LOC110489827


Basic Information

Item Value
gene id LOC110489827
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23337882 ~ 23339790 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036062.1
ACTGCCAAACAGCAGTAGAGGGGAGGGGGCAGAAAGGAGATTAGGAACGCTGCCTGAAACTGGGACGAAGGAaacagtacagcacattacatGTGGGCTGCACATGCAACCAAGCCCAACGGTACAGAGAAAACCATGCAATCGTGGCAGAGCTACATGCAAGGGTGTGTATATGCCAGGCACCGATGGTTAGTCGGTTAAATGCACAACAGCGAGTTGTTGGCATGACGATTTTGACCTTTGTTCCTCCAGGTCACTTGTTCAAGTCACTTGTTAAGAAATGTAATTTAGTTGCAAGTGTTCTTTGCCACTCAGGCAATGCTGCACTTTAATGTGAACTTGTTTGGACACTTTCCATCACCTTCCCACAACATTTGAGTTCTCTGTTTGGTTCAAATGAATGATGTCAAAAACAATATAATAGACTGCAACCTGAATAGTAAGTTATGAGCTCTCTCTATATGAGATGCTTAATTAGTATGCGTGGATCGTGGAGGTTTGCCTGCATAAATCTATCATGATACCATTCATGTGTTGTACCAAAAGGAATAGGAGCTCAAATATTCTCAAGGTTGTGTATATCAAAAGGGGAGGATATGGGTATTGAAGTGGTTTTTGTTTTACTCCATCTACTGGAAATTAAAGCCGTCGTACTCTTAAGAAACACCAACAAAATGGTGCTATTTCAATTCTGCACGTAACATAAATCTGTCTAACAATAGCAGGCTAAGCTTCTTTAGCGTTACATAAAAGCATGCACACTATTTCTCtgttgatcacacacacacacacaacaaatgtGCATACGTTAAGTCCTTCCGCTCATACAGTGCATTTTCTGAGTGAAATTATACTTAACATTTGCCTTATTGCACACATGGGACTTTGTGGAAATACCATTTCAGCTGCCAATTTCATTGTACATTCTCCTAAATAATCCTGGAATGGAGCACTGAAGAAAGCAATGGGTGCCAATGGTAATAAGCATGTATCTGTCAGAACTACTTATTAGCACAGACTGTAGATGAGGATGATGATACTGAGGATGTTTAGTGTCCAGCATAAGACCGACAAATGAGTGAACAGGCACAAGGCATGCTGTGTGTGATTGAGAGATGGAGGTGTTCTACATCTAGTTCTACGGAGGTGTTCTACATCTAGTTCTACATCTAGTTCTACGGAGGTTGTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACATCTAGTTTTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACATCTAGTTCTACGGAGGTTGTCTACATCTACGGAGGTGTTCTACATCTAGTTCTACATCTAGTTTTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGTTCTACATCTACGGAGGTGTTCTACATCTACGGAGGTCTTCTACATCTACGGAGGTCTTCTACATCTAGT

Function

NR:

description
uncharacterized protein LOC101165200 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036062.1 True 1821 mRNA 0.43 3 23337882 23339790

Neighbor

gene id symbol gene type direction distance location
LOC118938792 NA coding downstream 159 23335472 ~ 23337723 (-)
acbd5a acbd5 coding downstream 62737 23253886 ~ 23275145 (-)
LOC110489819 LOC106590300 coding downstream 95568 23221692 ~ 23242314 (-)
pks1 LOC106590299 coding downstream 116314 23212117 ~ 23221568 (-)
LOC110489813 LOC106590295 coding downstream 180930 23146869 ~ 23156952 (-)
LOC110489826 LOC106590306 coding upstream 3203 23342993 ~ 23350387 (-)
LOC110489829 LOC106590307 coding upstream 31377 23371167 ~ 23378986 (-)
LOC110489830 LOC106590309 coding upstream 39989 23379779 ~ 23385850 (-)
LOC110489831 LOC106590310 coding upstream 59975 23399765 ~ 23441392 (-)
psme2 psme2 coding upstream 106040 23445830 ~ 23451633 (-)
G1271299 NA non-coding downstream 133094 23204587 ~ 23204788 (-)
G1271297 LOC106590247 non-coding downstream 134518 23196452 ~ 23203364 (-)
G1271287 NA non-coding downstream 159691 23177992 ~ 23178191 (-)
G1271285 NA non-coding downstream 161783 23175870 ~ 23176099 (-)
G1271201 NA non-coding downstream 311086 23023305 ~ 23026796 (-)
G1271370 NA non-coding upstream 30658 23370448 ~ 23370759 (-)
G1271376 NA non-coding upstream 65097 23404887 ~ 23407463 (-)
G1271556 NA non-coding upstream 397039 23736829 ~ 23737030 (-)
G1271557 NA non-coding upstream 397570 23737360 ~ 23737699 (-)
G1271559 NA non-coding upstream 399115 23738905 ~ 23739115 (-)
G1269265 NA other downstream 1534530 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 2377793 20958372 ~ 20960089 (-)
G1267452 NA other downstream 3047209 20290350 ~ 20290673 (-)
G1267414 NA other downstream 3069394 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3884112 19435018 ~ 19453770 (-)
G1271421 NA other upstream 373565 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 2706458 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3171735 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3215178 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3230488 26566351 ~ 26694581 (-)

Expression


Co-expression Network