si:ch211-37e10.2 (LOC106590232)


Basic Information

Item Value
gene id si:ch211-37e10.2
gene name LOC106590232
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 24186466 ~ 24192913 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562786.2
GGGAAGGGTTAATTTGCGGCTCTGGAAACCTGATGCTAATTAAGTCTTTGGAATGTCACATACTAGCATTCTATTCCAGAAGCCTTCAGAGTGGGTCAGACATGGAGTGAGGGGAGCGATGCACGTTTCAAATTGTTTTCTTATCTTATTGACGACATTCAAAAAGGGCATCCACACCAAATACCAGAGCCACAGGGAGATAAACAAATGCAAAATGGCATTGTCCAGAACAGTGCTGTTGTTATTGGTGTACTCGTTATCACTACATGACACAGTAAGAGGTGTCGCAGAGATATGCCGGGGGACTCACTGCCACGGTGGCGAGACTGGGGATCCCAGACCGTGCGTCGGAGCCCAATGCCTGGGGGGTAGATCATCCAGACCACCGCGGCAATATAATCCAACAACACAGGGCAGATCGGGACAGGCAGTCCCCAGCCAGCACCATGTGTACCACAGCTCTCAGTCAAGAGGAGACACAACAGACACGTATGTTGTTCAACCACAGCGCGGTAGGCACATTGACAGCGTTAGAGAAAGCGCAAGGATGCAAACGTCTGAAGTTTTCGGTTCAGGGTGTACTGGAGCGGATTGCGTTACTCCTCAGAAACAACTCCACGCTTTTAACGACACCAGAGACTGCAAAGGAATCGAATGTAAATTACCACTAAGGATACGGCCAAAGCCCCGTCCAAAAGATTGTGTGGGAGAGGGCTGTCTGGCTGATGATGCCGCAGCTTCCAGCCAGCCTTTCCCTGTCCATATGCCGGACAGAGCTGCTCAGTTTCTGGGAGAATTTCCAGAGTTTGGATATCCTGCATCTGAACTTGGCAGTGCGCCTTTGGGAGTGCAGCTCACATGTGACATTAAACCAGGGGAGAATGAGGTGCCTTCAGAGGATGCCCTCATCTTACACCTCCAACTGGCTAAGGGGCAGGAGAAGCTGGTAGAGGCCCTTCAGGCTCAGCAGACGATCATACGCGACCTGCAGCAAAAGCTAGCCGAACAGCAGGGGGCGCTGTTGGCCCAGCAGCGGGAGATCCTGGAGCAGCAGCGCCGCATGTACGAGCAGATGGACGTGGTCAAGGCACAGTATGGCCTGCTCTCTGACACTGTCAAACAGGTGTCCTTCCAAGGCCTCCAAGGGGAGCTCCAGAGCTACTTCGAGAGCCACCTGGCAGGCCTCCAGAGCCAGGCTCGGAGCCACCTGCAGAAGTCCTATGCCGTTCGCAAGGACATGCACATGGATGTAGATGCTAAGTTGATGGATGTGGTCGGGGAAGCCCACCTTCCGCACCCCCTGCTGGGGTGTGGCAACCCGTGTGGACCGGAGGATTACTGTGACTTCCAGAGGGAGCCGCCGCAGTGTGAGAAGTGTACCATGTGCCCACCGGGTTTCTTCCTGGTCTCCCAGTGCTCTCCCAATGCAGACAGAATATGCCAGGACAGAGACGAATGCCTTGAATTACCAAACCTATGTGGACAGGGAGTGAAGTGCCTTAACACTCCAGGAGGGTTCAGGTGCCTGGGCATGTCGGAAAGGGAGGCTGCTGCTGGAGTATGTGGCCATGACTACTTCTACAACCAGGAGCTTCCGGAGTGCCAGGCTTGTTCTGACTGCAATGGAGAACCCATTGCAATCCACTGTACAGCCACCAGTGATTCTGTCTGTGGACCCTTCACAGACAACCTGATGTCCCAGTCCTGGGGTGCCACCGTGACCTTGCCCCCAGCCATGGCCCCTGGCAGCCACATCTTCCCTGGCCTCCAGCTCAATGTCCAGAGCAAAGAAGTCAGCGACTTGCTGTCCAACCACGCCGGCCGGCTATCCTTCCAGCAGCACGGCTTGATGTGGCTGGACCATAACTTTGCCCTAAAGCACAATTGCAGGAACTTCCTCCAGGTGGGCATGCGGCTCAACAGCAGTCAAGAGGAGGAGGGCCACGACCTCAGTGGGGTCCGCATTGAGCAGCCAGACGGGAAGTACTTCCAGGGAGTTAGTGTTAGTGGCATCGCAGAGGTCGAGCCCAACCACATGCTGACTCTGTTCCTGAAGAGTCCCAACCAGCATTGCAACCAGAGCAAGGACCTTCATGTCTACGAACTCAACGGGCCTTCCTTCAGCATGCTCTGGCTGTCCCACGATACTGGAGCCGTGGCCATGACCGCACAGATGTCAATGTCAGCCCACTACCAGACCAACTACCGTCCAACCTTCCGCATCACCTCCGTCTCTGACCCTTACATGGTGGGGTTGACCCACGACAGCCGCGGGGTGCGCTTCACAGAGAGTGGCGTGGTTAAATTTGTCCTACAGCAAGCGCTGTACTCCATGGGCCACACCTGCATCCGAGAGGGCTTCTCTCTGGTGGCCTACGCCAACCGCAACGGGACCAACCAGGAATTGATGCAGGCATTCAAGTCGGGCGTCAACTACAGGGACACATCCATCACCCTTTCTGGGGCTGTCAGGGTGGATAGTGGGCACTCGCTTAGTTTCGAGATCCTATCCCCATCCCAGTGTAATATCCGCTACTTTGGAGACAGTACTGGGATCAGTATACTGAGCCTCATCTGGATCCCCTCAGCTGTCTCCTCTGCCCTGACTGCCACAGTGTCCAGGACAGGCCTTCCCTCTGGAGTCGTCCGCAACAAAGCCCTCCTCTTCCAGCAGGTTAGCCCAGAATCAGACCAAGTGCGCCTGGCCCATTCTGGGGAACCCAACGCCCAAAAGAACTTTGTCTTCTGGGGGGATGGGACAGCTAACGTGGCCCTCAACCTGAAGCTGATCCATTCGTGTAACGTGGTGAAGCTCACTCTGCACCGGCAGGGGGGCAGCGGGGAGGGTGGACAGGCTACACCCGTGTCccagcagatttctgggcacatGCCTGAGGGCAGCGAGTGGGCCAACGTGGGCCTGAGGGCCTCCTTCCAGGTCCAAAATGGTACAGCCATCTATGTGACACTGGACTGCGTACGTGGTCGTGTTAACCAGATCACCCACAAGGGAGGCACTAACATATCCATCCTCTGGGTGGCGTTGTGATCCAAAACGAggaccttttttgttgttgactctGTCACATTTTGTCAACACGTTTTAGAAACAAACATGGTTTCGCACAATTTCAAATTACAGAGCAAATTTGGAACCTCACTTAACGTCACAGGTGCTTCCAAGGTAGAGGAACTTTTTTGAAATGGAAGGTTGTGTTTTGTCTAATGTTAACATTTTTGTTATGTTAATGTTGTTTGTATCTTATGACTGATACTTTGTTGATTCATTGATTTTTTTTGGATGACAAGTACTGATGTTGCTCGAAGTACTTCGGCTGGTTGAGCAGTGACCAATTATTTTGTATGAAGTAAGctgaatgatgtgtgtgtgtttataatgttTGTTATGCTTTTTATTATAATATATCTTATTCCATCAATTTCCTGCACATGAATATGAAATGTTGCCTTTCAATGCGTGTGTATTAGAGTATTTTGATAAAAGAgcatttaaatattttaaaatgtattatatttaacTTTCACCAAgctgttatttttatttcatattttcaatAACTTATTCTGAATTTTATGTCACTTAAAATAATAGTAGAGTAACATTGGGAAAAAATGTATCGATATACTATTGGAAACAATACCTTACTTCATAAACAGAATTGTACTTCAACCTCTTTTGATAAAACAATCACAGTTGTGTCAATACTGTGCTTCTAGGATACATGTATGTCAAACAATAGAATTATGTTACAAATATTTATGTGACCATGGAACTACAGTATAAGTGTAGTATTCATTAcatatacttatgtaaatggtgTAGGGAAAGTTTATCCTCAGATTATTATCATTTTTACATTTGATAATTCACACAAATCAGGTTTTATGTAGCAACAATCTGTTAACTGCATAATGTATGTTGTGATTTAGCCTCAATACTCTTGGCCCTGTGGAAGTGCTGCCTCTGCATAGCATTCTTAATTGCCTTTGTGCATGTTCTGTCCCCCAAACAATTAGACACAATGAAGTGTTTCAGCGATTTGGCAGCAAAGCGGTCGGTCACTGAAATACTTCTGCTTTATTTTCACTACGCTATGCAATGCTTGGTGATTTGTTTGACTTCACATGTATTGTAGAACAACAATGAGTGTATTCTTGTTTTTTTCAAAGCCAAATAAAAATTCACACATTTTGTAA
>TU1452863
ACAGAATTGTACTTCAACCTCTTTTGATAAAACAATCACAGTTGTGTCAATACTGTGCTTCTAGGATACATGTATGTCAAACAATAGAATTATGTTACAAATATTTATGTGACCATGGAACTACAGTATAAGTGTAGTATTCATTAcatatacttatgtaaatggtgTAGGGAAAGTTTATCCTCAGATTATTATCATTTTTACATTTGATAATTCACACAAATCAGGTTTTATGTAGCAACAATCTGTTAACTGCATAATGTATGTTGTGATTTAGCCTCAATACTCTTGGCCCTGTGGAAGTGCTGCCTCTGCATAGCATTCTTAGACACAATGAAGTGTTTCAGCGATTTGGCAGCAAAGCGGTCGGTCACTGAAATACTTCTGCTTTATTTTCACTACGCTATGCAATGCTTGGTGATTTGTTTGACTTCACATGTATTGTAGAACAACAATGAGTGTATTCTTGTTTTTTTCAAAGCCAAATAAAAATTCACACATTTT

Function

NR:

description
PREDICTED: uncharacterized protein LOC104942374

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562786.2 False 4218 mRNA 0.49 4 24186466 24192913
TU1452863 True 504 lncRNA 0.34 2 24192370 24192909

Neighbor

gene id symbol gene type direction distance location
sulf1 sulf1 coding upstream 158665 23950432 ~ 24027801 (+)
LOC118938911 NA coding upstream 282074 23857413 ~ 23904392 (+)
LOC110489839 LOC106590236 coding upstream 350028 23666471 ~ 23836438 (+)
gig2e NA coding upstream 456291 23698180 ~ 23730175 (+)
prex2 prex2 coding upstream 527626 23458108 ~ 23658840 (+)
nle1 nle1 coding downstream 20753 24213666 ~ 24229710 (+)
prtfdc1a LOC106590221 coding downstream 411589 24604502 ~ 24618190 (+)
LOC110489855 arhgap21 coding downstream 432556 24625469 ~ 24731493 (+)
chchd7 chch7 coding downstream 566939 24759852 ~ 24762965 (+)
LOC110489862 fam110b coding downstream 633695 24826608 ~ 24829935 (+)
G1271784 NA non-coding upstream 80002 24105635 ~ 24106464 (+)
G1271648 NA non-coding upstream 156938 24029359 ~ 24029528 (+)
G1271649 NA non-coding upstream 157757 24028385 ~ 24028709 (+)
G1271734 NA non-coding upstream 160770 24025220 ~ 24025696 (+)
G1271733 NA non-coding upstream 167955 24018279 ~ 24018511 (+)
G1271829 NA non-coding downstream 19506 24212419 ~ 24212672 (+)
G1271837 NA non-coding downstream 29561 24222474 ~ 24223494 (+)
G1271840 NA non-coding downstream 38472 24231385 ~ 24231679 (+)
G1271841 NA non-coding downstream 38814 24231727 ~ 24231963 (+)
G1271842 NA non-coding downstream 39559 24232472 ~ 24232809 (+)
G1270669 psme2 other upstream 735993 23445838 ~ 23451494 (+)
G1270652 NA other upstream 778464 23406660 ~ 23408002 (+)
G1270643 NA other upstream 808906 23377308 ~ 23377560 (+)
LOC110489812 rdh12 other upstream 1049745 23132828 ~ 23146739 (+)
G1271852 LOC106584099 other downstream 53510 24246423 ~ 24250283 (+)
G1272220 LOC106590226 other downstream 195499 24388412 ~ 24403661 (+)
G1272573 NA other downstream 548990 24741879 ~ 24787896 (+)
LOC110489866 tmem241 other downstream 678939 24869606 ~ 24876724 (+)

Expression


Co-expression Network