LOC110510445 (LOC106590311)


Basic Information

Item Value
gene id LOC110510445
gene name LOC106590311
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 23387536 ~ 23399121 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944099.1
TGCCCAGTATCCTCATTTGGCCCCTGTTGTCTTGCGCGGCGCCTGCGTTGTCGAGAAAGGTTTCTTGCTGGTTGCCTCTCGCGGCCTTAATTGTGTAAATTCGGCTTCCGGAGCTAGATACTTTCTGTAATAGCAAGAAAAGACCGGTCGGCATCGATTATTGCATATTGCCTTAAATTAGCTAGTGTAAGGAAATATGTTTGTTTAATATCTTAACAGCCATACATACATGCATAGCTAGCTCATTCTAGTAATGTAACGGTTGCTTGTTAGCCAGCTCACAGTCTAGTTAACGCCGACGTCTAAAAGCTAGCTAACGAGCTTAGCAAATGCTAACCCTTCCTAGCTAGCGCTACGTTGCTTGCTTACTTTGGATATTGTTATTTACCTGCTTGCTTAGCTAGGTCTATGAGAAACTATACGGAACTACCTCATCACTATAGTTAGGTAGCTGAGTAATTTGGTTGGCAGGATATATGTGTGGGAGTAACGTTCATTCCCGAGTCCGGGCAAAAAGTACCCGGAAGGGACGCGCAACTGCCGCCTTTGTTGATGTATGATCAAGCTAACATTACTGTAGACAATAGCTAATAGTTGCAGCGATTAGACTGTGTGGGATCCGGCAATCAAGCTTTCAAGTCTAATTTGGGATAAATGGTTCGAAAAGAAAGCCCAGCACTGATTTAGCTGCATCACTATCACCACCACAGCCAGTCTGCATCTCCTGTCCCCACTACCTCCATCCAGTCCCCTGTGCCTGCCTGTCTTGTCTGCTCTGAGAGAGACCGGTCTATCTGGGCTATACAGAGCAACGAAGAACAAACACAGCCGTCATTGAAGCACCAGCACTGACTGGTTTTTGGCTCTAGAGACCACACCAAGGACTTAGACAGAGAGCCCAGTTGGAGGGTAACTTCCTGCGTCACTCTTAATTAACACTAAGAGGGGAACCAACCTGATTTTGATCACCCTGCATCCTGTCTTCTCTTCCATAACATAGGAACAGAAGGAGTTGctactttatttttttttgctgcaGAGGTCTTTATCCTGGTCCTGGGACACTGCGTATTGTTTTGGTCAACACCTCTGTTCTGCCCTGCCGACATCAGCCAACGGTGGTGTCACAAAGCAGAGGGGTCTCTGTACCCTGTTGTCACTTTGATTTATTCTCGCACATTCCCCCCCCCCGGGTTGGTTTTGAGTCATCACCGCTGTCTGCCTGCCGACATCAGTCATCACAAAGCAGAGGGGTCTCTTTCTGTAGGAGTCTGCAGTAGCTTTTAGGTCATTTATCCCCCCCCCATTTGGTTTTGGAGCCCGGTTCTTTTACCGGCTGCTTGAACTGCTGAAACTGGGGCGCGATTCATGGGATGCAACCATGTCGGATCTCAGTGAGCGCAGGCCAGTTAACATGGACTACGCGGTCTCCCTGCTGGAGCAGCTCAACTTCTTCTATGAGCAGAAGTTACTGACTGACGTGGTGCTGCTGGTGGAGGACAACGAGTTCCCATGTCACAAGATGGTCCTGGCCACATGTAGCTCCTATTTCAGGGCAATGTTTATGAGTGGTCTGTCTGAGAGTAAACAGACTAATGTTCACCTGAAGAACGTGGACCCTGCCACTCTCCAGATCATCATCACCTACGCCTATACAGGCAACCTGGCTATCAATGACAGCACTGTGGAGCCACTCTATGAGACCGCCTGCTTCCTACAGGTAGAGGATGTGCTACTGCAGTGCAGGGACTACCTGGTGAAGAAGATCCATGCAGACAACTGTGTCCGGATGCTGAGCATCGGGGATCTGTTCTCCTGTGTGGAGCTGAAGCAGAGCGCCAAGCGCATGGTGGAACACAAGTTCCCCGTGGTCTACCGTCAGGAGGCCTTCCTACAGCTGTCCCATGAGTTGCTGGTCGACGTGCTGTGCTCAGACAACCTCAACGTAGAGAAGGAGGAGACGGTGAGGGAGGCTGCCATGCTGTGGCTGGAGTATAACATGGAGGCTAGGTCCCAGTACTTGTCCTCAGTTCTCAGCCAGATCCGCATCGACGCTCTCTCCGAGGTGACTCAGCGTGCCTGGTTCCAGGGCCTACCGCCTAACGACAAGTCTGTCGTAGTGCAGGGCCTCTACAAGTCCATGCCCAAGTTCTTCAAACCCCGCCTTGGCATGACAAAGGAGGAGATGCTCATCTTCATGGAGGCCACGTCAGAGTGGCCATCTGACATGGGTCAGGTGATGGCGGGCCCCAACCACACGGTGGTGTGTTACAGCCCGCAGGCCGAGAAGGTCTACAAGCTCAGCAATCCGCCCGGCGACCTCCAGAAGGTTGGGACGCTCGTCACACCCGACAACGACGTGTTCATTGCCGGCGGGCAAATCCCGCTGAAGAACTCTATCGCCAACCACGGGAAAAGCGGCGGCAAGCAACAGGCAGTGTTCCGCTCAGTGGATAGCTTCTTCTGGTTTGACGCCCAGCAGAATGCTTGGGTGCCTAAGACGCCCATGCTGTGTGCCCGCATCAAGCCCTCTCTGGTCTACTGCGAGGGTTACATCTACGCCATCGGGGGGGACAACGTAGGCGGGGAGCTAAATAAACGTACCGTAGAACGCTATGACTGTGAGAAAGACGAGTGGGCTATGATGAGCCCCCTCCCTTGCGCCTGGAACTGGACCACGTCCGTAGCAGCCCACGACTGTATCTACGTGATGACCCATGACCTCATGTACTGCTACTTCCCTCGCGCTGACACCTGGGTAGAGATGGCCATGAGGAAGACAAGTCGCTGCTTCGCCTCCGCTGCCACCTTTGGTGACCTCATCTTCTACATTGGGGGGCTCCACGTTGTCTCCAACTCGGGCGTCCGCATGCCCACCAGCACCATCGACGGTTCCTCCGTCACCGTGGAGATCTACGACGTCGGCAAGAACGAGTGGCGCCTGGCCGCCAACATCCCTGCCAAGCGCTACTCGGACCCGTGCGTGCGGGCCGTGGTGCTCCTTGGCGCTCTGTGCATCTTCATGCGGGAGACTCACATGAACGAGCGCGCCAAGTACGCCATCTACCAGTACGACCTGGAGCTGGACCGCTGGTACCTCAAGCAGCCCGTGTCTGAGCGCGTGCTCTGGGACCTGGGGAAGGACTTCCGCTGCGCCGTGGGGAAGCTATACCCATCCTGTCTGGAAGAATCCCCGTGGAAACCACCCACCTACCTGTTTTCCCCCGACGGGGCTGAGGAGTTTGAGGTGGACGGGGAGATGGTCTCCCTCCCTCACATATAGCTCTTAACCTTCCACCTCTCTGCCCCCAAACGGAGTCCCCGAATTGCCCTCTGAACTCTGGGTGTGACGTGTCGAGGGATTGACCTGAAAGCCAGAGGGGTAGGTTTGATGTCTGTTCCAAAGGGATCTGAGCGCTACAAGGCTGTTCTGCTGGCTGGCTGTTGCTGACAAACAAGCTTATACAAAGCCTCAGACATTGAAAATATAGGAGAGAAACTAAAGTAATATGGGAAAAGtagatttgtttttttttgtctgttgCAACTTCAagtctgttatactgtttctacAATGTGATAATTGAAAGTTGACTGATTTGTGATGATGCACTTACTGGCGAAAAGCTCCTTGGAAAAACTGTACCAAAATCCTCCTGGTCTCCACCTCTTTCTATCACCACTGTTGTAAACCCACATCCATCTCTCCTAGGGACACGTGGCCTGTGTCTCAGCcatatggtaccctattccctaagtagtgcactaaataggtaatagggtgccattttggatgctcCTAGTATAGGAACATACAGGGCcaagtgttgggggggggggggggttctaggtGGTGACTGCAGGTCCAGTCACTAcctgtttttttctttttctttaccTCTGCTACAGACACGCAactccctgcctctcccctcaTTCCTCTAGTCCCCTGCTCACACTAACACCACTCAAGCCTGCCTGTCTCTTAGGCTgtgtcccccaaatggcacctgactccctacttttgaccagggcgcaAAGGGCCACCATAGGCTTGTTAAGCTGGCACTGTGGCGCTCTTGCCAAAAGTAGCATcctatatagggttccatttgggaggcATCCTTAGTCAATCTCTCTGGACACAGGTCTTCCACAGAGCCAGCCAGCGGTTTACAGAACGGAGCTCACCCTAACCAACCGCCATCTCATCGTCGTGATGGGAGGTTTTATGCCGGctcttattttatttttgacaAGCGCGGGTCTCTGCAACAACACACGCCTCCTTCACGCTATCTCAATACTCTCATCAACTATAGATTTTTGGGctcatgcatttaaaaaaatatataatacattCCCCCTAAGCTgctgaaatatatataaaaatatatatttttcatgtttaaaaaataaacttTTAGTGTGGGGGAAAACAACCAGGTTCTATTTTgtattagtattttttttattttaaatcagacattactgtagtgtgATTGTGTTTAGGTATCCACCCCCCATCAGATTATTTTCTTGTGTGAAATACTGAGGAATCTTGCTGCTGATTGGGTCTGGGAAGGAGGGCTGGCCCAGTgctgttgctatggaaattgtccAGGCAACCACTAGCGGTAGTGGAGAACGACTGGAGGGTGGTATGGGAGGGAAGGAGCGGACGGAGCTGCTTCATGGTTCCTACCTTAAACATGAGCACAGGTGCTTCATGACAAACCTTACTAGCATGTTTGGCTGCATCATGTTCCTTTGGCACTGTATTTTGAATGAACGTTAATTTATTAAAAAACATACCAAAACGTT
>TU1451523
accTCTGCTACAGACACGCAactccctgcctctcccctcaTTCCTCTAGTCCCCTGCTCACACTAACACCACTCAAGCCTGCCTGTCTCTTAGGCTgtgtcccccaaatggcacctgactccctacttttgaccagggcgcaAAGGGCCACCATAGGCTTGTTAAGCTGGCACTGTGGCGCTCTTGCCAAAAGTAGCATcctatatagggttccatttgggaggcATCCTTAGTCAATCTCTCTGGACACAGGTCTTCCACAGAGCCAGCCAGCGGTTTACAGAACGGAGCTCACCCTAACCAACCGCCATCTCATCGTCGTGATGGGAGGTTTTATGCCGGctcttattttatttttgacaAGCGCGGGTCTCTGCAACAACACACGCCTCCTTCACGCTATCTCAATACTCTCATCAACTATAGATTTTTGGGctcatgcatttaaaaaaatatataatacattCCCCCTAAGCTgctgaaatatatataaaaatatatatttttcatgtttaaaaaataaacttTTAGTGTGGGGGAAAACAACCAGGTTCTATTTTgtattagtattttttttattttaaatcagacattactgtagtgtgATTGTGTTTAGGTATCCACCCCCCATCAGATTATTTTCTTGTGTGAAATACTGAGGAATCTTGCTGCTGATTGGGTCTGGGAAGGAGGGCTGGCCCAGTgctgttgctatggaaattgtccAGGCAACCACTAGCGGTAGTGGAGAACGACTGGAGGGTGGTATGGGAGGGAAGGAGCGGACGGAGCTGCTTCATGGTTCCTACCTTAAACATGAGCACAGGTGCTTCATGACAAACCTTACTAGCATGTTTGGCTGCATCATGTTCCTTTGGCACTGTATTTTGAATGAACGTTAATTTATT
>TU1451524
accTCTGCTACAGACACGCAactccctgcctctcccctcaTTCCTCTAGTCCCCTGCTCACACTAACACCACTCAAGCCTGCCTGTCTCTTAGGCTgtgtcccccaaatggcacctgactccctacttttgaccagggcgcaAAGGGCCACCATAGGCTTGTTAAGCTGGCACTGTGGCGCTCTTGCCAAAAGTAGCATcctatatagggttccatttgggaggcATCCTTAGTCAATCTCTCTGGACACAGGTCTTCCACAGAGCCAGCCAGCGGTTTACAGAACGGAGCTCACCCTAACCAACCGCCATCTCATCGTCGTGATGGGAGGTTTTATGCCGGctcttattttatttttgacaAGCGCGGGTCTCTGCAACAACACACGCCTCCTTCACGCTATCTCAATACTCTCATCAACTATAGATTTTTGGGctcatgcatttaaaaaaatatataatacattCCCCCTAAGCTgctgaaatatatataaaaatatatatttttcatgtttaaaaaataaacttTTAGTGTGGGGGAAAACAACCAGGTTCTATTTTgtattagtattttttttattttaaatcagacattactgtagtgtgATTGTGTTTAGGTATCCACCCCCCATCAGATTATTTTCTTGTGTGAAATACTGAGGAATCTTGCTGCTGATTGGGTCTGGGAAGGAGGGCTGGCCCAGTgctgttgctatggaaattgtccAGGCAACCACTAGCGGTAGTGGAGAACGACTGGAGGGTGGTATGGGAGGGAAGGAGCGGACGGAGCTGCTTCATGGTTCCTACCTTAAACATGAGCACAGGTGCTTCATGACAAACCTTACTAGCATGTTTGGCTGCATCATGTTCCTTTGGCACTGTATTTTGAATGAACGTTAATTTATTAAAAAACATACCAAAACGTTCTCGAAAACAATGACTTGTTATTTTCACATTGGTTGACGCATGCTTGGTTTTGTTTTAAACATGTTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944099.1 False 4824 mRNA 0.51 5 23387536 23399051
TU1451523 False 908 lncRNA 0.45 1 23398124 23399031
TU1451524 True 998 lncRNA 0.44 1 23398124 23399121

Neighbor

gene id symbol gene type direction distance location
LOC110489828 LOC106590304 coding upstream 18724 23350408 ~ 23368812 (+)
LOC110489823 LOC106590302 coding upstream 45441 23275513 ~ 23342095 (+)
mastl LOC106590301 coding upstream 133750 23248095 ~ 23253786 (+)
ptchd3a LOC106590298 coding upstream 175639 23204933 ~ 23211897 (+)
LOC110489817 LOC106590247 coding upstream 184177 23189104 ~ 23203359 (+)
LOC110489836 lsm5 coding downstream 40791 23439842 ~ 23445587 (+)
prex2 prex2 coding downstream 59057 23458108 ~ 23658840 (+)
LOC110489839 LOC106590236 coding downstream 267618 23666471 ~ 23836438 (+)
gig2e NA coding downstream 299129 23698180 ~ 23730175 (+)
LOC118938911 NA coding downstream 458362 23857413 ~ 23904392 (+)
G1270647 LOC106590309 non-coding upstream 2474 23384754 ~ 23385062 (+)
G1270640 NA non-coding upstream 11906 23375395 ~ 23375630 (+)
G1270639 LOC106590307 non-coding upstream 12263 23374790 ~ 23375273 (+)
G1270563 NA non-coding upstream 126728 23260257 ~ 23260808 (+)
G1270565 LOC106590299 non-coding upstream 169071 23212121 ~ 23218465 (+)
G1270651 NA non-coding downstream 4028 23403079 ~ 23405314 (+)
G1270669 psme2 non-coding downstream 46787 23445838 ~ 23451494 (+)
G1270844 NA non-coding downstream 313743 23712794 ~ 23716562 (+)
G1270848 NA non-coding downstream 322038 23721089 ~ 23723367 (+)
G1270643 NA other upstream 9976 23377308 ~ 23377560 (+)
LOC110489812 rdh12 other upstream 250815 23132828 ~ 23146739 (+)
slc12a7b LOC106590280 other upstream 1593283 21729755 ~ 21794253 (+)
G1267949 pck2 other upstream 2546138 20840295 ~ 20841398 (+)
epb41l3a LOC106590342 other upstream 3707431 19598284 ~ 19680110 (+)
G1270652 NA other downstream 7609 23406660 ~ 23408002 (+)
G1271852 LOC106584099 other downstream 847372 24246423 ~ 24250283 (+)
G1272220 LOC106590226 other downstream 989361 24388412 ~ 24403661 (+)

Expression


Co-expression Network