LOC110489878 (LOC106590198)


Basic Information

Item Value
gene id LOC110489878
gene name LOC106590198
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 25770924 ~ 25774941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944145.1
TGCCAGTTTGTTGTGAAGAAGAACTGTTTCAGAGAAGTGAAACTGAATGTGACTATTCTCAGTGTTTTTAAGGACAGTGACCATGGCAGAGGCCTGTATTTCAGTGTCCCTGGATGAGTTTAGTTGCTCAATCTGTCTGGATTTACTGAATGATCCGGTGACTATTCCATGTGGACACAGCTACTGTAAAGTTTGTATTAAGGGTCACTGGGATCAGGATGATCAAAAGCTTATCTACAGCTGCCCTCAATGCAGACAGACCTTTACCCCAAGGCCTGTCCTGAGCAGAAACAAcatgctaaatgaactagtgggGAAACTGAAGAAAACAGGACAAGAAGTTTCCCCTTCTCTGCCGTAtgctggacctggagatgtgCCATGTGACATCTGTACTGGTAAACAACACAGAGCAGTGAAGTCCTGTTTGGTGTGTCTGGCCTCGTACTGCGAGACTCACGTTCAGCTCCACTATGAGTCAACAGCGTTGAAGAAACATAGTCTGTGTAAAGCCTCCACGCAACTAAAGGAGAGGATCTGCCCTCACCATGGCAAACTGTTGGAGGTCTACTGCTGCACTGATCAACAATGCATTTGTTATCAGTGTGCTATAGATCAACACAGAGGTCATGAAACTGTTGTAGCTCCTGCTGAAAGGGCAAAGAAACAGGAACAGGTGAGGAAGGTACAAAGGGAATGTCAGCAGAAAATCAAGAAGAGGGAAACTGTGATGCTGGACCTGCAAAACATGATGAGTTCTGTCAAGTGCTCTGCACAGGAAGCTGTGGTGGACAGTGAGAGGACCTTCACTGAGCTGATCCGCTTCATTGAGAGAAGAAGCTCTGAGGTGAGAGAGATGATCAAAGCTAAGGAGAGGGATATAGTGAGCGAGACTGAAGGACTTCTAGATACACTGGAGAAGGACAATGTTGAACTGAGGAAGATTGATGCCAACATTATACTGCTGACACAGACAGAGGATCACATCCATTTCCTCCAGAGCTGCAAGTCTCTGTTCGCCCCCATTGGATTTGAAGACATACCTAGGATTCCTGTTGGTCATGAAGTATATTTTCAGAAAGTTAAGATGTCCACCTCTACACTGAAAGAACAACTAGAGGATGTCTGCTCAGAGGAACTGGGGAAGGTCTCTGAAGCAGATATAACTGGCAATCTTGGCAGCGAGGATTCAGTAGAACAGAACCTGGGCTTGAAGGAAACCATGCAAGCTGAAGATCCACAGATGCAGAAGCTGTTTGTCCCTATGGGTCACGTCCTGGACAGGCTGACTCCTAAGAACTTCAGGGAGTTGATGGTGGTAGTGACTGAGCTCACCATTGACACAGAAGACAAGCTGAAGGGCATCATTGACCTCATATATGAGAGGGCCATTGCACACCCTGCCTGCTCTGTGGTCTACGCCAACTTGTGCCGCTGCCTAATGGGGCTCAAAGTGCCAACGTCATGTAATCCGAGAGTGACTTTGAATTTCCGTAAATTACTGCTGAATCGATGCCAGTCTGAGTTTGAGAATAATACATCTGAGCTCTTTGGAGGAAAGCAGAAGGAGCTGGACACCACCACCAAGGGGGAGGTCAGCCAGCGACTGGAGGAGGAGCCAGAGGAGGCCAAGGCCATGTGGTGCAGACGGTCTCTAGGCAACATCAGATTCATTTGCGAGTTGTTCCAGTTGAAGATGCTTACAGAAGCCATTATGCACAATTGCATCGTAAAGCTTGCAAAGGACGGCGACGATAACTCTCTGGAGTGTCTGTGCATAATGCTCCCCACCATCGGCAAGGGCTCAGAGAAGTTCAGGCCCAGAATGGATCAGTACTACAACGCGATTGTGACGATTGTGAAGAATAAGACAACCTCCCCCAGAATCCGCTATATGCTGCAGGATGTGCTGGACCTCCGAAAGCTTCATCTGTAGTAGGGGAGAACATGTGCACAGGACaagatggaaacacacacacacacacacacatcaatatgTTATAAGAGTGAATACATGTATTGGATATAATTATTTGTGAAATTAAATATGATAATGTAAGACTATTTGCTGTTGATCTATACAATTAAACTGAAATTAAACATGTATTCCCTACAATATGTATATTA
>XM_021562833.2
CTGCCAGTTTGTTGTGAAGAAGAACTGTTTCAGAGAAGTGAAACTGAATGTGACTATTCTCAGTGTTTTTAAGGACAGTGACCATGGCAGAGGCCTGTATTTCAGTGTCCCTGGATGAGTTTAGTTGCTCAATCTGTCTGGATTTACTGAATGATCCGGTGACTATTCCATGTGGACACAGCTACTGTAAAGTTTGTATTAAGGGTCACTGGGATCAGGATGATCAAAAGCTTATCTACAGCTGCCCTCAATGCAGACAGACCTTTACCCCAAGGCCTGTCCTGAGCAGAAACAAcatgctaaatgaactagtgggGAAACTGAAGAAAACAGGACAAGAAGTTTCCCCTTCTCTGCCGTAtgctggacctggagatgtgCCATGTGACATCTGTACTGGTAAACAACACAGAGCAGTGAAGTCCTGTTTGGTGTGTCTGGCCTCGTACTGCGAGACTCACGTTCAGCTCCACTATGAGTCAACAGCGTTGAAGAAACATAGTCTGTGTAAAGCCTCCACGCAACTAAAGGAGAGGATCTGCCCTCACCATGGCAAACTGTTGGAGGTCTACTGCTGCACTGATCAACAATGCATTTGTTATCAGTGTGCTATAGATCAACACAGAGGTCATGAAACTGTTGTAGCTCCTGCTGAAAGGGCAAAGAAACAGGAACAGGTGAGGAAGGTACAAAGGGAATGTCAGCAGAAAATCAAGAAGAGGGAAACTGTGATGCTGGACCTGCAAAACATGATGAGTTCTGTCAAGTGCTCTGCACAGGAAGCTGTGGTGGACAGTGAGAGGACCTTCACTGAGCTGATCCGCTTCATTGAGAGAAGAAGCTCTGAGGTGAGAGAGATGATCAAAGCTAAGGAGAGGGATATAGTGAGCGAGACTGAAGGACTTCTAGATACACTGGAGAAGGACAATGTTGAACTGAGGAAGATTGATGCCAACATTATACTGCTGACACAGACAGAGGATCACATCCATTTCCTCCAGAGCTGCAAGTCTCTGTTCGCCCCCATTGGATTTGAAGACATACCTAGGATTCCTGTTGGTCATGAAGTATATTTTCAGAAAGTTAAGATGTCCACCTCTACACTGAAAGAACAACTAGAGGATGTCTGCTCAGAGGAACTGGGGAAGGTCTCTGAAGCAGATATAACTGGCAATCTTGGCAGCGAGGATTCAGTAGAACAGAACCTGGGCTTGAAGGAAACCATGCAAGCTGAAGATCCACAGATGCAGAAGCTGTTTGTCCCTATGGGTCACGTCCTGGACAGGCTGACTCCTAAGAACTTCAGGGAGTTGATGGTGGTAGTGACTGAGCTCACCATTGACACAGAAGACAAGCTGAAGGGCATCATTGACCTCATATATGAGAGGGCCATTGCACACCCTGCCTGCTCTGTGGTCTACGCCAACTTGTGCCGCTGCCTAATGGGGCTCAAAGTGCCAACGTCATGTAATCCGAGAGTGACTTTGAATTTCCGTAAATTACTGCTGAATCGATGCCAGTCTGAGTTTGAGAATAATACATCTGAGCTCTTTGGAGGAAAGCAGAAGGAGCTGGACACCACCACCAAGCTTGTGAAGCTTGTCCAAACCTTCCAGGGGGAGGTCAGCCAGCGACTGGAGGAGGAGCCAGAGGAGGCCAAGGCCATGTGGTGCAGACGGTCTCTAGGCAACATCAGATTCATTTGCGAGTTGTTCCAGTTGAAGATGCTTACAGAAGCCATTATGCACAATTGCATCGTAAAGCTTGCAAAGGACGGCGACGATAACTCTCTGGAGTGTCTGTGCATAATGCTCCCCACCATCGGCAAGGGCTCAGAGAAGTTCAGGCCCAGAATGGATCAGTACTACAACGCGATTGTGACGATTGTGAAGAATAAGACAACCTCCCCCAGAATCCGCTATATGCTGCAGGATGTGCTGGACCTCCGAAAGCTTCATCTGTAGTAGGGGAGAACATGTGCACAGGACaagatggaaacacacacacacacacacacatcaatatgTTATAAGAGTGAATACATGTATTGGATATAATTATTTGTGAAATTAAATATGATAATGTAAGACTATTTGCTGTTGATCTATACAATTAAACTGAAATTAAACATGTATTCCCTACAATATGTATATTA
>XM_036944144.1
CTGCCAGTTTGTTGTGAAGAAGAACTGTTTCAGAGAAGTGAAACTGAATGTGACTATTCTCAGTGTTTTTAAGGACAGTGACCATGGCAGAGGCCTGTATTTCAGTGTCCCTGGATGAGTTTAGTTGCTCAATCTGTCTGGATTTACTGAATGATCCGGTGACTATTCCATGTGGACACAGCTACTGTAAAGTTTGTATTAAGGGTCACTGGGATCAGGATGATCAAAAGCTTATCTACAGCTGCCCTCAATGCAGACAGACCTTTACCCCAAGGCCTGTCCTGAGCAGAAACAAcatgctaaatgaactagtgggGAAACTGAAGAAAACAGGACAAGAAGTTTCCCCTTCTCTGCCGTAtgctggacctggagatgtgCCATGTGACATCTGTACTGGTAAACAACACAGAGCAGTGAAGTCCTGTTTGGTGTGTCTGGCCTCGTACTGCGAGACTCACGTTCAGCTCCACTATGAGTCAACAGCGTTGAAGAAACATAGTCTGTGTAAAGCCTCCACGCAACTAAAGGAGAGGATCTGCCCTCACCATGGCAAACTGTTGGAGGTCTACTGCTGCACTGATCAACAATGCATTTGTTATCAGTGTGCTATAGATCAACACAGAGGTCATGAAACTGTTGTAGCTCCTGCTGAAAGGGCAAAGAAACAGGAACAGGTGAGGAAGGTACAAAGGGAATGTCAGCAGAAAATCAAGAAGAGGGAAACTGTGATGCTGGACCTGCAAAACATGATGAGTTCTGTCAAGTGCTCTGCACAGGAAGCTGTGGTGGACAGTGAGAGGACCTTCACTGAGCTGATCCGCTTCATTGAGAGAAGAAGCTCTGAGGTGAGAGAGATGATCAAAGCTAAGGAGAGGGATATAGTGAGCGAGACTGAAGGACTTCTAGATACACTGGAGAAGGACAATGTTGAACTGAGGAAGATTGATGCCAACATTATACTGCTGACACAGACAGAGGATCACATCCATTTCCTCCAGAGCTGCAAGTCTCTGTTCGCCCCCATTGGATTTGAAGACATACCTAGGATTCCTGTTGGTCATGAAGTATATTTTCAGAAAGTTAAGATGTCCACCTCTACACTGAAAGAACAACTAGAGGATGTCTGCTCAGAGGAACTGGGGAAGGTCTCTGAAGCAGATATAACTGGCAATCTTGGCAGCGAGGATTCAGTAGAACAGAACCTGGGCTTGAAGGAAACCATGCAAGCTGAAGATCCACAGATGCAGAAGCTGTTTGTCCCTATGGGTCACGTCCTGGACAGGCTGACTCCTAAGAACTTCAGGGAGTTGATGGTGGTAGTGACTGAGCTCACCATTGACACAGAAGACAAGCTGAAGGGCATCATTGACCTCATATATGAGAGGGCCATTGCACACCCTGCCTGCTCTGTGGTCTACGCCAACTTGTGCCGCTGCCTAATGGGGCTCAAAGTGCCAACGTCATGTAATCCGAGAGTGACTTTGAATTTCCGTAAATTACTGCTGAATCGATGCCAGTCTGAGTTTGAGAATAATACATCTGAGCTCTTTGGAGGAAAGCAGAAGGAGCTGGACACCACCACCAAGCTTGTCCAAACCTTCCAGGGGGAGGTCAGCCAGCGACTGGAGGAGGAGCCAGAGGAGGCCAAGGCCATGTGGTGCAGACGGTCTCTAGGCAACATCAGATTCATTTGCGAGTTGTTCCAGTTGAAGATGCTTACAGAAGCCATTATGCACAATTGCATCGTAAAGCTTGCAAAGGACGGCGACGATAACTCTCTGGAGTGTCTGTGCATAATGCTCCCCACCATCGGCAAGGGCTCAGAGAAGTTCAGGCCCAGAATGGATCAGTACTACAACGCGATTGTGACGATTGTGAAGAATAAGACAACCTCCCCCAGAATCCGCTATATGCTGCAGGATGTGCTGGACCTCCGAAAGCTTCATCTGTAGTAGGGGAGAACATGTGCACAGGACaagatggaaacacacacacacacacacacatcaatatgTTATAAGAGTGAATACATGTATTGGATATAATTATTTGTGAAATTAAATATGATAATGTAAGACTATTTGCTGTTGATCTATACAATTAAACTGAAATTAAACATGTATTCCCTACAATATGTATATTA

Function

NR:

description
tripartite motif-containing protein 47-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944145.1 False 2127 mRNA 0.46 10 25770924 25774940
XM_021562833.2 False 2155 mRNA 0.46 10 25770924 25774941
XM_036944144.1 True 2146 mRNA 0.46 10 25770924 25774941

Neighbor

gene id symbol gene type direction distance location
LOC110489879 LOC106590199 coding downstream 1888 25746689 ~ 25769036 (-)
LOC110489876 LOC106590200 coding downstream 34046 25717772 ~ 25736878 (-)
ralaa LOC106590204 coding downstream 124409 25620868 ~ 25646515 (-)
cdk13 LOC106590203 coding downstream 151051 25610392 ~ 25619873 (-)
LOC110489868 ralyl coding downstream 613676 25000488 ~ 25157248 (-)
LOC110489880 LOC106590197 coding upstream 11267 25786208 ~ 25801252 (-)
cdh19 LOC106590195 coding upstream 317391 26092332 ~ 26114459 (-)
trnaa-ugc-65 NA coding upstream 349800 26124741 ~ 26124814 (-)
LOC110489883 LOC106590194 coding upstream 472201 26247142 ~ 26252430 (-)
LOC110489884 tmx3 coding upstream 665054 26439995 ~ 26506930 (-)
G1273315 NA non-coding downstream 541420 25229252 ~ 25229504 (-)
G1273290 NA non-coding downstream 558011 25212698 ~ 25212913 (-)
G1273285 NA non-coding downstream 560941 25209776 ~ 25209983 (-)
G1273280 NA non-coding downstream 563113 25207441 ~ 25207811 (-)
G1274428 NA non-coding upstream 134199 25909140 ~ 25909362 (-)
G1274472 LOC106590196 non-coding upstream 201431 25976372 ~ 25976658 (-)
G1274486 NA non-coding upstream 215111 25990052 ~ 25990437 (-)
G1274490 NA non-coding upstream 218849 25993790 ~ 25994015 (-)
G1274494 NA non-coding upstream 223983 25998924 ~ 25999228 (-)
G1271421 NA other downstream 2041985 23713355 ~ 23728939 (-)
G1269265 NA other downstream 3967572 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 4810835 20958372 ~ 20960089 (-)
G1267452 NA other downstream 5480251 20290350 ~ 20290673 (-)
G1267414 NA other downstream 5502436 20267966 ~ 20268488 (-)
G1274532 LOC106590196 other upstream 271307 26046058 ~ 26048599 (-)
G1275015 NA other upstream 736584 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 780027 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 795337 26566351 ~ 26694581 (-)
LOC110489892 NA other upstream 959272 26733490 ~ 26743932 (-)

Expression


Co-expression Network