LOC118938792


Basic Information

Item Value
gene id LOC118938792
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23335472 ~ 23337723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036063.1
CTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATTTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACAGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACAGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATTTACGGAGGTGTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACGGAAGGTGTTCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACGGAGGTGTTCTACATCTAGATCTAGAGGGAAAAGGAGAGCGTGTGGTGGGCCTCAGGACTTACTGTTCTCCTGCACCCTGGCCACAAAGCCTGTCAGAGGTATCTGTGGAGTCAGCTGGGgcatgggaggaggagggggagcgaTAGACACTGGAAGCCGCCGCAGGCGcaccgacagacagacaccgacagacagacacaccgacagacagacacacaaacaaaacgAAATAGAGAAAGCAAGGATATAAAGTACACAGAGATAGTCACCCAGAACAATATAGGAAAATATTAAAAGAAACAGACAGAATACCTTCAACCCAAGTAAATGCAATATTCTGCAAGAATTAAAAGACAAAGCATGTGTGACAAAGCATAAAAACAGTCTATGCTTGTGGTTTTTAGTTCAGAGACAGAGTCTAGATTCCCCCAGGTATTTAGTGGTACAGATTGAGGGATTAAAAAGGGATTAGGTTTGATTGTCGTTGCTATTTCCTGCTCCTAATCACAATCTGAACCAGATGATTGTAGTGTCGGGACATGACCTGAGAGAGGTGCTGTGTGCAACCCTACTAACCCTAGCTCTCAATCAACCAAGTTACTTTCACAACTAGTGGCGTGAAGAGTGCCACCAATCTTAAAAATAACCTGTAAACCTTAGAGATCAGCATCAGGTTTATaaggaattgggtgccattttgaACGCAGTTCAGGTGGAAGAGTGtgtgcatctgtctgtctgcgtgctcctgcccgcctgtctgtctgcgtgcgtgcgtctgcctgtctgtctgcgtgcgtctgcgtgcgtgcgtctgcctgtctgtctgtctgcgtgcgtgCCTCTGCCTGTCTGCGTACGACACTGTTAGTGGTTTAAGCTTGATCTTGATCTATAGGCATTTGAGATCAACCCCAGGCCCAAGTCATGATCTTTACTGAACCAAGCATGTGACCGCACCTCCATACACTCCCTCTTTTAAACACCAGACAGTCTTTTACAGGGCAAGTGAATGAGAAAGGAGAGACCAATCTCAATTCAAAAACGCACAGGTGGCTGCTGTAGGCTTGAGTTTCTCACATTTTATCCAAATTCTTTTGGCTTTTCCAGGAATTAATGAC
>XR_005036064.1
CTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATTTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACAGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACAGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATTTACGGAGGTGTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACGGAAGGTGTTCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACGGAGGTGTTCTACATCTAGATCTAGAGGGAAAAGGAGAGCGTGTGGTGGGCCTCAGGACTTACTGTTCTCCTGCACCCTGGCCACAAAGCCTGTCAGAGGTATCTGTGGAGTCAGCTGGGgcatgggaggaggagggggagcgaTAGACACTGGAAGCCGCCGCAGGCGcaccgacagacagacaccgacagacagacacaccgacagacagacacacaaacaaaacgAAATAGAGAAAGCAAGGATATAAAGTACACAGAGATAGTCACCCAGAACAATATAGGAAAATATTAAAAGAAACAGACAGAATACCTTCAACCCAAGTAAATGCAATATTCTGCAAGAATTAAAAGACAAAGCATGTGTGACAAAGCATAAAAACAGTCTATGCTTGTGGTTTTTAGTTCAGAGACAGAGTCTAGATTCCCCCAGGTATTTAGTGGTACAGATTGAGGGATTAAAAAGGGATTAGGTTTGATTGTCGTTGCTATTTCCTGCTCCTAATCACAATCTGAACCAGATGATTGTAGTGTCGGGACATGACCTGAGAGAGGTGCTGTGTGCAACCCTACTAACCCTAGCTCTCAATCAACCAAGTTACTTTCACAACTAGTGGCGTGAAGAGTGCCACCAATCTTAAAAATAACCTGTAAACCTTAGAGATCAGCATCAGGTTTATaaggaattgggtgccattttgaACGCAGTTCAGGTGGAAGAGTGtgtgcatctgtctgtctgcgtgctcctgcccgcctgtctgtctgcgtgcgtgcgtctgcctgtctgtctgcgtgcgtctgcgtgcgtgcgtctgcctgtctgtctgtctgcgtgcgtgCCTCTGCCTGTCTGCGTACGACACTGTTAGTGGTTTAAGCTTGATCTTGATCTATAGGCATTTGAGATCAACCCCAGGCCCAAGTCATGATCTTTACTGAACCAAGCATGTGACCGCACCTCCATACACTCCCTCTTTTAAACACCAGACAGTCTTTTACAGGGCAAGTGAATGAGAAAGGAGAGACCAATCTCAATTCAAAAACGCACAGGTGGCTGCTGTAGGCTTGAGTTTCTCACATTTTATCCAAATTCTTTTGGCTTTTCCAGGAATTAATGAC
>XR_005036065.1
CTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATTTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACAGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACAGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATTTACGGAGGTGTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTACGGAAGGTGTTCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACGGAGGTGTTCTACATCTAGATCTAGAGGGAAAAGGAGAGCGTGTGGTGGGCCTCAGGACTTACTGTTCTCCTGCACCCTGGCCACAAAGCCTGTCAGAGGTATCTGTGGAGTCAGCTGGGgcatgggaggaggagggggagcgaTAGACACTGGAAGCCGCCGCAGGCGcaccgacagacagacaccgacagacagacacaccgacagacagacacacaaacaaaacgAAATAGAGAAAGCAAGGATATAAAGTACACAGAGATAGTCACCCAGAACAATATAGGAAAATATTAAAAGAAACAGACAGAATACCTTCAACCCAAGTAAATGCAATATTCTGCAAGAATTAAAAGACAAAGCATGTGTGACAAAGCATAAAAACAGTCTATGCTTGTGGTTTTTAGTTCAGAGACAGAGTCTAGATTCCCCCAGGTATTTAGTGGTACAGATTGAGGGATTAAAAAGGGATTAGGTTTGATTGTCGTTGCTATTTCCTGCTCCTAATCACAATCTGAACCAGATGATTGTAGTGTCGGGACATGACCTGAGAGAGGTGCTGTGTGCAACCCTACTAACCCTAGCTCTCAATCAACCAAGTTACTTTCACAACTAGTGGCGTGAAGAGTGCCACCAATCTTAAAAATAACCTGTAAACCTTAGAGATCAGCATCAGGTTTATaaggaattgggtgccattttgaACGCAGTTCAGGTGGAAGAGTGtgtgcatctgtctgtctgcgtgctcctgcccgcctgtctgtctgcgtgcgtgcgtctgcctgtctgtctgcgtgcgtctgcgtgcgtgcgtctgcctgtctgtctgtctgcgtgcgtgCCTCTGCCTGTCTGCGTACGACACTGTTAGTGGTTTAAGCTTGATCTTGATCTATAGGCATTTGAGATCAACCCCAGGCCCAAGTCATGATCTTTACTGAACCAAGCATGTGACCGCACCTCCATACACTCCCTCTTTTAAACACCAGACAGTCTTTTACAGGGCAAGTGAATGAGAAAGGAGAGACCAATCTCAATTCAAAAACGCACAGGTGGCTGCTGTAGGCTTGAGTTTCTCACATTTTATCCAAATTCTTTTGGCTTTTCCAGGAATTAATGAC

Function

NR:

description
uncharacterized protein LOC101165200 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036063.1 False 2183 mRNA 0.46 3 23335472 23337723
XR_005036064.1 False 2038 mRNA 0.46 3 23335472 23337723
XR_005036065.1 True 2095 mRNA 0.46 3 23335472 23337723

Neighbor

gene id symbol gene type direction distance location
acbd5a acbd5 coding downstream 60327 23253886 ~ 23275145 (-)
LOC110489819 LOC106590300 coding downstream 93158 23221692 ~ 23242314 (-)
pks1 LOC106590299 coding downstream 113904 23212117 ~ 23221568 (-)
LOC110489813 LOC106590295 coding downstream 178520 23146869 ~ 23156952 (-)
LOC110489811 LOC106590294 coding downstream 212646 23060684 ~ 23122826 (-)
LOC110489827 NA coding upstream 159 23337882 ~ 23339790 (-)
LOC110489826 LOC106590306 coding upstream 5270 23342993 ~ 23350387 (-)
LOC110489829 LOC106590307 coding upstream 33444 23371167 ~ 23378986 (-)
LOC110489830 LOC106590309 coding upstream 42056 23379779 ~ 23385850 (-)
LOC110489831 LOC106590310 coding upstream 62042 23399765 ~ 23441392 (-)
G1271299 NA non-coding downstream 130684 23204587 ~ 23204788 (-)
G1271297 LOC106590247 non-coding downstream 132108 23196452 ~ 23203364 (-)
G1271287 NA non-coding downstream 157281 23177992 ~ 23178191 (-)
G1271285 NA non-coding downstream 159373 23175870 ~ 23176099 (-)
G1271201 NA non-coding downstream 308676 23023305 ~ 23026796 (-)
G1271370 NA non-coding upstream 32725 23370448 ~ 23370759 (-)
G1271376 NA non-coding upstream 67164 23404887 ~ 23407463 (-)
G1271556 NA non-coding upstream 399106 23736829 ~ 23737030 (-)
G1271557 NA non-coding upstream 399637 23737360 ~ 23737699 (-)
G1271559 NA non-coding upstream 401182 23738905 ~ 23739115 (-)
G1269265 NA other downstream 1532120 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 2375383 20958372 ~ 20960089 (-)
G1267452 NA other downstream 3044799 20290350 ~ 20290673 (-)
G1267414 NA other downstream 3066984 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3881702 19435018 ~ 19453770 (-)
G1271421 NA other upstream 375632 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 2708525 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3173802 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3217245 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3232555 26566351 ~ 26694581 (-)

Expression

LOC118938792 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 5.
End of interactive chart.

LOC118938792 Expression in each Bioproject

Bar chart with 19 bars.
LOC118938792 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network