LOC110489819 (LOC106590300)


Basic Information

Item Value
gene id LOC110489819
gene name LOC106590300
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23221692 ~ 23242314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562746.2
GTCACTTAACGTTGTTGACCTTTGAGAAGCCATTTTCATCAGAAAGTACCTAGTTGAGTCacaggagagaaaaaaaggaCCGTGCCCAGGAGGAGTTGGTATATTCAGTAACATTGAGGGTCTGTCTTCACATACCAACCCTCAAGTTGCTGTGATAATGTTTTCTTTCTCGACGACGTTCCAGCCACAGGTAACAAGTCAACTCATTGGCCAACTCATCAATGCGCTTCATTCCCTGAAGAATTCAGCCAGCTCCAAGGCAACAGCTTCTGTCCAGGGTCTGCAAAAAGATGTCACACCAGAGCAGGACCCGCTGCTCACAGAGCCCGCTGTGAACCTGAGGGACCTGGGTCTATCAGACCTGAGGGTGGGACAGTTGGATGAGCTGCTGAACAGGTTACTGCCCTCACTGGGCTCGGAGGACGGCCCAGCCACCTCAAGATGGAGGACGTCCCATGTCTCCGCAGAATCTTTCTTCCACAACAAACATGGGTTGTCAAATGCAAAGTTGGGTGTTTTTGGATTGCCTATGTTCCACAGACCAAACCAGAGTCCTCTACAAGTCGTCTGTTCAGAGCTCCAGTACTGGCCTGTAAGGGTCCAGAACCGAGGCTTCAAGACTCTGAGGAAGAGCAGACGTGTGCAGTCTGGTTACGTGGGGCCGGCGGAACCAGAGGGGTACACCACAACCTTCATGAAGGGTCTCCTCCTGAGACCAGACAAGGCCCCAGAGGCAGAGAGTCTTGACCAAGTGGTAAAGTTGAAGAACCTGCCAGGTGACCAACAAGATGCTTTCAAGTCTGGCTTCACAGAGGGTTTCATGAAGTCCCAGGCCTTCACTCAGAGGACACAAGACTCACTAAGGAGGACCAGGCTGATTCTATTGGTCCTCCTCCTCGTGGGAATCTACGGCCTGTCAAGAACCCCGTTTCTCTCGGGTAAAGGCTCCTTTTCTGATGCTGTGAGGTTCCGCACCACATCAGGCCTGGACTCGCAAGTGGACCCAGTCCAGGTGAAGAGTGTGACGTTTGAGCACGTCAAGGGGGCGGAGGAGGCCAAGAACGAACTGCAGGACGTGGTCGAGTTCCTCAGGAACCCCCAGAAGTTCACTGTGCTGGGAGGGAAGCTGCCTAAAGGCATCCTCCTGATCGGCCCCCCGGGAACAGGGAAGACTCTCCTGGCTCGGGCTGTAGCCGGGGAGGCCGACGTCCCCTTCTTCTATGCCTCGGGATCTGAATTTGACGAAATGTTTGTTGGTGTTGGAGCTAGCCGCATCAGGAACCTCTTCAAAGAGGCAAAAGCCAATGCACCTTGTGTTATCTTCATTGATGAGCTTGACAGTGTGGGGGGAAAGCGGATTGAGTCACCAATGCACCCCTACTCCAGACAGACCATCAACCAGCTACTGGCAGAGATGGATGGGTTCAAACCAAATGAAGGGGTCATCGTTATTGGCGCTACAAACTTTGCAGAGGCTTTGGATAATGCGCTGATAAGACCGGGGAGGTTTGACATGCAGGTGACGGTCCCTCGGCCCGACGTGAAAGGACGCACAGAGATCCTCAACTGGTACCTTCAGAAGATCAAAGTGGATCCTAACGTGAACGCAGAAATCATTGCCAGGGGGACGGTGGGGTTCACTGGGGCGGAGCTGGAGAACCTCGTGAACCAGGCGGCCCTGAAAGCAGCGGTGGATGGCCTGGACCTGGTCACCATGAAGGAACTGGAGTTCTCCAAGGACAAGATCCTCATGGGTCCTGAGCGCAAGAGTGTGGAAATCGATAAGAAGAACAAGCAAATCACAGCCTACCATGAGTCAGGCCACGCCATTGTGGCGTATTACACAAAAGATGCCATGCCCATTAACAAGGCCACCATCATGCCCCGTGGACCCACTCTCGGACATGTGTCCATGCTCCCAGAGAATGACCGATGGAGTGAGACACGTGCTCAGCTCCTGGCCCAGATGGACGTCAGCATGGGCGGCCGCGTGGCCGAGGAACTCATCTTCGGCGACGATTACATCACAACCGGAGCATCAAGTGACTTCGACGGGGCAACTAAAATAGCCAAGATGATGGTGACCAGGTTTGGAATGAGTGACAAGCTTGGTGTCATGACCTATGCTGACCTGACTAAACAGAGCCCTGAGACTCAGGCTGCCATCGAAAAGGAAGTGAGGGTCCTGCTCAAGGACTCGTATGAGCGAGCCAAAAACCTCTTGAAGACATACAGTGACGAGCACAAGACGCTGGCTGAGGCTCTGCTAACGTACGAAACGCTGGATGCCAAAGAGATCAAGCTGGTCCTGGAGGGCAAGTCCCTGGACCCTAGATGACTCTGTGGACGAGTCAGAGACAGTTAGACATCAGGGTTGGGtttaattccatttaaattctagTTAATTCAGGAAGCTAACCAAATTCTAATTCCATGTTTTGTCCTCAATGAAAAGCATTGACGAGAATTAGGATTTCAGTGTACTTCTTGAattaaaatggaattgacccaaaCCTTGTTGGACAAATGTATATGTATTATATGAAGATGTGCAATGGAGTGGAGGCCTTTGTAGTATTTTCTCTTTCTCAATGTAAAATTACACACTGAATTTGTGTTTTAGTCAACAATCACATTTTATGTTATCCCTCTTGGTTTTGACACCTCAAAGACGTTGTTGGGCAGGCATTCCCTTATGGCAGCTTGGTCAACAGAGATAAAAGCCTGTCGATAGATTATTTTTAACACCCCAAACTCAAAATGCCCACCTTTTGTTGCCATTTATTTGAGAGATATTGTcctcatgcccccccccccccccaatttgcAGTCTGAGATTGTGAGTTCGCCCCCTTTAAAAGTGTAAGTTGTTTCAATCAAGAAAGTGCTGAATTAGTCCTCAGCAAGAGAGGCCAAACAGATGTAGTTCTTTCCCAGCTTCATTTCAGTAGCAGTTTTGGGCATGGAAGCCTCATGCATTTGATATGTTATCAAAGTTATGAGGGAAAATAAATGGTTGCTTTTGGTCACAGACAATGATGTAGTGGTGGGCAAACTGATCGCAGTGAGTAAAGTGAAGCTccctatactttcaatgcattCTTCTGCAAAAGGTGGGTATATGCTTGGCCAAAATAAAAAAGGTGCCTAAACTGCGTTCACCCTCCACTACACAACTAGTTGCAGATCTTATCCTACTAGACCTATAGTCTTTTCCCTGAGCAGAATATTAGTGGTATTAAAAACCCATATGTTTTGTGGTAGGTGGTATCATTAAAGTGACAATcggcagttgaaacaataacaaagcaaccTCCCTGCCCCTGTTttagtaaaaagctgagggatggggccgAAGTGTAACTGCTCCAATTcatagagctatggatgcaaggactgaccatcccaTTTTATCAACATTCTAGTTTAAACAATGTTATGAGCccatagtgtttgtttacatttactttggttacaaacattggagttcaACCCGCTtatgttttgggttctgatgcaactgcagattgtccctttaaaaaagaaaaaaataactTTAATATACATATAGAATGTAAATACAGAATGGCTGTAAGTGTTCTGACCACTTTATGATGCCTCAGTGAATTGTGGAACTGCAATGGTTGACTCTCTGAATCTGAAGTAATTCATCTGCATTCACTTTATGTAgttttcatttatttatgtaCCCAAAGTGTGCCAGATTTGCCCTCGTCAGCTGTTTTAGGCCCACGTGCCCTCTTCTGAGCCCAATATGTAAAGGGgctgtgtatatatttgtgtgtgtaagGTAGATAGATATACTTCATCTCTTTCTCGTCATTGTAAATGGATCTTGTGGATGTTGAATAAAAGTTATTCTAAAATAA
>XM_021562747.2
GTCACTTAACGTTGTTGACCTTTGAGAAGCCATTTTCATCAGAAAGTACCTAGTTGAGTCacaggagagaaaaaaaggaCCGTGCCCAGGAGGAGTTGGTATATTCAGTAACATTGAGGGTCTGTCTTCACATACCAACCCTCAAGTTGCTGTGATAATGTTTTCTTTCTCGACGACGTTCCAGCCACAGGTAACAAGTCAACTCATTGGCCAACTCATCAATGCGCTTCATTCCCTGAAGAATTCAGCCAGCTCCAAGGCAACAGCTTCTGTCCAGGGTCTGCAAAAAGATGTCACACCAGAGCAGGACCCGCTGCTCACAGAGCCCGCTGTGAACCTGAGGGACCTGGGTCTATCAGACCTGAGGGTGGGACAGTTGGATGAGCTGCTGAACAGGTTACTGCCCTCACTGGGCTCGGAGGACGGCCCAGCCACCTCAAGATGGAGGACGTCCCATGTCTCCGCAGAATCTTTCTTCCACAACAAACATGGGTTGTCAAATGCAAAGTTGGGTGTTTTTGGATTGCCTATGTTCCACAGACCAAACCAGAGTCCTCTACAAGTCGTCTGTTCAGAGCTCCAGTACTGGCCTGTAAGGGTCCAGAACCGAGGCTTCAAGACTCTGAGGAAGAGCAGACGTGTGCAGTCTGGTTACGTGGGGCCGGCGGAACCAGAGGGGTACACCACAACCTTCATGAAGGGTCTCCTCCTGAGACCAGACAAGGCCCCAGAGGCAGAGAGTCTTGACCAAGTGGTAAAGTTGAAGAACCTGCCAGGTGACCAACAAGATGCTTTCAAGTCTGGCTTCACAGAGGGTTTCATGAAGTCCCAGGCCTTCACTCAGAGGACACAAGACTCACTAAGGAGGACCAGGCTGATTCTATTGGTCCTCCTCCTCGTGGGAATCTACGGCCTGTCAAGAACCCCGTTTCTCTCGGTGAGGTTCCGCACCACATCAGGCCTGGACTCGCAAGTGGACCCAGTCCAGGTGAAGAGTGTGACGTTTGAGCACGTCAAGGGGGCGGAGGAGGCCAAGAACGAACTGCAGGACGTGGTCGAGTTCCTCAGGAACCCCCAGAAGTTCACTGTGCTGGGAGGGAAGCTGCCTAAAGGCATCCTCCTGATCGGCCCCCCGGGAACAGGGAAGACTCTCCTGGCTCGGGCTGTAGCCGGGGAGGCCGACGTCCCCTTCTTCTATGCCTCGGGATCTGAATTTGACGAAATGTTTGTTGGTGTTGGAGCTAGCCGCATCAGGAACCTCTTCAAAGAGGCAAAAGCCAATGCACCTTGTGTTATCTTCATTGATGAGCTTGACAGTGTGGGGGGAAAGCGGATTGAGTCACCAATGCACCCCTACTCCAGACAGACCATCAACCAGCTACTGGCAGAGATGGATGGGTTCAAACCAAATGAAGGGGTCATCGTTATTGGCGCTACAAACTTTGCAGAGGCTTTGGATAATGCGCTGATAAGACCGGGGAGGTTTGACATGCAGGTGACGGTCCCTCGGCCCGACGTGAAAGGACGCACAGAGATCCTCAACTGGTACCTTCAGAAGATCAAAGTGGATCCTAACGTGAACGCAGAAATCATTGCCAGGGGGACGGTGGGGTTCACTGGGGCGGAGCTGGAGAACCTCGTGAACCAGGCGGCCCTGAAAGCAGCGGTGGATGGCCTGGACCTGGTCACCATGAAGGAACTGGAGTTCTCCAAGGACAAGATCCTCATGGGTCCTGAGCGCAAGAGTGTGGAAATCGATAAGAAGAACAAGCAAATCACAGCCTACCATGAGTCAGGCCACGCCATTGTGGCGTATTACACAAAAGATGCCATGCCCATTAACAAGGCCACCATCATGCCCCGTGGACCCACTCTCGGACATGTGTCCATGCTCCCAGAGAATGACCGATGGAGTGAGACACGTGCTCAGCTCCTGGCCCAGATGGACGTCAGCATGGGCGGCCGCGTGGCCGAGGAACTCATCTTCGGCGACGATTACATCACAACCGGAGCATCAAGTGACTTCGACGGGGCAACTAAAATAGCCAAGATGATGGTGACCAGGTTTGGAATGAGTGACAAGCTTGGTGTCATGACCTATGCTGACCTGACTAAACAGAGCCCTGAGACTCAGGCTGCCATCGAAAAGGAAGTGAGGGTCCTGCTCAAGGACTCGTATGAGCGAGCCAAAAACCTCTTGAAGACATACAGTGACGAGCACAAGACGCTGGCTGAGGCTCTGCTAACGTACGAAACGCTGGATGCCAAAGAGATCAAGCTGGTCCTGGAGGGCAAGTCCCTGGACCCTAGATGACTCTGTGGACGAGTCAGAGACAGTTAGACATCAGGGTTGGGtttaattccatttaaattctagTTAATTCAGGAAGCTAACCAAATTCTAATTCCATGTTTTGTCCTCAATGAAAAGCATTGACGAGAATTAGGATTTCAGTGTACTTCTTGAattaaaatggaattgacccaaaCCTTGTTGGACAAATGTATATGTATTATATGAAGATGTGCAATGGAGTGGAGGCCTTTGTAGTATTTTCTCTTTCTCAATGTAAAATTACACACTGAATTTGTGTTTTAGTCAACAATCACATTTTATGTTATCCCTCTTGGTTTTGACACCTCAAAGACGTTGTTGGGCAGGCATTCCCTTATGGCAGCTTGGTCAACAGAGATAAAAGCCTGTCGATAGATTATTTTTAACACCCCAAACTCAAAATGCCCACCTTTTGTTGCCATTTATTTGAGAGATATTGTcctcatgcccccccccccccccaatttgcAGTCTGAGATTGTGAGTTCGCCCCCTTTAAAAGTGTAAGTTGTTTCAATCAAGAAAGTGCTGAATTAGTCCTCAGCAAGAGAGGCCAAACAGATGTAGTTCTTTCCCAGCTTCATTTCAGTAGCAGTTTTGGGCATGGAAGCCTCATGCATTTGATATGTTATCAAAGTTATGAGGGAAAATAAATGGTTGCTTTTGGTCACAGACAATGATGTAGTGGTGGGCAAACTGATCGCAGTGAGTAAAGTGAAGCTccctatactttcaatgcattCTTCTGCAAAAGGTGGGTATATGCTTGGCCAAAATAAAAAAGGTGCCTAAACTGCGTTCACCCTCCACTACACAACTAGTTGCAGATCTTATCCTACTAGACCTATAGTCTTTTCCCTGAGCAGAATATTAGTGGTATTAAAAACCCATATGTTTTGTGGTAGGTGGTATCATTAAAGTGACAATcggcagttgaaacaataacaaagcaaccTCCCTGCCCCTGTTttagtaaaaagctgagggatggggccgAAGTGTAACTGCTCCAATTcatagagctatggatgcaaggactgaccatcccaTTTTATCAACATTCTAGTTTAAACAATGTTATGAGCccatagtgtttgtttacatttactttggttacaaacattggagttcaACCCGCTtatgttttgggttctgatgcaactgcagattgtccctttaaaaaagaaaaaaataactTTAATATACATATAGAATGTAAATACAGAATGGCTGTAAGTGTTCTGACCACTTTATGATGCCTCAGTGAATTGTGGAACTGCAATGGTTGACTCTCTGAATCTGAAGTAATTCATCTGCATTCACTTTATGTAgttttcatttatttatgtaCCCAAAGTGTGCCAGATTTGCCCTCGTCAGCTGTTTTAGGCCCACGTGCCCTCTTCTGAGCCCAATATGTAAAGGGgctgtgtatatatttgtgtgtgtaagGTAGATAGATATACTTCATCTCTTTCTCGTCATTGTAAATGGATCTTGTGGATGTTGAATAAAAGTTATTCTAAAATAA

Function

NR:

description
ATP-dependent zinc metalloprotease YME1L1-like isoform X2

GO: NA

KEGG:

id description
K08955 YME1; ATP-dependent metalloprotease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562746.2 False 3890 mRNA 0.48 18 23221692 23242314
XM_021562747.2 True 3866 mRNA 0.48 18 23221692 23242314
Loading

Neighbor

gene id symbol gene type direction distance location
pks1 LOC106590299 coding downstream 124 23212117 ~ 23221568 (-)
LOC110489813 LOC106590295 coding downstream 64740 23146869 ~ 23156952 (-)
LOC110489811 LOC106590294 coding downstream 98866 23060684 ~ 23122826 (-)
si:dkey-225n22.4 LOC106590290 coding downstream 265928 22907916 ~ 22955764 (-)
LOC110490829 LOC106590245 coding downstream 322451 22898112 ~ 22899241 (-)
acbd5a acbd5 coding upstream 11572 23253886 ~ 23275145 (-)
LOC118938792 NA coding upstream 93158 23335472 ~ 23337723 (-)
LOC110489827 NA coding upstream 95568 23337882 ~ 23339790 (-)
LOC110489826 LOC106590306 coding upstream 100679 23342993 ~ 23350387 (-)
LOC110489829 LOC106590307 coding upstream 128853 23371167 ~ 23378986 (-)
G1271299 NA non-coding downstream 16904 23204587 ~ 23204788 (-)
G1271297 LOC106590247 non-coding downstream 18328 23196452 ~ 23203364 (-)
G1271287 NA non-coding downstream 43501 23177992 ~ 23178191 (-)
G1271285 NA non-coding downstream 45593 23175870 ~ 23176099 (-)
G1271201 NA non-coding downstream 194896 23023305 ~ 23026796 (-)
G1271370 NA non-coding upstream 128134 23370448 ~ 23370759 (-)
G1271376 NA non-coding upstream 162573 23404887 ~ 23407463 (-)
G1271556 NA non-coding upstream 494515 23736829 ~ 23737030 (-)
G1271557 NA non-coding upstream 495046 23737360 ~ 23737699 (-)
G1271559 NA non-coding upstream 496591 23738905 ~ 23739115 (-)
G1269265 NA other downstream 1418340 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 2261603 20958372 ~ 20960089 (-)
G1267452 NA other downstream 2931019 20290350 ~ 20290673 (-)
G1267414 NA other downstream 2953204 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3767922 19435018 ~ 19453770 (-)
G1271421 NA other upstream 471041 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 2803934 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3269211 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3312654 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3327964 26566351 ~ 26694581 (-)

Expression

LOC110489819(LOC106590300) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
End of interactive chart.

LOC110489819(LOC106590300) Expression in each Bioproject

Bar chart with 21 bars.
LOC110489819(LOC106590300) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network