chchd7 (chch7)


Basic Information

Item Value
gene id chchd7
gene name chch7
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 24759852 ~ 24762965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562206.2
TTTGCTGTCAGTTTGCTGCAGACGTCATGAACATCGTAGTGCGATGTTATTAAATGACGTTCGAACTGACATGAGGGAATAGATGCACAAGTATTCAACCAATATTTCCACATAACATCAAGAAAAGTAAGTGCGGAACGCGGTGGGCAGTCATGTAGATTTGACCAAAGTCGAAGCGCAGTGATTTGCGAAAGGTTCGCTGACGCGTGAAAATATAATTATCAAACAATTCGACttcctggctggctagctagctatgctagcTGCGGCACTATCATACATCTTTGGGGAGAGTCATGCACAACGTTTGAGCGACGCAGCAAGAAATGGACAAAAACGTGCGCAAGCTTCGAAGTAAAGATATAAACCCATGCATTGAAGAAAGTGATGGCTCTCAGAAATGTTTGGATGCCAATAACTATGATAAGAGCATGTGTTCTGCATATTTTCTGAGATACAAAAACTGCAGAAAATACTGGCACAACCTCATGGTGAATAGGAGACGAGACGGCGTGAAGCCTGACATGCCCACTGCTGAGGAGCGCCAGGAGATACTAGCTGCCATTGGAGGCAAGCCCTATTGAGGCAGTGGCAAGACCAGTAGAAGGAAACACTGGAGTGGGGTGTAGACCATACTTTCCAGTAAAGCTCTGGGACAGACACCTTCTTTATGAAGGTCTGAGAGCTCCTCCACACACCTCGCCATTATGATGCTGACCGTGCCCCAAGAGGTGCCTCTGCCGCACTGTGTGCTGCTTGCCACTAAAGGTTGATGGTGGCGTTGAAACCTGTCAAATACCGATATCAATGATCAAATCACTACAGTATGCCTAATGCTGAAATCTGGCAATGAATGTGCATAGCTGGTTAGTATGAGTGGAGCTATATGGAAAAGCACTTCAAGTTGCCTTGATGAATCAAGTGTTTTAATAATCTTTAAAGAAAGAACTGGAAAGACTATGGACTTACTCACCTTTATTTGCAAGCCTTGCCAGCATCTCTGAAAATAAACTGAATCTGTGTTTGTAAAATTATT
>NM_001160690.1
AGTGCGATGTTATTAAATGACGTTCGAACTGACATGAGGGAATAGATGCACAAGTATTCAACCAATATTTCCACATAACATCAAGAAAACGACGCAGCAAGAAATGGACAAAAACGTGCGCAAGCTTCGAAGTAAAGATATAAACCCATGCATTGAAGAAAGTGATGGCTCTCAGAAATGTTTGGATGCCAATAACTATGATAAGAGCATGTGTTCTGCATATTTTCTGAGATACAAAAACTGCAGAAAATACTGGCACAACCTCATGGTGAATAGGAGACGAGACGGCGTGAAGCCTGACATGCCCACTGCTGAGGAGCGCCAGGAGATACTAGCTGCCATTGGAGGCAAGCCCTATTGAGGCAGTGGCAAGACCAGTAGAAGGAAACACTGGAGTGGGGTGTAGACCATACTTTCCAGTAAAGCTCTGGGACAGACACCTTCTTTATGAAGGTCTGAGAGCTCCTCCACACACCTCGCCATTATGATGCTGACCGTGCCCCAAGAGGTGCCTCTGCCGCACTGTGTGCTGCTTGCCACTAAAGGTTGATGGTGGCGTTGAAACCTGTCAAATACCGATATCAATGATCAAATCACTACAGTATGCCTAATGCTGAAATCTGGCAATGAATGTGCATAGCTGGTTAGTATGAGTGGAGCTATATGGAAAAGCACTTCAAGTTGCCTTGATGAATCAAGTGTTTTAATAATCTTTAAAGAAAGAACTGGAAAGACTATGGACTTACTCACCTTTATTTGCAAGCCTTGCCAGCATCTCTGAAAATAAACTGAATCTGTGTTTGT
>XM_021562207.2
AGAAAGCGTCGTTAGCCCTCTTGCGTGCTTAATTTTTTTATTAGTTAGCTGCTATAGTTGCAGTAGCTAGCTCACTCATTCGAAGGTCAATGACAAAGatgatctattatattgacaagatagtcgaGTGACGGCACTAACAATGGAAATATGTCCACGAAGATGGAAGGtaggcgagatcaggtgggaccattccaGCCAATTAGAGGGCAGATATGCTTGTGAACAGGCACAACTCcaatttaaagtatttttttttgccaaaatGCCACGTGCGTCCACTGTCAGTGCATTCGTAACAACAACCATTACATAACTTATATCACATCAAATAAGCCTCAAGTAGGAAATTAGCgattcattttttttgttaaacAAATTCGTCACCGACTCccatacaacaaaaaaaaatacttcGTGATCTTATTTCGTGGACAGATTTTGAGCGCCGTAAACGCTCTCGCTTCGCCTTCTCTGACTTTCATCCATGAGCTGTAGCAATAACGTTATAAGGTGCAGCTATGAGCTTGCTGTTCCTGCAATTATGCGACGCAGCAAGAAATGGACAAAAACGTGCGCAAGCTTCGAAGTAAAGATATAAACCCATGCATTGAAGAAAGTGATGGCTCTCAGAAATGTTTGGATGCCAATAACTATGATAAGAGCATGTGTTCTGCATATTTTCTGAGATACAAAAACTGCAGAAAATACTGGCACAACCTCATGGTGAATAGGAGACGAGACGGCGTGAAGCCTGACATGCCCACTGCTGAGGAGCGCCAGGAGATACTAGCTGCCATTGGAGGCAAGCCCTATTGAGGCAGTGGCAAGACCAGTAGAAGGAAACACTGGAGTGGGGTGTAGACCATACTTTCCAGTAAAGCTCTGGGACAGACACCTTCTTTATGAAGGTCTGAGAGCTCCTCCACACACCTCGCCATTATGATGCTGACCGTGCCCCAAGAGGTGCCTCTGCCGCACTGTGTGCTGCTTGCCACTAAAGGTTGATGGTGGCGTTGAAACCTGTCAAATACCGATATCAATGATCAAATCACTACAGTATGCCTAATGCTGAAATCTGGCAATGAATGTGCATAGCTGGTTAGTATGAGTGGAGCTATATGGAAAAGCACTTCAAGTTGCCTTGATGAATCAAGTGTTTTAATAATCTTTAAAGAAAGAACTGGAAAGACTATGGACTTACTCACCTTTATTTGCAAGCCTTGCCAGCATCTCTGAAAATAAACTGAATCTGTGTTTGTAAAATTATT
>TU1453691
TGAACATCGTAGTGCGATGTTATTAAATGACGTTCGAACTGACATGAGGGAATAGATGCACAAGTATTCAACCAATATTTCCACATAACATCAAGAAAACGACGCAGCAAGAAATGGACAAAAACGTGCGCAAGCTTCGAAGTAAAGATATAAACCCATGCATTGAAGAAAGTGATGGCTCTCAGAAATGTTTGGATGCCAATAACTATGATAAGAGCATGTGTTCTGCATATTTTCTGAGATACAAAAACTGCAGAAAATACTGGCACAACCTCATGGTGAATAGGAGACGAGACGGCGTGAAGCCTGACATGCCCACTGCTGAGGAGCGCCAGGAGATACTAGCTGCCATTGGAGGCAAGCCCTATTGAGGCAGTGGCAAGACCAGTAGAAGGAAACACTGGAGTGGGGTGTAGACCATACTTTCCAGTAAAGCTCTGGGACAGACACCTTCTTTATGAAGGTCTGAGAGCTCCTCCACACACCTCGCCATTATGATGCTGACCGTGCCCCAAGAGGTGCCTCTGCCGCACTGTGTGCTGCTTGCCACTAAAGGTTGATGGTGGCGTTGAAACCTGTCAAATACCGATATCAATGATCAAATCACTACAGTATGCCTAATGCTGAAATCTGGCAATGAATGTGCATAGCTGGTTAGTATGAGTGGAGCTATATGGAAAAGCACTTCAAGTTGCCTTGATGAATCAAGTGTTTTAATAATCTTTAAAGAAAGAACTGGAAAGACTATGGACTTACTCACCTTTATTTGCAAGCCTTGCCAGCATCTCTGAAAATAAACTGAATCTGTGTTTGTAAAATTATTTA
>TU1453692
TGAACATCGTAGTGCGATGTTATTAAATGACGTTCGAACTGACATGAGGGAATAGATGCACAAGTATTCAACCAATATTTCCACATAACATCAAGAAAACGACGCAGCAAGAAATGGACAAAAACGTGCGCAAGCTTCGAAGTAAAGATATAAACCCATGCATTGAAGAAAGTGATGGCTCTCAGAAATGTTTGGATGCCAATAACTATGATAAGAGCATGTGTTCTGCATATTTTCTGAGATACAAAAACTGCAGAAAATACTGGCACAACCTCATGGTGAATAGGAGACGAGACGGCGTGAAGCCTGACATGCCCACTGCTGAGGAGCGCCAGGAGATACTAGCTGCCATTGGAGGCAAGCCCTATTGAGGCAGTGGCAAGACCAGTAGAAGGAAACACTGGAGTGGGGTGTAGACCATACTTTCCAGTAAAGCTCTGGGACAGACACCTTCTTTATGAAGGTCTGAGAGCTCCTCCACACACCTCGCCATTATGATGCTGACCGTGCCCCAAGAGGTGCCTCTGCCGCACTGTGTGCTGCTTGCCACTAAAGGTTGATGGTGGCGTTGAAACCTGTCAAATACCGATATCAATGATCAAATCACTACAGTATGCCTAATGCTGAAATCTGGCAATGAATGTGCATAGCTGGTTAGTATGAGTGGAGCTATATGGAAAAGCACTTCAAGTTGCCTTGATGAATCAAGTGTTTTAATAATCTTTAAAGAAAGAACTGGAAAGACTATGGACTTACTCACCTTTATTTGCAAGCCTTGCCAGC

Function

NR:

description
coiled-coil-helix-coiled-coil-helix domain-containing protein 7 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562206.2 False 1036 mRNA 0.44 4 24759852 24762963
NM_001160690.1 False 804 mRNA 0.44 4 24759889 24762954
XM_021562207.2 False 1271 mRNA 0.43 4 24760209 24762963
TU1453691 False 825 TUCP 0.43 4 24759879 24762965
TU1453692 True 783 TUCP 0.44 4 24759879 24762923

Neighbor

gene id symbol gene type direction distance location
LOC110489855 arhgap21 coding upstream 28359 24625469 ~ 24731493 (+)
prtfdc1a LOC106590221 coding upstream 141662 24604502 ~ 24618190 (+)
nle1 nle1 coding upstream 530142 24213666 ~ 24229710 (+)
si:ch211-37e10.2 LOC106590232 coding upstream 566939 24186466 ~ 24192913 (+)
sulf1 sulf1 coding upstream 732051 23950432 ~ 24027801 (+)
LOC110489862 fam110b coding downstream 63645 24826608 ~ 24829935 (+)
LOC110489863 sdcbp coding downstream 73644 24836607 ~ 24840963 (+)
LOC110489866 tmem241 coding downstream 106643 24869606 ~ 24876724 (+)
rbis cssa29h8orf59 coding downstream 205341 24968304 ~ 24976522 (+)
zgc:111976 LOC106590202 coding downstream 889775 25652738 ~ 25662668 (+)
G1272502 NA non-coding upstream 168670 24590898 ~ 24591182 (+)
G1272317 NA non-coding upstream 211881 24547742 ~ 24547971 (+)
G1272304 gpr158 non-coding upstream 235093 24524460 ~ 24524759 (+)
G1272296 NA non-coding upstream 246313 24513151 ~ 24513539 (+)
G1272295 NA non-coding upstream 248450 24511138 ~ 24511402 (+)
G1272642 NA non-coding downstream 72705 24835668 ~ 24836170 (+)
G1272656 NA non-coding downstream 103298 24866261 ~ 24866567 (+)
G1272686 NA non-coding downstream 137755 24900718 ~ 24901029 (+)
G1272688 NA non-coding downstream 139745 24902708 ~ 24902992 (+)
G1272573 NA other upstream 16047 24741879 ~ 24787896 (+)
G1272220 LOC106590226 other upstream 356191 24388412 ~ 24403661 (+)
G1271852 LOC106584099 other upstream 509569 24246423 ~ 24250283 (+)
LOC110489839 LOC106590236 other upstream 1064671 23666471 ~ 23836438 (+)
G1270669 psme2 other upstream 1309379 23445838 ~ 23451494 (+)
G1272672 LOC106590208 other downstream 196969 24959932 ~ 25027501 (+)
G1274765 NA other downstream 1601315 26364278 ~ 26365146 (+)
G1274830 NA other downstream 1677048 26440011 ~ 26442387 (+)

Expression


Co-expression Network