LOC110489826 (LOC106590306)


Basic Information

Item Value
gene id LOC110489826
gene name LOC106590306
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23342993 ~ 23350387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562769.2
TCATATTGTGTAATATTTTCCAGCTATGTGTGGAGGAACATGGCGATACCGTGGAGGCACTGTTGGAGGTGGACTACAGGCGCTACGAGTACAAGTGTACTAGAAACCATATGCGGTTTTAATGGAAGGTCTGCTACGTTTGCTGCTTTGTCTTTGCGAGGAACGGGGGCCGTCGCTGGCTCGGGAAAGGAGAGACTATCCTCCAGGCCTGAAGACACAACCTCAATAGGCAACTATATTCTGACAAGtagGCACAAATCAAGGTTGCTTTACCCCACACAAAAGCCTTGCTGCTGCAAAAGGATACACAGTGATGCCAAGTTGAAGGACCCGTTCACACTAGCCCAAAAAGACTTGAACCATTTGTATGATGATATTAAAAAGGAGCTTTTTGTGTCCAAATCAGAGCTGAAGTCCTTATGTGACTACTACTTTGACGGGAAGGGCAAGGCCTTCCGACCAATGATAGTGGTGCTGATGGCCCGGGCTTGCAATATTCACAGCAACAGAGACGGagaTCTGCTCCCAGGTCAGCGGTCCATAGCTATGATCTCTGAAATGATCCACACCGCCAGCCTGGTCCACGATGATGTCATCGACGGCTCGGACAAGCGGAGGGGGAAGACCACCATCAACGAAGTGTGGGGGGAGCGAAAGGCCATTTTAGCTGGAGATTTCATCCTCTCGGCAGCCTCCATGGCTCTGGCCCGTATCGGCAACAACACAGTGGTGTCAGTGCTGTCTCAGGTCATAGAGGATCTGGTGCGAGGGGAATTCATGCAGCTGGGCTCCAAggagaacgagagcgagagatTCAAGCACTACCTCGAGAAGAGCTTCAAGAAGACTGCCAGTCTTATAGCGAACAGTTGTAAAGCAGTATCTATTCTGGTGAACTCGGACCCAGAGGTACAGGAAATAGCCTTTCAGTACGGGAGGAACGTAGGCATCGCCTTTCAGCTGGTGGATGATGTGCTGGACTTCACAGCATGCGCCAGCCAGCTAGGAAAGCCTTCGGCTACAGACCTTAAGCTGGGCCTGGCAACCGGACCAGTCTTATTTGCCTGTCAACAGTTTCCTGAGCTGCATGCTATGATTATGAGGAGGTTCAGCACCACTGGAGACGTGGATCGGGCCTGGCAGTATGTCCTGGAGAGTGATGGTGTGGATCAGACCAACTACCTGGCCCAGAGCTACTGCCGGGAAGCCATCCGGCAGATCAGCCTGCTCAGGCCCTCCCCGGAACGGGACGCCCTCATCAGGCTCACTGAGATGGTCCTCACACGCGACAAGTGAGCTCCCACCCCCAGGCTTCACTTCAGGCAGCTGTCCTGTGGAagcccccaccccccccctccccatggaGGGTTAGATGCCAGGATGATGAGGGAAGGTGGTTAATGTTTCATCAgtgacattcccagtgggtcctGATGGACCATTGTTTATGCAGCTTTTTGTACATAACATAAGTTAAAGGTGGAACTAAACGGTGCATACACAGGTTCTTCAGGACTGACTTTTGGGTGAGATGCACTGCTTCACATTACCCATGGCTTCTTTCTCCCCTCTGGAAAACCCTTAGGTCCTCACAGAAAAGAGTATATGTTATTGACACCAGTGGTTTTTAATGCTAGTCCTGTAGGACCCCTGCATCTACAGGTTTCTGAACCAACCCCCCACCTATACTTCAATTGAACTTCAACAAAGCGTTAAAATAGCACGTCAATGAGGCATGAACACAGACCTATATGCACAGGGACCCTCCAGGATCATTGTTGAAACATGATTTTCAGTGTATACAGTACTGTAAATGCAGCCACCGCCCTACTTCCAACTGGCAAGGCTGTTGTTATTACACGTGATGCTTGGGGCGGGATGGACCCTGCAGAATCATTGTAATTCCATGAGTCAAGATGGAGTatcattattgtgtgtgtgtggatctgtaTTAAGACCTTGCTCGAAGATCCGCCCGCAGTCCGCACCGTAACGACCAAAAGTCAAATGTTTGTCAGGGTGACTCTTGTCAATTGGAGAATGTTATATTGTAGGTATTTCCTGTCACAAGTGCTTAAAGGTCCCAAACAGTCATTCTGATTTCCATGTAACGCAGCCTTTTGAGTGACTAAAACATCACCCACAATATTTTAACGTTTgagaaataatgttttttttctctcatggAAAACTACCACCAGGAAGTCCGAAAAGATTGCATCAGTGGGTGGGGAGCtggtaggctgagtgggcggggagctggtaggctgagtgggcggggagctggtaggctgagtgggcggggagctggtaggctgagtgggcgggcgTTCCCAAGAACCGCCAATGTCAAGCAACAGATGCAGTGTTAGAGAGATTATCTCAAGCAAATTTGCTGAAACACAAAAGGAACTCGaacaacattgaaattgcatGCAACATCCAATCCTGTCAATAATCAAATCATCGTTTCACTAATTATTTGTTTATCCTGTTTGGTTATTGTAACTATCAATGTAGACAAAATGTTGGCTATATAATTTAGTGAGCTATCCCAAATGGAATTGTCAGCACTGTTTATCACGCTAGCTGGTTCACCTTGAACAATTTCATGTGTTTACAAAACATTGGGAACtattttcctaatattgagttgcaacccctttttgccctcagaacagcctcagtttgtcGGGGCCTGGACTCTGCAAGGTTTCGAAAGAGTTACATGGGGGATGTTGACTCGAATGCTTCCCACAGCTCTGTCAAGTTGactgg
>XM_036944087.1
CGTCATATTGTGTAATATTTTCCAGCTATGTGTGGAGGAACATGGCGATACCGTGGAGGCACTGTTGGAGGTGGACTACAGGCGCTACGAGTACAAGTGTACTAGAAACCATATGCGGTTTTAATGGAAGGTCTGCTACGTTTGCTGCTTTGTCTTTGCGAGGAACGGGGGCCGTCGCTGGCTCGGGAAAGGAGAGACTATCCTCCAGGCCTGAAGACACAACCTCAATAGGCAACTATATTCTGACAAGtagGCACAAATCAAGGTTGCTTTACCCCACACAAAAGCCTTGCTGCTGCAAAAGGATACACAGTGATGCCAAGTTGAAGGACCCGTTCACACTAGCCCAAAAAGACTTGAACCATTTGTATGATGATATTAAAAAGGAGCTTTTTGTGTCCAAATCAGAGCTGAAGTCCTTATGTGACTACTACTTTGACGGGAAGGGCAAGGCCTTCCGACCAATGATAGTGGTGCTGATGGCCCGGGCTTGCAATATTCACAGCAACAGAGACGGagaTCTGCTCCCAGGTCAGCGGTCCATAGCTATGATCTCTGAAATGATCCACACCGCCAGCCTGGTCCACGATGATGTCATCGACGGCTCGGACAAGCGGAGGGGGAAGACCACCATCAACGAAGTGTGGGGGGAGCGAAAGGCCATTTTAGCTGGAGATTTCATCCTCTCGGCAGCCTCCATGGCTCTGGCCCGTATCGGCAACAACACAGTGGTGTCAGTGCTGTCTCAGGTCATAGAGGATCTGGTGCGAGGGGAATTCATGCAGCTGGGCTCCAAggagaacgagagcgagagatTCAAGCACTACCTCGAGAAGAGCTTCAAGAAGACTGCCAGTCTTATAGCGAACAGTTGTAAAGCAGTATCTATTCTGGTGAACTCGGACCCAGAGGTACAGGAAATAGCCTTTCAGTACGGGAGGAACGTAGGCATCGCCTTTCAGTTTCCTGAGCTGCATGCTATGATTATGAGGAGGTTCAGCACCACTGGAGACGTGGATCGGGCCTGGCAGTATGTCCTGGAGAGTGATGGTGTGGATCAGACCAACTACCTGGCCCAGAGCTACTGCCGGGAAGCCATCCGGCAGATCAGCCTGCTCAGGCCCTCCCCGGAACGGGACGCCCTCATCAGGCTCACTGAGATGGTCCTCACACGCGACAAGTGAGCTCCCACCCCCAGGCTTCACTTCAGGCAGCTGTCCTGTGGAagcccccaccccccccctccccatggaGGGTTAGATGCCAGGATGATGAGGGAAGGTGGTTAATGTTTCATCAgtgacattcccagtgggtcctGATGGACCATTGTTTATGCAGCTTTTTGTACATAACATAAGTTAAAGGTGGAACTAAACGGTGCATACACAGGTTCTTCAGGACTGACTTTTGGGTGAGATGCACTGCTTCACATTACCCATGGCTTCTTTCTCCCCTCTGGAAAACCCTTAGGTCCTCACAGAAAAGAGTATATGTTATTGACACCAGTGGTTTTTAATGCTAGTCCTGTAGGACCCCTGCATCTACAGGTTTCTGAACCAACCCCCCACCTATACTTCAATTGAACTTCAACAAAGCGTTAAAATAGCACGTCAATGAGGCATGAACACAGACCTATATGCACAGGGACCCTCCAGGATCATTGTTGAAACATGATTTTCAGTGTATACAGTACTGTAAATGCAGCCACCGCCCTACTTCCAACTGGCAAGGCTGTTGTTATTACACGTGATGCTTGGGGCGGGATGGACCCTGCAGAATCATTGTAATTCCATGAGTCAAGATGGAGTatcattattgtgtgtgtgtggatctgtaTTAAGACCTTGCTCGAAGATCCGCCCGCAGTCCGCACCGTAACGACCAAAAGTCAAATGTTTGTCAGGGTGACTCTTGTCAATTGGAGAATGTTATATTGTAGGTATTTCCTGTCACAAGTGCTTAAAGGTCCCAAACAGTCATTCTGATTTCCATGTAACGCAGCCTTTTGAGTGACTAAAACATCACCCACAATATTTTAACGTTTgagaaataatgttttttttctctcatggAAAACTACCACCAGGAAGTCCGAAAAGATTGCATCAGTGGGTGGGGAGCtggtaggctgagtgggcggggagctggtaggctgagtgggcggggagctggtaggctgagtgggcggggagctggtaggctgagtgggcgggcgTTCCCAAGAACCGCCAATGTCAAGCAACAGATGCAGTGTTAGAGAGATTATCTCAAGCAAATTTGCTGAAACACAAAAGGAACTCGaacaacattgaaattgcatGCAACATCCAATCCTGTCAATAATCAAATCATCGTTTCACTAATTATTTGTTTATCCTGTTTGGTTATTGTAACTATCAATGTAGACAAAATGTTGGCTATATAATTTAGTGAGCTATCCCAAATGGAATTGTCAGCACTGTTTATCACGCTAGCTGGTTCACCTTGAACAATTTCATGTGTTTACAAAACATTGGGAACtattttcctaatattgagttgcaacccctttttgccctcagaacagcctcagtttgtcGGGGCCTGGACTCTGCAAGGTTTCGAAAGAGTTACATGGGGGATGTTGACTCGAATGCTTCCCACAGCTCTGTCAAGTTGactgg
>XM_021562770.2
AGGAGCTTTTTGTGTCCAAATCAGAGCTGAAGTCCTTATGTGACTACTACTTTGACGGGAAGGGCAAGGCCTTCCGACCAATGATAGTGGTGCTGATGGCCCGGGCTTGCAATATTCACAGCAACAGAGACGGCACACACACCAGGAACCACTTGGCACAAGTGACTGGGGAGAATGCACATTTTTAGAAAGagaTCTGCTCCCAGGTCAGCGGTCCATAGCTATGATCTCTGAAATGATCCACACCGCCAGCCTGGTCCACGATGATGTCATCGACGGCTCGGACAAGCGGAGGGGGAAGACCACCATCAACGAAGTGTGGGGGGAGCGAAAGGCCATTTTAGCTGGAGATTTCATCCTCTCGGCAGCCTCCATGGCTCTGGCCCGTATCGGCAACAACACAGTGGTGTCAGTGCTGTCTCAGGTCATAGAGGATCTGGTGCGAGGGGAATTCATGCAGCTGGGCTCCAAggagaacgagagcgagagatTCAAGCACTACCTCGAGAAGAGCTTCAAGAAGACTGCCAGTCTTATAGCGAACAGTTGTAAAGCAGTATCTATTCTGGTGAACTCGGACCCAGAGGTACAGGAAATAGCCTTTCAGTACGGGAGGAACGTAGGCATCGCCTTTCAGCTGGTGGATGATGTGCTGGACTTCACAGCATGCGCCAGCCAGCTAGGAAAGCCTTCGGCTACAGACCTTAAGCTGGGCCTGGCAACCGGACCAGTCTTATTTGCCTGTCAACAGTTTCCTGAGCTGCATGCTATGATTATGAGGAGGTTCAGCACCACTGGAGACGTGGATCGGGCCTGGCAGTATGTCCTGGAGAGTGATGGTGTGGATCAGACCAACTACCTGGCCCAGAGCTACTGCCGGGAAGCCATCCGGCAGATCAGCCTGCTCAGGCCCTCCCCGGAACGGGACGCCCTCATCAGGCTCACTGAGATGGTCCTCACACGCGACAAGTGA

Function

NR:

description
decaprenyl-diphosphate synthase subunit 1 isoform X1

GO: NA

KEGG:

id description
K05355 hexPS, COQ1; hexaprenyl-diphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562769.2 False 2778 mRNA 0.49 11 23342993 23350385
XM_036944087.1 False 2666 mRNA 0.48 10 23342993 23350387
XM_021562770.2 True 973 mRNA 0.54 9 23344475 23346984

Neighbor

gene id symbol gene type direction distance location
LOC110489827 NA coding downstream 3203 23337882 ~ 23339790 (-)
LOC118938792 NA coding downstream 5270 23335472 ~ 23337723 (-)
acbd5a acbd5 coding downstream 67848 23253886 ~ 23275145 (-)
LOC110489819 LOC106590300 coding downstream 100679 23221692 ~ 23242314 (-)
pks1 LOC106590299 coding downstream 121425 23212117 ~ 23221568 (-)
LOC110489829 LOC106590307 coding upstream 20780 23371167 ~ 23378986 (-)
LOC110489830 LOC106590309 coding upstream 29392 23379779 ~ 23385850 (-)
LOC110489831 LOC106590310 coding upstream 49378 23399765 ~ 23441392 (-)
psme2 psme2 coding upstream 95443 23445830 ~ 23451633 (-)
LOC110489841 LOC106590235 coding upstream 678411 24028798 ~ 24124676 (-)
G1271299 NA non-coding downstream 138205 23204587 ~ 23204788 (-)
G1271297 LOC106590247 non-coding downstream 139629 23196452 ~ 23203364 (-)
G1271287 NA non-coding downstream 164802 23177992 ~ 23178191 (-)
G1271285 NA non-coding downstream 166894 23175870 ~ 23176099 (-)
G1271201 NA non-coding downstream 316197 23023305 ~ 23026796 (-)
G1271370 NA non-coding upstream 20061 23370448 ~ 23370759 (-)
G1271376 NA non-coding upstream 54500 23404887 ~ 23407463 (-)
G1271556 NA non-coding upstream 386442 23736829 ~ 23737030 (-)
G1271557 NA non-coding upstream 386973 23737360 ~ 23737699 (-)
G1271559 NA non-coding upstream 388518 23738905 ~ 23739115 (-)
G1269265 NA other downstream 1539641 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 2382904 20958372 ~ 20960089 (-)
G1267452 NA other downstream 3052320 20290350 ~ 20290673 (-)
G1267414 NA other downstream 3074505 20267966 ~ 20268488 (-)
G1266708 LOC106590345 other downstream 3889223 19435018 ~ 19453770 (-)
G1271421 NA other upstream 362968 23713355 ~ 23728939 (-)
G1274532 LOC106590196 other upstream 2695861 26046058 ~ 26048599 (-)
G1275015 NA other upstream 3161138 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 3204581 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 3219891 26566351 ~ 26694581 (-)

Expression


Co-expression Network