Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489868 |
| gene name | ralyl |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 25000488 ~ 25157248 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ralyl | Predicted to enable RNA binding activity. Is expressed in brain. Orthologous to human RALYL (RALY RNA binding protein like). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036944133.1 | False | 3776 | mRNA | 0.42 | 9 | 25000488 | 25156999 |
| XM_021562821.2 | False | 4026 | mRNA | 0.42 | 9 | 25000488 | 25157246 |
| XM_021562820.2 | False | 4735 | mRNA | 0.41 | 9 | 25000488 | 25157248 |
| TU1454193 | True | 984 | lncRNA | 0.39 | 1 | 25155956 | 25156939 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC100135826 | LOC100135826 | coding | downstream | 34203 | 24959932 ~ 24966285 (-) |
| rbbp8 | LOC106590210 | coding | downstream | 108159 | 24875929 ~ 24892329 (-) |
| nsmaf | nsmaf | coding | downstream | 142146 | 24841045 ~ 24858342 (-) |
| penkb | penk | coding | downstream | 217194 | 24779955 ~ 24783294 (-) |
| sdr16c5b | sdr16c5 | coding | downstream | 224835 | 24764976 ~ 24775653 (-) |
| cdk13 | LOC106590203 | coding | upstream | 453144 | 25610392 ~ 25619873 (-) |
| ralaa | LOC106590204 | coding | upstream | 463994 | 25620868 ~ 25646515 (-) |
| LOC110489876 | LOC106590200 | coding | upstream | 560524 | 25717772 ~ 25736878 (-) |
| LOC110489879 | LOC106590199 | coding | upstream | 589441 | 25746689 ~ 25769036 (-) |
| LOC110489878 | LOC106590198 | coding | upstream | 613676 | 25770924 ~ 25774941 (-) |
| G1273026 | NA | non-coding | downstream | 25708 | 24968267 ~ 24974780 (-) |
| G1273043 | NA | non-coding | downstream | 85381 | 24914436 ~ 24915107 (-) |
| G1273038 | NA | non-coding | downstream | 93278 | 24906997 ~ 24907210 (-) |
| G1273015 | NA | non-coding | downstream | 131341 | 24868920 ~ 24869147 (-) |
| G1273013 | NA | non-coding | downstream | 132789 | 24867470 ~ 24867699 (-) |
| G1273238 | NA | non-coding | upstream | 22979 | 25180227 ~ 25180513 (-) |
| G1273278 | NA | non-coding | upstream | 48958 | 25206206 ~ 25206406 (-) |
| G1273280 | NA | non-coding | upstream | 50193 | 25207441 ~ 25207811 (-) |
| G1273285 | NA | non-coding | upstream | 52528 | 25209776 ~ 25209983 (-) |
| G1273290 | NA | non-coding | upstream | 55450 | 25212698 ~ 25212913 (-) |
| G1271421 | NA | other | downstream | 1271549 | 23713355 ~ 23728939 (-) |
| G1269265 | NA | other | downstream | 3197136 | 21802687 ~ 21803352 (-) |
| G1268555 | LOC106590243 | other | downstream | 4040399 | 20958372 ~ 20960089 (-) |
| G1267452 | NA | other | downstream | 4709815 | 20290350 ~ 20290673 (-) |
| G1267414 | NA | other | downstream | 4732000 | 20267966 ~ 20268488 (-) |
| G1274532 | LOC106590196 | other | upstream | 889000 | 26046058 ~ 26048599 (-) |
| G1275015 | NA | other | upstream | 1354277 | 26511525 ~ 26512075 (-) |
| G1275016 | LOC106590191 | other | upstream | 1397720 | 26554968 ~ 26562033 (-) |
| LOC110489888 | gli3 | other | upstream | 1413030 | 26566351 ~ 26694581 (-) |
| LOC110489892 | NA | other | upstream | 1576965 | 26733490 ~ 26743932 (-) |
| G1273195 | NA | non-coding | downstream | 9181 | 25146528 ~ 25146775 (-) |
| G1273174 | NA | non-coding | downstream | 41387 | 25114285 ~ 25114569 (-) |
| G1273168 | NA | non-coding | downstream | 49079 | 25106675 ~ 25106877 (-) |
| G1273167 | NA | non-coding | downstream | 49454 | 25105740 ~ 25106502 (-) |
| G1273117 | NA | non-coding | downstream | 65628 | 25028387 ~ 25090328 (-) |
