LOC110489876 (LOC106590200)


Basic Information

Item Value
gene id LOC110489876
gene name LOC106590200
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 25717772 ~ 25736878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562832.2
AtagttttttgttttatttatggaCAGATGGGCACACTCCCACACTGAAACATAATCAACAAATTCAGTATTTGTgttttagtgagtctgccagatcagaggcagtagggaataTTGATAGGCGCTTGAATTGAACCATattgctgtcctgcctgagcattcgaaatgtaacgagtacttttgtgtgtcagggaaaatgtatgggagtaaaaagtacatattttctttagtaatgtagaggaggttgtgatacagcttggatttgATCCAGggcgtctgtagtgacgcctcaatcactgagatgcagtacggTGCGTCGCAGTAGAGGTATTCGCGTGGTAACGTCGTAGCATACTGTCCCTAAGGCCAACTCCGAAAATAGAACTCAGAGCACCGACGGTGTTGAAGGCAATAGGTTATACCACTGGcacaacacaaacaaaaacaaaccaccTTTGAGCGCCGATTTCACAGTCTTAACAAGGAGTAGCCATGGAGCATGAAGGATCGCACCGTTTTGCAAGGAAAAAGCGAAGGACTCGCCTCTGGCTAATCATGGGTCTCTGTGCAGTACTTTCACTTGTCGTTATCCTCGCTATTTCTCTGGGAGTAGTGCACAGTCACGCACTGTCTAGTTCCAGCCCATCGAGTGAAAGCCTAAAAAAAACGATTATTGACAAATGCGAAGCATTTATACAGAACAACAAATCTTCAAGTGCAAACAACTGTCAAAAGATATGGAGTGCATTTCAGCAAGCATTCGTGGGGAGGGACCCATGTAATGTACCGATGGAGGCCTATGACCCCCTTATCCATACTGTGATCCAGGATCCTGTCTGTAACAGGATGTTGTTTTGGAGCAAAACAAAGAAAATAGTGCATGACTTCACAGAGAAGCGAGATTGCTTCTTGACCCTCGAGGACACACTAGTCGGCTTCATCATGAATGGACTGACCTGGTGTGGCAAGGAGGAGAGCAATGAAACGTTCACCACAGGGTGCCCAGGCTGGACAGACTGTGTCAACAACACAGTTCGTTCATTCTGGAATCGGGCCTCAGCAGCATTTGCAGATGCCGCATGTGGTGATGTCACAGCCATGCTGAATGGATCTATTGCCACTCCTTTCAGCCCCACCAGTATTTTTGCCACCATCGAGGTGAAAAGGTTCAAAGCTGCCAAAGTGAAGAGCCTGAGTGTTGTCCTGGTGACCAAGGAGAATAAGGGGACAACCTGTGATGATCCCTCCTTACAGGACCTACAGAAAGAGATAGAGCCAAAACTCAAGTATAATTGCAAGGCGGTTCCTGAGTCTAAGATCCAGGACTGCATTTCCCACCCAGACACAGCTTGTGGCGCCTGCTGGTAATACTGTCCAATCAGCAGTGACCAAGGCGTGGTCGTCAAGAGTATAAATGGATATTATTCCATCATGGAACCATGAACTAATATTTGAGCTGTCATCAAGCAGCCCCAGGCCTACCCTGATCGGCATAGCTTCCATTCTTTACAGAAGTTCTTACAATTTAATCATTTCCATAGTACCTCCTTTTATCTTAAATGACAATTGCACCCTTTAGCAACCTaattttcattatctccagcacaatagaACTGATGAGATTTGTGGTGACGTGgagagaaagaaaacactctcattgcaggttttgaaaatcactgtttttcTTACTAATTAAAAAATAAAGCTGCAAGTTGGAACCAAATATGGTTCTTGAGAGCGATACCATAGGGGAACCATTTTCATGGgatggttctttgaagaaccataCAAAAATTCGGCACTCCAGGACCAGAATTTAAAAGCCCTTCTGTAGGTTTTtaagccttatttgcatatttcccagggtgcctttcacatttaaaaaaaatcccaagTGTGCCGGGTAGGCGGAGTGTTCCAATTGATCACCATTTAATGTGTCCAAAGGTACAAATCCGCCTTCCCGgcgggcccagagagcaaatGAAGTGCACTATAAGCCTAACGCTGGCCAATCGGATTTCTCATAgcaggtgtaaaaaaataaaataaatgctaCAGcgaagttgatactgtgagatttcaaaacttttaaaaccatgactagagagagactgtcatcGAATAcagcaaatacag

Function

NR:

description
ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562832.2 True 2139 mRNA 0.44 8 25717772 25736878

Neighbor

gene id symbol gene type direction distance location
ralaa LOC106590204 coding downstream 71257 25620868 ~ 25646515 (-)
cdk13 LOC106590203 coding downstream 97899 25610392 ~ 25619873 (-)
LOC110489868 ralyl coding downstream 560524 25000488 ~ 25157248 (-)
LOC100135826 LOC100135826 coding downstream 751487 24959932 ~ 24966285 (-)
rbbp8 LOC106590210 coding downstream 825443 24875929 ~ 24892329 (-)
LOC110489879 LOC106590199 coding upstream 9811 25746689 ~ 25769036 (-)
LOC110489878 LOC106590198 coding upstream 34046 25770924 ~ 25774941 (-)
LOC110489880 LOC106590197 coding upstream 49330 25786208 ~ 25801252 (-)
cdh19 LOC106590195 coding upstream 355454 26092332 ~ 26114459 (-)
trnaa-ugc-65 NA coding upstream 387863 26124741 ~ 26124814 (-)
G1273315 NA non-coding downstream 488268 25229252 ~ 25229504 (-)
G1273290 NA non-coding downstream 504859 25212698 ~ 25212913 (-)
G1273285 NA non-coding downstream 507789 25209776 ~ 25209983 (-)
G1273280 NA non-coding downstream 509961 25207441 ~ 25207811 (-)
G1274428 NA non-coding upstream 172262 25909140 ~ 25909362 (-)
G1274472 LOC106590196 non-coding upstream 239494 25976372 ~ 25976658 (-)
G1274486 NA non-coding upstream 253174 25990052 ~ 25990437 (-)
G1274490 NA non-coding upstream 256912 25993790 ~ 25994015 (-)
G1274494 NA non-coding upstream 262046 25998924 ~ 25999228 (-)
G1271421 NA other downstream 1988833 23713355 ~ 23728939 (-)
G1269265 NA other downstream 3914420 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 4757683 20958372 ~ 20960089 (-)
G1267452 NA other downstream 5427099 20290350 ~ 20290673 (-)
G1267414 NA other downstream 5449284 20267966 ~ 20268488 (-)
G1274532 LOC106590196 other upstream 309370 26046058 ~ 26048599 (-)
G1275015 NA other upstream 774647 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 818090 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 833400 26566351 ~ 26694581 (-)
LOC110489892 NA other upstream 997335 26733490 ~ 26743932 (-)

Expression


Co-expression Network