LOC110489880 (LOC106590197)


Basic Information

Item Value
gene id LOC110489880
gene name LOC106590197
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 25786208 ~ 25801252 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562835.2
ATGTTCCGAATACATTAAAATGtcacaggtgtcaagcttatgggcatgtggcagcagtgtgtataAAGGAGGGTCCAAGGGGTGAGaaatgtgcagaagggcatgagacaagggaatgtgtagtattggggaaagtagtggaatgtgttaattgtaggggtgcctatggagctggggatcagaaatgtcccaTGCGAGAGAAGCAGGTTGTAGTTTCCAGGGTTACAGCattgaagaaagtagaggaaggggttaagggggaggagtggtgagagtagtagagatataccagtacagaaGGTGGTATGAAGGTGGCCAAAAGGTGATATAAGTTTCAGTAAAATGggatttttagcatttatagcaatggttattaattgtactgcagggatggatcGGAAGTCTCAgaaaattgaggttgtggtggcagctgcataGCGGTATTTAGGTGTGCAAGACTTGACAGCAGAAGAActacagggtgtgttaagtggtgatGTCCCATCTTTTCAGGATGATGGCATGAGGTAGGAATACATTAAATGTAATggagttgtactccagtctagtaggtggcggtaatgcaacaaatTGGATGCCAACCACCGTTAAACATCATAGAAGAAGAAACTCACAAACGCTCTGACGAAAACCGTGAGGCGGATACGTAAactcaaatacacatggttagccgatgttattgcgagtgtatcGAAAtgcttaataaagagcagtgaaaCTATCAGGAACTGTGTGCGGGTTCCTCCTTTTTTCactgtttccaaaactaaaaTATGTTACGAACAGAGTAGATTTTTTtgttgtagactttaccctttgccaacgTTTCTAAAATCTCGTTCTTTAGAAGGAGTGCAAGTGCGAATTGAGTTATTGTACACGTTCACTTCAGAGTCGTTTACTAACGGAAATACGGAAACATatgctagaacgcgccaataggcTCTCGCTAGCTCGTGTTTGGCTCCGCCCACCTCGTTGTTTGTTCTACCCTGACGTTGGAAACTACAGACAGTGGTCTATATTTTGGTACGCTAGCAGTACAAGAAACAAAACCAACAACTGCGCTGTAGCAGTACAGTGACGTGTTTTATTAAGAATGAACCGGAAATATCGTTCGTTAGTAACCTGCAGTGACTCAACTACTGTGGCTCAAACTATTGATATTTTGAATCAGAAAATAATTTAATTGTCTAATCTGTGTGGGTTTACTGAATCCGGTGAGAATTCCCTGTGTACAGAGTTACTGCAAATTATGTATTGGTAACTGGGATCAAGATGACCAAGGTAATCCTGACCAGATATGCTTCCAGTGCAGAGAGACCTACACCCCAATACCTGtactaaacacaaacacaagtttgatgaaattgaaaaaatAAAGAAGACTGGATTGCAAACGGATGACACTGGATCTGGAAACATAGTCATATACTGAGGAAACATACTGAGGAAATACTCAGCAAACATATGCTGAGAAATCAGCACCTGGTTAACAAGAAAAAGATGAAGATGAGTGGGACCAAGAAGACATGCAAACAAGAAACCCAGTCACCAGCTCACTCTTCCAGTGGACAGGCTGTGGAAAATCAGAAATTGAAGGAGTTTCAGGATCCAGAGCCAGAGAAGACACAGGAACTGTATGCTCAAATGGATTACATCCTGGATAGGGTAAATCAAAACAACTTCCAGCAATCGATGTTGGCAATTACTGAGTTCACCATTAACACAGAGGCCAGACTGAAGGGCATCATTCACCTCATATATGAGAGGGCCCTGGCACATCCTACCAGGTCTGCGACCTATGCCAACATCTGCCACTGCCTCATGGGGCTTAGAGTACCCACCGCTGCCAAACCAGGAGTGACAGTAAATTTCCGCAAGCTGTTTCTGAACCGAGTCCAAGCAAACTTTGAGAACATGGCGAGAAACGGTTGCGAAATCTTCCGGCAAAAACAGGAAATGGTGGATGCCATCACCAAGGAGGAGGAGCGCCAGCGAGTgtgggaggagctggaggaggccaAGACCGAGGAGCGGAGGCAGTCGCTAGGCAATATCAAGTTAATGTGTGAGTTGTTCAAGTTGAAGATGCTGACTGAGCACGTCATGCATGACGTCATCGTACAGCTGCTGAAGAACCAAGATGATAACTCTCTGGAGGGTCTCTGCACATTACTCTACACCATCGGCAAGGACTTGGACTTTAAGAAGGCCAGGCCCAGAATGGATCAGTACTACAACATGATTGTGAAGATTATGAAGAATAGGACAACCTCCCCCAGAATCACAAGCATGCTGCAGGATGTGCTGGACCTCCGAAAGAAAGAAACGGCCCAGCTTGGTGAGTTGGTGGAAAAGATGGAGAAGACCGGGCTGCAAGCTGACAATGATGCTGAGAAACACACGGGACCTGGAGACACAGAACCTGTTTTGCGTCCTCACTATAAGTCATTAGCCATGAAGAATCAGAAGCTGATCAGCACATCTATACCACTACAGGAGAACACATGTCCTCATCATGATGATAAGCTGAAAGCTGAAGACTCAGCTGCTGCTCGGGGGGCTACCAAAAAGAAAAAGGTGAATGTGCAGTTGACATGCCAACAGAtaatccaggagagagaggaggaactaCAGAAACTGAGACAGGAAGTGGAGTCTCTAAAGTGCTTATCACAGGCTACAATGGAGGACAGTGAGAGGTTCTTCACCAAGCTGATTGAGACAAGGTGCTCAGAGGTGAGAGAGGTGATCCAAGCTAAAGAGAAGGAGATGGTGAGTGAGGCTGAGGGACTCCTACAAACACTGGAGCAGGAGCTTGATGAGCTGAAGAGAACCGAAACAGAGGGTAGACAGCTTCCACACATAGAGGTCTACCCCCATTTCCTACAGAAATTGCCCAGCATCACTGAGGCTTTTGAAGAAGTGAGGACATGTGCCTCTGAAATGCAACAGAAATTTGAAGATTCCTCCAAGTTGCAATTTGTGGAGTTTTCTAAATCAGTTGAAGAAAGTCTGGGACCATACAcTATCAGTTCACTTAGCACTAGCAGACAGGCAGTGGAAGAAAAGGACTTGCAGGACCTTGTGGACCTAGAGACAGTGAAGACAGAGGAAATGTATGAACAAATGGATAACATCCTGACCAGCCTGACTCCCAAGAACTTCCATCAGTCAATGAAGGTAGTGAGTGCATTCACCATTGACACAGAGGACAAACTCCAGAGCATCATTGACTCTATATATGAGAGGGCCATCTTAAACCCTACCAGCGCTGAGGTCTATGCAAAGGTGTGCAACCAACTCAAGGGGCTCAAAATACCTGGAGTGACAGTAAATTTCCGCAAGCTGCTGCTGAACCACTGCCAGAAAGGCTTTGAGAAGGATAATAGAAGGATCTTAAAAGAAAAGCAGAGGGAACTCGACACCACCACTGAGGAGGAGGACCGTCAGCGACtgatggaggagctggaggaggctaAGGCAGAGGGGCAGCGGGAGTTGCTAGGCAACATCACATTCATCTGCCATTTGTTCAAGTTGAAGATGATGACCGAGGGCCTCATAGACTACTGCATCGTAAAGCTAATAAAGGATGGAGATGATGATTCGCTAGAGGGTCTGTGCACAATACTCTTCACCATTGGGAAAGACTTGGACTCTGAGAagaaccagCCCAGAATGGATGAACACTACACCCAGATTAATCTGAtacaggagagaaggaggacCTCCCCCAGAATCCGCTATATGCTTCAAGATGTGCTGGACCGCAGAACGCTCCATTTGTACAAGGGCCAAAAGGAAGACCATTGAAGACCAGGACCATGTGTTTTTACAATtcctctgtcctgtgtctgtgttcttttgcccatcttaatctgtTTTCTTttaattggccagtctgagatatggctttttcattgcaactctgcctagaaggccagcatccctgagttGCCTCTTCtc
>XM_021562837.2
CGTATGTTCCGAATACATTAAAATGtcacaggtgtcaagcttatgggcatgtggcagcagtgtgtataAAGGAGGGTCCAAGGGGTGAGaaatgtgcagaagggcatgagacaagggaatgtgtagtattggggaaagtagtggaatgtgttaattgtaggggtgcctatggagctggggatcagaaatgtcccaTGCGAGAGAAGCAGGTTGTAGTTTCCAGGGTTACAGCattgaagaaagtagaggaaggggttaagggggaggagtggtgagagtagtagagatataccagtacagaaGGTGGTATGAAGGTGGCCAAAAGGTGATATAAGTTTCAGTAAAATGggatttttagcatttatagcaatggttattaattgtactgcagggatggatcGGAAGTCTCAgaaaattgaggttgtggtggcagctgcataGCGGTATTTAGGTGTGCAAGACTTGACAGCAGAAGAActacagggtgtgttaagtggtgatGTCCCATCTTTTCAGGATGATGGCATGAGGTAGGAATACATTAAATGTAATggagttgtactccagtctagtaggtggcggtaatgcaacaaatTGGATGCCAACCACCGTTAAACATCATAGAAGAAGAAACTCACAAACGCTCTGACGAAAACCGTGAGGCGGATACGTAAactcaaatacacatggttagccgatgttattgcgagtgtatcGAAAtgcttaataaagagcagtgaaaCTATCAGGAACTGTGTGCGGGTTCCTCCTTTTTTCactgtttccaaaactaaaaTATGTTACGAACAGAGTAGATTTTTTtgttgtagactttaccctttgccaacgTTTCTAAAATCTCGTTCTTTAGAAGGAGTGCAAGTGCGAATTGAGTTATTGTACACGTTCACTTCAGAGTCGTTTACTAACGGAAATACGGAAACATatgctagaacgcgccaataggcTCTCGCTAGCTCGTGTTTGGCTCCGCCCACCTCGTTGTTTGTTCTACCCTGACGTTGGAAACTACAGACAGTGGTCTATATTTTGGTACGCTAGCAGTACAAGAAACAAAACCAACAACTGCGCTGTAGCAGTACAGTGACGTGTTTTATTAAGAATGAACCGGAAATATCGTTCGTTAGTAACCTGCAGTGACTCAACTACTGTGGCTCAAACTATTGATATTTTGAATCAGAAAATAATTTAATTGTCTAATCTGTGTGGGTTTACTGAATCCGGTGAGAATTCCCTGTGTACAGAGTTACTGCAAATTATGTATTGGTAACTGGGATCAAGATGACCAAGGTAATCCTGACCAGATATGCTTCCAGTGCAGAGAGACCTACACCCCAATACCTGtactaaacacaaacacaagtttgatgaaattgaaaaaatAAAGAAGACTGGATTGCAAACGGATGACACTGGATCTGGAAACATAGTCATATACTGAGGAAACATACTGAGGAAATACTCAGCAAACATATGCTGAGAAATCAGCACCTGGTTAACAAGAAAAAGATGAAGATGAGTGGGACCAAGAAGACATGCAAACAAGAAACCCAGTCACCAGCTCACTCTTCCAGTGGACAGGCTGTGGAAAATCAGAAATTGAAGGAGTTTCAGGATCCAGAGCCAGAGAAGACACAGGAACTGTATGCTCAAATGGATTACATCCTGGATAGGGTAAATCAAAACAACTTCCAGCAATCGATGTTGGCAATTACTGAGTTCACCATTAACACAGAGGCCAGACTGAAGGGCATCATTCACCTCATATATGAGAGGGCCCTGGCACATCCTACCAGGTCTGCGACCTATGCCAACATCTGCCACTGCCTCATGGGGCTTAGAGTACCCACCGCTGCCAAACCAGGAGTGACAGTAAATTTCCGCAAGCTGTTTCTGAACCGAGTCCAAGCAAACTTTGAGAACATGGCGAGAAACGGTTGCGAAATCTTCCGGCAAAAACAGGAAATGGTGGATGCCATCACCAAGGAGGAGGAGCGCCAGCGAGTgtgggaggagctggaggaggccaAGACCGAGGAGCGGAGGCAGTCGCTAGGCAATATCAAGTTAATGTGTGAGTTGTTCAAGTTGAAGATGCTGACTGAGCACGTCATGCATGACGTCATCGTACAGCTGCTGAAGAACCAAGATGATAACTCTCTGGAGGGTCTCTGCACATTACTCTACACCATCGGCAAGGACTTGGACTTTAAGAAGGCCAGGCCCAGAATGGATCAGTACTACAACATGATTGTGAAGATTATGAAGAATAGGACAACCTCCCCCAGAATCACAAGCATGCTGCAGGATGTGCTGGACCTCCGAAAGAAAGAAACGGCCCAGCTTGGTGAGTTGGTGGAAAAGATGGAGAAGACCGGGCTGCAAGCTGACAATGATGCTGAGAAACACACGGGACCTGGAGACACAGAACCTGTTTTGCGTCCTCACTATAAGTCATTAGCCATGAAGAATCAGAAGCTGATCAGCACATCTATACCACTACAGGAGAACACATGTCCTCATCATGATGATAAGCTGAAAGCTGAAGACTCAGCTGCTGCTCGGGGGGCTACCAAAAAGAAAAAGGTGAATGTGCAGTTGACATGCCAACAGAtaatccaggagagagaggaggaactaCAGAAACTGAGACAGGAAGTGGAGTCTCTAAAGTGCTTATCACAGGCTACAATGGAGGACAGTGAGAGGTTCTTCACCAAGCTGATTGAGACAAGGTGCTCAGAGGTGAGAGAGGTGATCCAAGCTAAAGAGAAGGAGATGGTGAGTGAGGCTGAGGGACTCCTACAAACACTGGAGCAGGAGCTTGATGAGCTGAAGAGAACCGAAACAGAGGGTAGACAGCTTCCACACATAGAGGTCTACCCCCATTTCCTACAGAAATTGCCCAGCATCACTGAGGCTTTTGAAGAAGTGAGGACATGTGCCTCTGAAATGCAACAGAAATTTGAAGATTCCTCCAAGTTGCAATTTGTGGAGTTTTCTAAATCAGTTGAAGAAAGTCTGGGACCATACAcTATCAGTTCACTTAGCACTAGCAGACAGGCAGTGGAAGAAAAGGACTTGGACCTTGTGGACCTAGAGACAGTGAAGACAGAGGAAATGTATGAACAAATGGATAACATCCTGACCAGCCTGACTCCCAAGAACTTCCATCAGTCAATGAAGGTAGTGAGTGCATTCACCATTGACACAGAGGACAAACTCCAGAGCATCATTGACTCTATATATGAGAGGGCCATCTTAAACCCTACCAGCGCTGAGGTCTATGCAAAGGTGTGCAACCAACTCAAGGGGCTCAAAATACCTGGAGTGACAGTAAATTTCCGCAAGCTGCTGCTGAACCACTGCCAGAAAGGCTTTGAGAAGGATAATAGAAGGATCTTAAAAGAAAAGCAGAGGGAACTCGACACCACCACTGAGGAGGAGGACCGTCAGCGACtgatggaggagctggaggaggctaAGGCAGAGGGGCAGCGGGAGTTGCTAGGCAACATCACATTCATCTGCCATTTGTTCAAGTTGAAGATGATGACCGAGGGCCTCATAGACTACTGCATCGTAAAGCTAATAAAGGATGGAGATGATGATTCGCTAGAGGGTCTGTGCACAATACTCTTCACCATTGGGAAAGACTTGGACTCTGAGAagaaccagCCCAGAATGGATGAACACTACACCCAGATTAATCTGAtacaggagagaaggaggacCTCCCCCAGAATCCGCTATATGCTTCAAGATGTGCTGGACCGCAGAACGCTCCATTTGTACAAGGGCCAAAAGGAAGACCATTGAAGACCAGGACCATGTGTTTTTACAATtcctctgtcctgtgtctgtgttcttttgcccatcttaatctgtTTTCTTttaattggccagtctgagatatggctttttcattgcaactctgcctagaaggccagcatccctgagttGCCTCTTCtc

Function

NR:

description
uncharacterized protein LOC110489880 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562835.2 False 3993 mRNA 0.45 17 25786208 25801249
XM_021562837.2 True 3993 mRNA 0.45 17 25786208 25801252

Neighbor

gene id symbol gene type direction distance location
LOC110489878 LOC106590198 coding downstream 11267 25770924 ~ 25774941 (-)
LOC110489879 LOC106590199 coding downstream 17172 25746689 ~ 25769036 (-)
LOC110489876 LOC106590200 coding downstream 49330 25717772 ~ 25736878 (-)
ralaa LOC106590204 coding downstream 139693 25620868 ~ 25646515 (-)
cdk13 LOC106590203 coding downstream 166335 25610392 ~ 25619873 (-)
cdh19 LOC106590195 coding upstream 291080 26092332 ~ 26114459 (-)
trnaa-ugc-65 NA coding upstream 323489 26124741 ~ 26124814 (-)
LOC110489883 LOC106590194 coding upstream 445890 26247142 ~ 26252430 (-)
LOC110489884 tmx3 coding upstream 638743 26439995 ~ 26506930 (-)
pxdc1b pxdc1 coding upstream 712427 26513679 ~ 26528616 (-)
G1273315 NA non-coding downstream 556704 25229252 ~ 25229504 (-)
G1273290 NA non-coding downstream 573295 25212698 ~ 25212913 (-)
G1273285 NA non-coding downstream 576225 25209776 ~ 25209983 (-)
G1273280 NA non-coding downstream 578397 25207441 ~ 25207811 (-)
G1274428 NA non-coding upstream 107888 25909140 ~ 25909362 (-)
G1274472 LOC106590196 non-coding upstream 175120 25976372 ~ 25976658 (-)
G1274486 NA non-coding upstream 188800 25990052 ~ 25990437 (-)
G1274490 NA non-coding upstream 192538 25993790 ~ 25994015 (-)
G1274494 NA non-coding upstream 197672 25998924 ~ 25999228 (-)
G1271421 NA other downstream 2057269 23713355 ~ 23728939 (-)
G1269265 NA other downstream 3982856 21802687 ~ 21803352 (-)
G1268555 LOC106590243 other downstream 4826119 20958372 ~ 20960089 (-)
G1267452 NA other downstream 5495535 20290350 ~ 20290673 (-)
G1267414 NA other downstream 5517720 20267966 ~ 20268488 (-)
G1274532 LOC106590196 other upstream 244996 26046058 ~ 26048599 (-)
G1275015 NA other upstream 710273 26511525 ~ 26512075 (-)
G1275016 LOC106590191 other upstream 753716 26554968 ~ 26562033 (-)
LOC110489888 gli3 other upstream 769026 26566351 ~ 26694581 (-)
LOC110489892 NA other upstream 932961 26733490 ~ 26743932 (-)

Expression


Co-expression Network