAGTCAAACAACAGAGAAGGTTGGCCATCATCTCCTCTGTACCTGACTCTGTTCTGCTGAAGGTCTTAACCCAAACGGCAAACAAATCAGGATGGAATGCCATCGTTCTGCCCCAGTTTAGTGGACAACTCCTGAACATTGATCAGTGTAATACATTTGTTGTATTGCCTCCCTTTGATCCATCTGTAGTGGTAAGAATAAGCAGTGGAGCCACAGCAAAGCATATTGTTGTAGTCTGTGACAACCAGGTGTCATCCTCAGCAAACATTTTTGCACATGAGAGTGAACATACACACATCCAAACACTTTACGTGTCAAATGTTTTCCAGAGAGCCAATATAAAGGCACAGAAAACAAAGATCCACAATTGGCTGAGGTCATTACATTTGGATGGTGTATCGCAATCTCTGCAAACCATTACCTTTCAATCGACAGACACAAGAGATCCTCAGCCCACTGCGCACTGTGAGTCCTACTTCAGAGCTAAGGCTGTGTCTCAAGTAGTTTTGGGTCATGCGGATTCAGAAAATACACTATCTGATATCCCTTTGCTAATGAGACCACGGCAGCTCTTTAAGAAGAGTTGTGTGTACATTGTAACCGGAGGGCTCTCGGGTTTGGGACTCGAGACTGTGAAGTTCATTGCTCACAGGGGTGGTGGATGCATTGCAACCCTCTCCAGAAGTCCTATGTCAGCTGAGATGCAGTTGGAGATGGACACTCTCCAGAGGAGATGTGGGGTGTCTATCATGAGTGTCCAATGTGACGTGTCAGTGTCAGGGCAGGTTGTGAATGCAATCACAGCAATTGTACAAATGTTTCCCTCCTGTCCAATCAAAGGAGTGTTTCACAGTGCAGCTGTGTTGCATGATGCTTTGATCGAAACCCTTGACCGATCACACTTCAATGAAGTTCTTCGACCCAAAGTGAATGGGGCATTGAATCTTCACTATGCAACACAGCACAACAAATTGGATTACTTTGTGTGCTACTCTTCCATCTCTTCGTTCATTGGCAATGCTTCGCAGTCTAACTATGCAGCAGCCAATTCGTTCCTGGACACTTTCTCTCATTATCGGCGAAACCTTGGGCTTGCTGGACAGTCCATCAACTGGGGGCCTTTGAACCTCGGTCTCTTGTTGAACAGAGACAATTTCCAAAGGTTTCTCGAGGCAAAGGGCATGATGATAATGGAGGTGTCAGAAGTCCATGAGGCCCTTGAAAAGTGTTTGTTGATGAACAATCCACAGCAAGTCATTTGCAAATTCAACTTCAGAAATCTGAGCAACCACGTTCTCTCCCAAAACGCATCTCTCAGAGGCAGGCTGACAGCTTTGGTCGAGCAAGAACTTGAGAACACCAACATGACAGAACCCATTGTCCAACAGCTTTCCACAGCACATGAGAATGTCAGGGCTATGCTAAGTGAGATCACCAGTGTTAGCATAGATGAGGTAAATGACGACACTGCCCTGTATGCACTGGGTATTGACTCAATGTTGGCTATGACTCTGCAGAATTACATCTTCCAAGAGAGAGGTGTGAATGTTCCCCTGGTTAAACTACTGGATCCAAACACCACACTGTCTACATTGGTAACACTTCTGAAAGAGAGTGGGTAAAACAGCAATGTGTACTAGCAACATTGAAATATTTTACTGAGGGTTTTGGATTATAACACTGTCTAATATAATTTGTATTGGTAAATGTTCCGTTTATTTTAAAGgatgctacagtgccttcagaaagtattcagaccctttgacttcctccacatgttgtgacgttacagccttattctaaaattgattaaattgttttttcccctcgtccatctacacacaaaaccccataataaGAAATTCAATTTTTGCAAATTTGTTACAAATATAAAAAACAGttaaaccttatttacataggatTTCAGCCTCTTTGCTATCagattcgaaattgagttcaggtgcatcctgtttcccttgatcatccttgagatgtttctacaacttgattgagtccacctgtggtaaattcaattgattggacatgatttggaaaggcaggaTCAAgccaaagatgaatggagcaaagtacagagagatccttgatgaaaacctgctccagagcgctcaggacctcagattggggcaaaggttcactccccaaatacaggggtgCCAAGTTTGTAATAGCTACCAAAAGTGCTTCAatatagtactgagtaaagggtctgaatacttatgtaaatgtgatatttccgatttttttttatttttaaattagcAACAATTTCTGTTTGTTAACATTGCATGTTAACATTTTGTGAAATGGAGGTTTAGAGTTTTGTTGAGTGTGGCTTAAAGTCTAAGTTGCAAAAATACCCCTACTCCATTGATACGAAAAGCTCATTGAATTATCCAGTGACATAATCAAAGCCTGAGGTTTTGTcaactatattatactatattaccAAGAATAAAGGCACATTTTCAGTCTG

Function

NR:

description
uncharacterized protein LOC110489820

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562748.2 True 8073 mRNA 0.44 6 23212117 23221568
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110489813 LOC106590295 coding downstream 55165 23146869 ~ 23156952 (-)
LOC110489811 LOC106590294 coding downstream 89291 23060684 ~ 23122826 (-)
si:dkey-225n22.4 LOC106590290 coding downstream 256353 22907916 ~ 22955764 (-)
LOC110490829 LOC106590245 coding downstream 312876 22898112 ~ 22899241 (-)
LOC118938910 NA coding downstream 415138 22795564 ~ 22796979 (-)
LOC110489819 LOC106590300 coding upstream 124 23221692 ~ 23242314 (-)
acbd5a acbd5 coding upstream 32318 23253886 ~ 23275145 (-)
LOC118938792 NA coding upstream 113904 23335472 ~ 23337723 (-)
LOC110489827 NA coding upstream 116314 23337882 ~ 23339790 (-)
LOC110489826 LOC106590306 coding upstream 121425 23342993 ~ 23350387 (-)
G1271299 NA non-coding downstream 7329 23204587 ~ 23204788 (-)
G1271297 LOC106590247 non-coding downstream 8753 23196452 ~ 23203364 (-)
G1271287 NA non-coding downstream 33926 23177992 ~ 23178191 (-)
G1271285 NA non-coding downstream 36018 23175870 ~ 23176099 (-)
G1271201 NA non-coding downstream 185321 23023305 ~ 23026796 (-)
G1271370 NA non-coding upstream 148880 23370448 ~ 23370759 (-)
G1271376 NA non-coding upstream 183319 23404887 ~ 23407463 (-)
G1271556 NA non-coding upstream 515261 23736829 ~ 23737030 (-)
G1271557 NA non-coding upstream 515792 23737360 ~ 23737699 (-)
G1271559 NA non-coding upstream 517337 23738905 ~ 23739115 (-)
G1269265 NA other downstream 1408765 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 2252028 20958372 ~ 20960089 (-)
G1267452 NA other downstream 2921444 20290350 ~ 20290673 (-)
G1267414 NA other downstream 2943629 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3758347 19435018 ~ 19453770 (-)
G1271421 NA other upstream 491787 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 2824680 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3289957 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3333400 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3348710 26566351 ~ 26694581 (-)

Expression

pks1(LOC106590299) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.
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pks1(LOC106590299) Expression in each Bioproject

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pks1(LOC106590299) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network