prtfdc1a (LOC106590221)


Basic Information

Item Value
gene id prtfdc1a
gene name LOC106590221
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 24604502 ~ 24618190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562797.2
cTTAGCTAGTAACGTTTAATTATTGGAGTAAAGCCAGAGCTGATGAAAGTAAACCAATCAGCCACGTTCAACTTAAGCTTCTcgtcagcaacaacaaaaagGTCAAAGAAATTAGGCTGGCCTTTTGCTCCACCCATTCCATTGGCGGCCACAATAAGAACTGGGGGGAGCTGCACCATCAGTACCAGGGACTCTGTTGTCATGGACACCACCCCCAAGAAGTACTGCAAGGAGCGTCTGGAGATGAagcagctggagagagacattGACCTCATCAAGCGATACAAGACCATCTACATCCCCAACAACAACTAACACCTCTTAAGTCTCAATGGCAAATGCCAGAATTGTAAACAGATATTCAGTGAGGAAAAAAAACATATGCCCTGAGTGCTAGATATGAAATTGTCTGGCAAATTGTCAtatccctctcactgtctctgtctatgaTTTCACATTGTTTTGGTAAACTAAATTAACTCTGCactatatttaaatatatttttgaaaatCTGCTTACAACAGTTTAGACATATTACTACATACTACGTCATGATGTAATCCTTGTAGGTCATTGTACAAGAGCCTTGAATGAGCCTATACTTATCTGGTCCTTTGCCACAGTTTCTTGAACCAAATTATTAACTTTTCCTTTTAAGCAAGCATCCGAGCCTACAGGAAAACTACTACATGAAATCCCATGCAGCTGATTATCCACCCCCGTGGATCTAATTGTGCCATTCGGTGGTTTATTCAGAAGGACTGGAAAACAACAACCACCTCTTTTTAGTTACACTAATGACTTTAGCATGAGCATGCTTGCCTTGTTGGCTAGTTTTGAGTTTCAGCCTAAAATTGCACAAATAATCTCTCTTTATAAAGTGGAAAAGTTGTCATAATACAGGGCGTGTTTACTTTGAGGAACACTCACTTTTCACCGTTATCTTGCTTGTGATTGTAGTAATTTGTTCGCTCCCCTAGTCCTTGTCTGCTGACTGATTTTTTTACTTCAACTGTCTGTCATCGCGGAAAAACATCATGGCAGAATGCGTTCCATCCAGAGCCACGGGAATGGAAGGAGGAATTGTGATTAAAGATGATTGGCCCGGATACAGTTTAGAGCTCTTCACTTATCCAGAGCATTACCGCGAAGATATAGAGAGTGTCTACATTCCACATGGGGTTATCATGGACAGGACAGAGCGCCTGGCCCGACACATCATGGATGACATTGGGGATCATGACATGGTGGTGCTGTGTGTACTGAAGGGAGGGTACAAGTTCTGTTCCGACCTGGTGGAGTTCATTAAGGTACAATGCCGCAACTCCAACAAGCACCTGGAGACCAGAGTGGAGTTTATTAGGCTTAAGAGCTACCTGaATGACCAATCAACAGAGGACCTGCAAATAATAGGAAGTCAAGATCTATCTGTTCTACGAGGCAAGAATGTCTTGATTGTAGAGGCTATAGTCGACACAGGAAAGACAATGAAGGCGCTTCTGAAGCATGTGGAGGCCTTTGAACCCAAGATGGTAAAGGTCGCCGGTCTGCTGGTGAAAAGGGTCTCTAATGTGGTTGGAAGCCTTCCAGACTATGTGGGGTTTGAAATTCCCAACCGTTTTGTCGTGGGCTATGCTTTGGACTACAACGAGTATTTCCGTGACCTGAATcaTATCTGTGTCATAAGTGAGATTGGAAAGGTGAAGTACAAGATTTGAAGAGAAGTCAACACATACATGGGTTGTTCAGAGTTGCAGTTTTCAACTTGTGGCTGCAAGTGCCTTGCCTTCTCATATCTTCTTTCGTGCTCTGTTGAGGATTATCGTTAGTTTATTAATTTCATAAAAAGAAACACACCTTGCATGTGctttatgcaacaaaaaaaaaacgagaTCTGTGTTATTCATGTTACATACAACCTTGATTGCCACATTTTAAGACAGACACACTGAatgtttttttaattgtttttttaacATATGCTATTGTTTTTGTAAACATCATATTACATTGTTGAGTGAATAGGCTTTTACATAATATGCATTTATATGTATTTGTGAAATACTCATTTTGTCCCCAATGATCTAATATGTGCCAAGCACAAAGAAATAAACTATGCCATTTTGAATAACAAA
>XM_021562799.2
cTTAGCTAGTAACGTTTAATTATTGGAGTAAAGCCAGAGCTGATGAAAGTAAACCAATCAGCCACGTTCAACTTAAGCTTCTcgtcagcaacaacaaaaagGTCAAAGAAATTAGGCTGGCCTTTTGCTCCACCCATTCCATTGGCGGCCACAATAAGAACTGGGGGGAGCTGCACCATCAGTACCAGGGACTCTGTTGTCATGGACACCACCCCCAAGAAGTACTGCAAGGAGCGTCTGGAGATGAagcagctggagagagacattGACCTCATCAAGCGATACAAGACCATCTACATCCCCAACAACAACTAACACCTCTTAAGTCTCAATGGCAAATGCCAGAATTGTAAACAGATATTCAGTGAGGAAAAAAAACATATGCCCTGAGTGCTAGATATGAAATTGTCTGGCAAATTGTCAtatccctctcactgtctctgtctatgaTTTCACATTGTTTTGGTAAACTAAATTAACTCTGCactatatttaaatatatttttgaaaatCTGCTTACAACAGTTTAGACATATTACTACATACTACGTCATGATGTAATCCTTGTAGGTCATTGTACAAGAGCCTTGAATGAGCCTATACTTATCTGGTCCTTTGCCACAGTTTCTTGAACCAAATTATTAACTTTTCCTTTTAAGCAAGCATCCGAGCCTACAGGAAAACTACTACATGAAATCCCATGCAGCTGATTATCCACCCCCGTGGATCTAATTGTGCCATTCGGTGGTTTATTCAGAAGGACTGGAAAACAACAACCACCTCTTTTTAGTTACACTAATGACTTTAGCATGAGCATGCTTGCCTTGTTGGCTAGTTTTGAGTTTCAGCCTAAAATTGCACAAATAATCTCTCTTTATAAAGTGGAAAAGTTGTCATAATACAGGGCGTGTTTACTTTGAGGAACACTCACTTTTCACCGTTATCTTGCTTGTGATTGTAGTAATTTGTTCGCTCCCCTAGTCCTTGTCTGCTGACTGATTTTTTTACTTCAACTGTCTGTCATCGCGGAAAAACATCATGGCAGAATGCGTTCCATCCAGAGCCACGGGAATGGAAGGAGGAATTGTGATTAAAGATGATTGGCCCGGATACAGTTTAGAGCTCTTCACTTATCCAGAGCATTACCGCGAAGATATAGAGAGTGTCTACATTCCACATGGGGTTATCATGGACAGGACAGAGCGCCTGGCCCGACACATCATGGATGACATTGGGGATCATGACATGGTGGTGCTGTGTGTACTGAAGGGAGGGTACAAGTTCTGTTCCGACCTGGTGGAGTTCATTAAGGTACAATGCCGCAACTCCAACAAGCACCTGGAGACCAGAGTGGAGTTTATTAGGCTTAAGAGCTACCTGaATGACCAATCAACAGAGGACCTGCAAATAATAGGAAGTCAAGATCTATCTGTTCTACGAGGCAAGGCTATAGTCGACACAGGAAAGACAATGAAGGCGCTTCTGAAGCATGTGGAGGCCTTTGAACCCAAGATGGTAAAGGTCGCCGGTCTGCTGGTGAAAAGGGTCTCTAATGTGGTTGGAAGCCTTCCAGACTATGTGGGGTTTGAAATTCCCAACCGTTTTGTCGTGGGCTATGCTTTGGACTACAACGAGTATTTCCGTGACCTGAATcaTATCTGTGTCATAAGTGAGATTGGAAAGGTGAAGTACAAGATTTGAAGAGAAGTCAACACATACATGGGTTGTTCAGAGTTGCAGTTTTCAACTTGTGGCTGCAAGTGCCTTGCCTTCTCATATCTTCTTTCGTGCTCTGTTGAGGATTATCGTTAGTTTATTAATTTCATAAAAAGAAACACACCTTGCATGTGctttatgcaacaaaaaaaaaacgagaTCTGTGTTATTCATGTTACATACAACCTTGATTGCCACATTTTAAGACAGACACACTGAatgtttttttaattgtttttttaacATATGCTATTGTTTTTGTAAACATCATATTACATTGTTGAGTGAATAGGCTTTTACATAATATGCATTTATATGTATTTGTGAAATACTCATTTTGTCCCCAATGATCTAATATGTGCCAAGCACAAAGAAATAAACTATGCCATTTTGAATAACAAA
>XM_036944119.1
cTTAGCTAGTAACGTTTAATTATTGGAGTAAAGCCAGAGCTGATGAAAGTAAACCAATCAGCCACGTTCAACTTAAGCTTCTcgtcagcaacaacaaaaagGTCAAAGAAATTAGGCTGGCCTTTTGCTCCACCCATTCCATTGGCGGCCACAATAAGAACTGGGGGGAGCTGCACCATCAGTACCAGGGACTCTGTTGTCATGGACACCACCCCCAAGAAGTACTGCAAGGAGCGTCTGGAGATGAagcagctggagagagacattGACCTCATCAAGCGATACAAGACCATCTACATCCCCAACAACAACTAACACCTCTTAAGTCTCAATGGCAAATGCCAGAATTTCCTTGTCTGCTGACTGATTTTTTTACTTCAACTGTCTGTCATCGCGGAAAAACATCATGGCAGAATGCGTTCCATCCAGAGCCACGGGAATGGAAGGAGGAATTGTGATTAAAGATGATTGGCCCGGATACAGTTTAGAGCTCTTCACTTATCCAGAGCATTACCGCGAAGATATAGAGAGTGTCTACATTCCACATGGGGTTATCATGGACAGGACAGAGCGCCTGGCCCGACACATCATGGATGACATTGGGGATCATGACATGGTGGTGCTGTGTGTACTGAAGGGAGGGTACAAGTTCTGTTCCGACCTGGTGGAGTTCATTAAGGTACAATGCCGCAACTCCAACAAGCACCTGGAGACCAGAGTGGAGTTTATTAGGCTTAAGAGCTACCTGaATGACCAATCAACAGAGGACCTGCAAATAATAGGAAGTCAAGATCTATCTGTTCTACGAGGCAAGAATGTCTTGATTGTAGAGGCTATAGTCGACACAGGAAAGACAATGAAGGCGCTTCTGAAGCATGTGGAGGCCTTTGAACCCAAGATGGTAAAGGTCGCCGGTCTGCTGGTGAAAAGGGTCTCTAATGTGGTTGGAAGCCTTCCAGACTATGTGGGGTTTGAAATTCCCAACCGTTTTGTCGTGGGCTATGCTTTGGACTACAACGAGTATTTCCGTGACCTGAATcaTATCTGTGTCATAAGTGAGATTGGAAAGGTGAAGTACAAGATTTGAAGAGAAGTCAACACATACATGGGTTGTTCAGAGTTGCAGTTTTCAACTTGTGGCTGCAAGTGCCTTGCCTTCTCATATCTTCTTTCGTGCTCTGTTGAGGATTATCGTTAGTTTATTAATTTCATAAAAAGAAACACACCTTGCATGTGctttatgcaacaaaaaaaaaacgagaTCTGTGTTATTCATGTTACATACAACCTTGATTGCCACATTTTAAGACAGACACACTGAatgtttttttaattgtttttttaacATATGCTATTGTTTTTGTAAACATCATATTACATTGTTGAGTGAATAGGCTTTTACATAATATGCATTTATATGTATTTGTGAAATACTCATTTTGTCCCCAATGATCTAATATGTGCCAAGCACAAAGAAATAAACTATGCCATTTTGAATAACAAA
>XM_021562798.2
CTATATGGAATACATATTGGTTTTTGAGCGAAAAATATTGTGGGTGCCACAGTAAGATTATTGTAGGGAATACTCAGTGGGGTCTGTAGAATGTATTATGGTGTCATTCAATTGCGCTCTGAATAATACGGAGTGTTGCTGGCCTTTTACCATTATTCATTGGCCACAACTCGAATCACTGTATATGGCATAGTTTTCGCATTGTCACACATTGGACGAGAAAAGTAAAGGGACAAACTGTATTTCCTAAGTACGGTGTTACATGTAAACAGGGAGAAGGAAAAACAGATAAAACGCAGATTGCATTCAAATCTTAGATGGAGGATTTTACCTCTCACTTTATCAGGAAACGTAGAAACAAGATGAATATTCTTCCCACACTGTGAACTACTAATAGCTAACAAATTAActgtataacgttagctagctatgtaaACTTATTTGCATTGCACAAAGCCCATGggcatatctactgtatctaacgttagctagcttaatATTTTTCTTAAACCTATGTTTCCGTGTGGGGGATTGGGAATGTGTGGGGATACTTTGTTGTCACAACCTGGACAGTGAAAAAGACTGCACCACTGTGCACTGGGCGTCTGACAGATTTTTGCACTCATGTCCTGAAATGATCTAGCTACTGTACTATATCTTCTCTTTTATTATTCCATTGTCAAGTTATATCAATGTTTAGGGCACAAGTTAAGCATGCGAAAAGTATGAATAAGGTTCCAAACAAGACAGGCGCCAACAAAAGTAGAAGTGGCCTCCAGAGAAATAACTGCTCGAGCACTCCAAGGAACCCAAATTTACCGAAAGTAAGCAATAGGGCGAGATTACATCTCAATATCACTTGAGGTCATTTCCTAAATCTAATTCGGTGTTTATATTTTTACACCACTAGAGAAACTTTTTCACATTTGTATGATACTTTCAAGAAAACACAAATAGCAGCCAAAGCAGACAATCAAATTATGGGTATTCACTCCAAAAAGGACTTTGTAAAGACATAtgccttttttatttttattaaacctttatttaactagacaagtcagttaagaacaaattcatattttacaatgacggcctactctggatgacgctgggctaattgtgcgccacacacacagacaatcacaaggacaggtgaaacagatcagggtgtgacatcatGAGACAGGGCGCCATTATACAGCTCTCTGAGGAAGAACTGGGGGGAGCTGCACCATCAGTACCAGGGACTCTGTTGTCATGGACACCACCCCCAAGAAGTACTGCAAGGAGCGTCTGGAGATGAagcagctggagagagacattGACCTCATCAAGCGATACAAGACCATCTACATCCCCAACAACAACTAACACCTCTTAAGTCTCAATGGCAAATGCCAGAATTGTAAACAGATATTCAGTGAGGAAAAAAAACATATGCCCTGAGTGCTAGATATGAAATTGTCTGGCAAATTGTCAtatccctctcactgtctctgtctatgaTTTCACATTGTTTTGGTAAACTAAATTAACTCTGCactatatttaaatatatttttgaaaatCTGCTTACAACAGTTTAGACATATTACTACATACTACGTCATGATGTAATCCTTGTAGGTCATTGTACAAGAGCCTTGAATGAGCCTATACTTATCTGGTCCTTTGCCACAGTTTCTTGAACCAAATTATTAACTTTTCCTTTTAAGCAAGCATCCGAGCCTACAGGAAAACTACTACATGAAATCCCATGCAGCTGATTATCCACCCCCGTGGATCTAATTGTGCCATTCGGTGGTTTATTCAGAAGGACTGGAAAACAACAACCACCTCTTTTTAGTTACACTAATGACTTTAGCATGAGCATGCTTGCCTTGTTGGCTAGTTTTGAGTTTCAGCCTAAAATTGCACAAATAATCTCTCTTTATAAAGTGGAAAAGTTGTCATAATACAGGGCGTGTTTACTTTGAGGAACACTCACTTTTCACCGTTATCTTGCTTGTGATTGTAGTAATTTGTTCGCTCCCCTAGTCCTTGTCTGCTGACTGATTTTTTTACTTCAACTGTCTGTCATCGCGGAAAAACATCATGGCAGAATGCGTTCCATCCAGAGCCACGGGAATGGAAGGAGGAATTGTGATTAAAGATGATTGGCCCGGATACAGTTTAGAGCTCTTCACTTATCCAGAGCATTACCGCGAAGATATAGAGAGTGTCTACATTCCACATGGGGTTATCATGGACAGGACAGAGCGCCTGGCCCGACACATCATGGATGACATTGGGGATCATGACATGGTGGTGCTGTGTGTACTGAAGGGAGGGTACAAGTTCTGTTCCGACCTGGTGGAGTTCATTAAGGTACAATGCCGCAACTCCAACAAGCACCTGGAGACCAGAGTGGAGTTTATTAGGCTTAAGAGCTACCTGaATGACCAATCAACAGAGGACCTGCAAATAATAGGAAGTCAAGATCTATCTGTTCTACGAGGCAAGAATGTCTTGATTGTAGAGGCTATAGTCGACACAGGAAAGACAATGAAGGCGCTTCTGAAGCATGTGGAGGCCTTTGAACCCAAGATGGTAAAGGTCGCCGGTCTGCTGGTGAAAAGGGTCTCTAATGTGGTTGGAAGCCTTCCAGACTATGTGGGGTTTGAAATTCCCAACCGTTTTGTCGTGGGCTATGCTTTGGACTACAACGAGTATTTCCGTGACCTGAATcaTATCTGTGTCATAAGTGAGATTGGAAAGGTGAAGTACAAGATTTGAAGAGAAGTCAACACATACATGGGTTGTTCAGAGTTGCAGTTTTCAACTTGTGGCTGCAAGTGCCTTGCCTTCTCATATCTTCTTTCGTGCTCTGTTGAGGATTATCGTTAGTTTATTAATTTCATAAAAAGAAACACACCTTGCATGTGctttatgcaacaaaaaaaaaacgagaTCTGTGTTATTCATGTTACATACAACCTTGATTGCCACATTTTAAGACAGACACACTGAatgtttttttaattgtttttttaacATATGCTATTGTTTTTGTAAACATCATATTACATTGTTGAGTGAATAGGCTTTTACATAATATGCATTTATATGTATTTGTGAAATACTCATTTTGTCCCCAATGATCTAATATGTGCCAAGCACAAAGAAATAAACTATGCCATTTTGAATAACAAA

Function

NR:

description
hypoxanthine-guanine phosphoribosyltransferase-like isoform X1

GO: NA

KEGG:

id description
K24196 PRTFDC1; phosphoribosyltransferase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562797.2 False 2136 mRNA 0.41 11 24604502 24618190
XM_021562799.2 False 2118 mRNA 0.41 10 24604502 24618190
XM_036944119.1 False 1504 mRNA 0.42 12 24604502 24618190
XM_021562798.2 True 3195 mRNA 0.40 10 24604851 24618190

Neighbor

gene id symbol gene type direction distance location
nle1 nle1 coding upstream 374792 24213666 ~ 24229710 (+)
si:ch211-37e10.2 LOC106590232 coding upstream 411589 24186466 ~ 24192913 (+)
sulf1 sulf1 coding upstream 576701 23950432 ~ 24027801 (+)
LOC118938911 NA coding upstream 700110 23857413 ~ 23904392 (+)
LOC110489839 LOC106590236 coding upstream 768064 23666471 ~ 23836438 (+)
LOC110489855 arhgap21 coding downstream 7279 24625469 ~ 24731493 (+)
chchd7 chch7 coding downstream 141662 24759852 ~ 24762965 (+)
LOC110489862 fam110b coding downstream 208418 24826608 ~ 24829935 (+)
LOC110489863 sdcbp coding downstream 218417 24836607 ~ 24840963 (+)
LOC110489866 tmem241 coding downstream 251416 24869606 ~ 24876724 (+)
G1272502 NA non-coding upstream 13320 24590898 ~ 24591182 (+)
G1272317 NA non-coding upstream 56531 24547742 ~ 24547971 (+)
G1272304 gpr158 non-coding upstream 79743 24524460 ~ 24524759 (+)
G1272296 NA non-coding upstream 90963 24513151 ~ 24513539 (+)
G1272295 NA non-coding upstream 93100 24511138 ~ 24511402 (+)
G1272573 NA non-coding downstream 123689 24741879 ~ 24787896 (+)
G1272642 NA non-coding downstream 217478 24835668 ~ 24836170 (+)
G1272656 NA non-coding downstream 248071 24866261 ~ 24866567 (+)
G1272686 NA non-coding downstream 282528 24900718 ~ 24901029 (+)
G1272220 LOC106590226 other upstream 200841 24388412 ~ 24403661 (+)
G1271852 LOC106584099 other upstream 354219 24246423 ~ 24250283 (+)
G1270669 psme2 other upstream 1154029 23445838 ~ 23451494 (+)
G1270652 NA other upstream 1196500 23406660 ~ 23408002 (+)
G1272672 LOC106590208 other downstream 341742 24959932 ~ 25027501 (+)
rbis cssa29h8orf59 other downstream 350219 24968304 ~ 24976522 (+)

Expression


Co-expression Network