LOC110489879 (LOC106590199)


Basic Information

Item Value
gene id LOC110489879
gene name LOC106590199
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 25746689 ~ 25769036 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036073.1
ttccccaggtgtcgttgtttctgtttcagtttcatgtctgtgcgttgtttgtgtttcttgttttgtattatgtttagTTCGTTTATTAAATtgttcactccctgaacttgctttccGACTCCCAGCGCACACGTTACAGAATGACGCCTCACCAAAGGGAAGCATCAGAGAGTTTTTTTAGTTTTTGTGTTGAGGTGATGTCTGGTCCGGGAGTCAGAACCGGCGTTACCTGGGAGGCCTCAGCCGGTTTGTAGGATTCCCATAACTCGGCGGGTTCGACGGGTTCCCCTGCCTTTGCTGGCTCGACGGGTTTCCATACCCCAGTGGGATCGACAGGCTGTGGTGCCTCAGCGGGTTCGATAGACTCCTATGCCTCAGCGGgctcgataggctcccatgcctcagctagGTGAACAGGTTCCCGTGCCTCGACGAAGGCAGCCAGGGAggcctcagccggctcatcaggTTTCTTGCGCCTCAGAAGAGGcgaccggtccgctcctgatccctgGGATCGTCCCTGTGGTTGGCGTCCTGCGGCTAGAGCCTCACGCCGGGGTGGGGAACTCTGATGATCCTCCAGTGCATCCAGAACCCTCAACAGTTCTCCTGCCTGCCCTGTGCTAACAGCCTACTGCACAGACAGAGGCCACATCTATAGATGGGTTACATCCACCCTAAAAATATTACCCCCATAGTAGGCTGTCACTTTTCAGTGCATTATACTCTATCCAAGTTGTCTTTAGATATACACACATTTTGCTGTTTGTTTACCATGTCTGTTGATTTTAACTGAAATAAAGACAGATTCATTATATTTATGTGATAATGACATCATCAAAACTGCTCTGTGATTGGTCCTTTCATAATGACATCATCATAGCCCTGCTCTCTGATTGGTCCCTAA
>XM_036944146.1
tggagtgtatgcaaatttccatcatacaaactgaggtagcagactttgtgaaaactCATTTTTGTGtctttctcaaaacttttggccacgactgtatgatTGAAACAGAgtacaaggctgggatggggATTGAAACCATAACTCGCATACAAACAAGACAATTAACACCATCTCCTGGCCACTAAGTGATACTGCACACACCGTATGTTGATTGGCAATCCACCCCTTTTCCAGCCTTAAAATAAATATAAGTAAATTCAAAAATCTTATCTTTATGTATTCATATGATATATGTGTGCTCGCCCCTGTCCCTGCATATGGTAAGTGTCCTTCCCCAGAGTCCTTTTCCTGCCCTCTGTGTGGAGACAGTAATGAGAGTCATGCGGGCCATCTGTCTGTGGCAAGAAAAGGCCTAGTTTATTCCCTCAGACCAGCTCTATGGGTTGGGATAGGGCTGTGTCTGTCTTGGGAGCCCAGCCCCTCAGGTTTCTTAGTTGCCAAGGGAGGAGGGTAATGTCCACTGCACAACCCCAGGACACTGCTACTGTGCAGGGAGGGACATGAACACCACTCCTACGGACATCCAGATGTTGTGGAGCTAACTGTTCATCAACTCATCAATGTTTGTGTCCCTTCTTATGTAGTGTGACAGGGCCTAACTCTGAAAGTAAGAGGGGTCTGGGGCGTACCTTGGAGAGCTCCATCCATGAGCTCTGAACACCATGACCTTTCAGAAGTCTTCGTCAACCTCTAGCATATTCCACATGCTCATATTATGgtttgtcattgtcctgttttgCACTGATGGTTTGACAGCTGGGATGGGGACGACACCTAACCTGAAACACATTGTGATTGGTCGATGTTACAGCTACATAACACTAGTTTGGCCTAATTCCAGaTATGACTGTGAGGAGATCTGGAGGGAGTTTGAGGAGGCTGTAATGAGGAAGTCTCGCTGTAACGTGAAGGTTAAGGACTACAAAAGGATGTTCCATGCCACACCACAGACTCTGACATGTGGTAAGTTGCTGTTCTGGAGTAAGACCAGGGAGCTGATACACAGCTATGCAGCTGCAACACGTCGTTTTTGGACCCTGGAGGACACGCTGGTGGGATACATGTTCAATGACCTCATCTGGTGCggacaggaagagaaagacagagGCTTTGATTTCAACTCTTGCCCAGACTGGTCAACGTGTGTTCACCATCCTGTCTATTCCTTGTGGAGACAAGCCTCACAAAACTTTGCTGCAGCGGCATGTGGCAACATCACAGTGCTGCTCAATGGATCCATAGAGAATGCTTTCAACAGGAAAAGCATGTTTGGGGGTGTGGAGCTGGACAGCCTGAACCCCAGAATGGTGGATCATGTCAACATCAAGGTGGTGGCCAACCTGGAGGGACCCTTCATAGAATCCTGCACTCAGGGTTCCATTGTGGATTTGATCAATGTCCTACAGACCAGAGGGTTCCGCTGGACCTGCACAGACAGTGACCTAACTCTGATGATCCTCCAGTGCATCCAGAACCCTCAACAGTTCTCCTGCCTGCCCTGTGCTAACAGCCTACTGCACAGACAGAGGCCACATCTATAGATGGGTTACATCCACCCTAAAAATATTACCCCCATAGTAGGCTGTCACTTTTCAGTGCATTATACTCTATCCAAGTTGTCTTTAGATATACACACATTTTGCTGTTTGTTTACCATGTCTGTTGATTTTAACTGAAATAAAGACAGATTCATTATATTTATGTGATAATGACATCATCAAAACTGCTCTGTGATTGGTCCTTTCATAATGACATCATCATAGCCCTGCTCTCTGATTGGTCCCTAA

Function

NR:

description
ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1-like

GO: NA

KEGG:

id description
K01242 CD38; ADP-ribosyl cyclase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036073.1 False 910 mRNA 0.50 2 25746689 25747770
XM_036944146.1 True 1847 mRNA 0.46 10 25746689 25769036

Neighbor

gene id symbol gene type direction distance location
LOC110489876 LOC106590200 coding downstream 9811 25717772 ~ 25736878 (-)
ralaa LOC106590204 coding downstream 100174 25620868 ~ 25646515 (-)
cdk13 LOC106590203 coding downstream 126816 25610392 ~ 25619873 (-)
LOC110489868 ralyl coding downstream 589441 25000488 ~ 25157248 (-)
LOC100135826 LOC100135826 coding downstream 780404 24959932 ~ 24966285 (-)
LOC110489878 LOC106590198 coding upstream 1888 25770924 ~ 25774941 (-)
LOC110489880 LOC106590197 coding upstream 17172 25786208 ~ 25801252 (-)
cdh19 LOC106590195 coding upstream 323296 26092332 ~ 26114459 (-)
trnaa-ugc-65 NA coding upstream 355705 26124741 ~ 26124814 (-)
LOC110489883 LOC106590194 coding upstream 478106 26247142 ~ 26252430 (-)
G1273315 NA non-coding downstream 517185 25229252 ~ 25229504 (-)
G1273290 NA non-coding downstream 533776 25212698 ~ 25212913 (-)
G1273285 NA non-coding downstream 536706 25209776 ~ 25209983 (-)
G1273280 NA non-coding downstream 538878 25207441 ~ 25207811 (-)
G1274428 NA non-coding upstream 140104 25909140 ~ 25909362 (-)
G1274472 LOC106590196 non-coding upstream 207336 25976372 ~ 25976658 (-)
G1274486 NA non-coding upstream 221016 25990052 ~ 25990437 (-)
G1274490 NA non-coding upstream 224754 25993790 ~ 25994015 (-)
G1274494 NA non-coding upstream 229888 25998924 ~ 25999228 (-)
G1271421 NA other downstream 2017750 23713355 ~ 23728939 (-)
G1269265 NA other downstream 3943337 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 4786600 20958372 ~ 20960089 (-)
G1267452 NA other downstream 5456016 20290350 ~ 20290673 (-)
G1267414 NA other downstream 5478201 20267966 ~ 20268488 (-)
G1274532 LOC106590196 other upstream 277212 26046058 ~ 26048599 (-)
G1275015 NA other upstream 742489 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 785932 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 801242 26566351 ~ 26694581 (-)
LOC110489892 NA other upstream 965177 26733490 ~ 26743932 (-)

Expression


Co-expression Network